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PDB: 4079 results

2L30
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Human PARP-1 zinc finger 1
Descriptor: Poly [ADP-ribose] polymerase 1, ZINC ION
Authors:Neuhaus, D, Eustermann, S, Yang, J, Videler, H.
Deposit date:2010-08-30
Release date:2011-02-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The DNA-binding domain of human PARP-1 interacts with DNA single-strand breaks as a monomer through its second zinc finger.
J.Mol.Biol., 407, 2011
6MWY
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The Prp8 intein of Cryptococcus gattii
Descriptor: Pre-mRNA-processing-splicing factor 8
Authors:Li, Z, Fu, B, Green, C.M, Lang, Y, Zhang, J, Oven, T.S, Li, X, Callahan, B.P, Chaturvedi, S, Belfort, M, Liao, G, Li, H.
Deposit date:2018-10-30
Release date:2019-11-06
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:Cisplatin protects mice from challenge ofCryptococcus neoformansby targeting the Prp8 intein.
Emerg Microbes Infect, 8, 2019
3O7P
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Crystal structure of the E.coli Fucose:proton symporter, FucP (N162A)
Descriptor: L-fucose-proton symporter, nonyl beta-D-glucopyranoside
Authors:Dang, S.Y, Sun, L.F, Wang, J, Yan, N.
Deposit date:2010-07-30
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.196 Å)
Cite:Structure of a fucose transporter in an outward-open conformation
Nature, 467, 2010
4LQD
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The crystal structures of the Brucella protein TcpB and the TLR adaptor protein TIRAP show structural differences in microbial TIR mimicry
Descriptor: GLYCEROL, Toll/interleukin-1 receptor domain-containing adapter protein
Authors:Snyder, G.A, Smith, P, Jiang, J, Xiao, T.S.
Deposit date:2013-07-17
Release date:2013-12-04
Last modified:2014-04-09
Method:X-RAY DIFFRACTION (2.451 Å)
Cite:Crystal structures of the Toll/Interleukin-1 receptor (TIR) domains from the Brucella protein TcpB and host adaptor TIRAP reveal mechanisms of molecular mimicry.
J.Biol.Chem., 289, 2014
3O7Q
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Crystal structure of a Major Facilitator Superfamily (MFS) transporter, FucP, in the outward conformation
Descriptor: L-fucose-proton symporter, nonyl beta-D-glucopyranoside
Authors:Sun, L.F, Dang, S.Y, Wang, J, Yan, N.
Deposit date:2010-07-30
Release date:2010-09-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.143 Å)
Cite:Structure of a fucose transporter in an outward-open conformation
Nature, 467, 2010
2Z3A
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Crystal Structure of Bacillus Subtilis CodW, a non-canonical HslV-like peptidase with an impaired catalytic apparatus
Descriptor: ATP-dependent protease hslV
Authors:Rho, S.H, Park, H.H, Kang, G.B, Lim, Y.J, Kang, M.S, Lim, B.K, Seong, I.S, Chung, C.H, Wang, J, Eom, S.H.
Deposit date:2007-06-03
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of Bacillus subtilis CodW, a noncanonical HslV-like peptidase with an impaired catalytic apparatus
Proteins, 71, 2007
2JXW
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Solution Structure of the Tandem WW Domains of FBP21
Descriptor: WW domain-binding protein 4
Authors:Huang, X, Zhang, J, Wu, J, Shi, Y.
Deposit date:2007-11-30
Release date:2008-12-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and function of the two tandem WW domains of the pre-mRNA splicing factor FBP21 (formin-binding protein 21)
J.Biol.Chem., 284, 2009
2HQE
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BU of 2hqe by Molmil
Crystal structure of human P100 Tudor domain: Large fragment
Descriptor: P100 Co-activator tudor domain
Authors:Shah, N, Zhao, M, Cheng, C, Xu, H, Yang, J, Silvennoinen, O, Liu, Z.J, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2006-07-18
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a large fragment of the Human P100 Tudor Domain
To be Published
2HQX
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Crystal structure of human P100 tudor domain conserved region
Descriptor: P100 CO-ACTIVATOR TUDOR DOMAIN
Authors:Zhao, M, Liu, Z.J, Xu, H, Yang, J, Silvennoinen, O, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2006-07-19
Release date:2006-10-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Crystal Structure of Human P100 Tudor Domain Conserved Region
To be Published
2KX6
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BU of 2kx6 by Molmil
Signaling state of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ramachandran, P.L, Lovett, J.E, Carl, P.J, Cammarata, M, Lee, J.H, Yang, J.O, Ihee, H, Timmel, C.R, van Thor, J.
Deposit date:2010-04-27
Release date:2011-06-15
Last modified:2012-07-18
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:The short-lived signaling state of the photoactive yellow protein photoreceptor revealed by combined structural probes.
J.Am.Chem.Soc., 133, 2011
2KU3
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BU of 2ku3 by Molmil
Solution structure of BRD1 PHD1 finger
Descriptor: Bromodomain-containing protein 1, ZINC ION
Authors:Qin, S, Zhang, J, Wu, J, Shi, Y.
Deposit date:2010-02-12
Release date:2011-02-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of BRD1 PHD1 finger
To be Published
8HGU
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Epoxide hydrolase from Bosea sp. PAMC 26642
Descriptor: Alpha/beta hydrolase
Authors:Lee, M.J, Hwang, J, Do, H, Lee, J.H.
Deposit date:2022-11-15
Release date:2023-11-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural insights into the distinct substrate preferences of two bacterial epoxide hydrolases.
Int.J.Biol.Macromol., 264, 2024
6IIL
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BU of 6iil by Molmil
USP14 catalytic domain bind to IU1-47
Descriptor: 1-[1-(4-chlorophenyl)-2,5-dimethyl-1H-pyrrol-3-yl]-2-(piperidin-1-yl)ethan-1-one, Ubiquitin carboxyl-terminal hydrolase 14
Authors:Mei, Z.Q, Wang, Y.W, Wang, F, Wang, J.W, He, W, Ding, S, Li, J.W.
Deposit date:2018-10-07
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Small molecule inhibitors reveal allosteric regulation of USP14 via steric blockade.
Cell Res., 28, 2018
2KRL
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The ensemble of the solution global structures of the 102-nt ribosome binding structure element of the turnip crinkle virus 3' UTR RNA
Descriptor: RNA (102-MER)
Authors:Zuo, X, Wang, J, Yu, P, Eyler, D, Xu, H, Starich, M, Tiede, D, Simon, A, Kasprzak, W, Schwieters, C, Shapiro, B.
Deposit date:2009-12-18
Release date:2011-02-09
Last modified:2024-05-01
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus.
Proc.Natl.Acad.Sci.USA, 107, 2010
8Q1N
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BU of 8q1n by Molmil
Cyclic peptide binder of the WBM-site of WDR5
Descriptor: Cyclic peptide inhibitor, WD repeat-containing protein 5
Authors:Schmeing, S, Chang, J.Y, t Hart, P, Gasper, R.
Deposit date:2023-08-01
Release date:2023-09-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.843 Å)
Cite:Macrocyclic peptides as inhibitors of WDR5-lncRNA interactions.
Chem.Commun.(Camb.), 59, 2023
4EDT
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BU of 4edt by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to ppGpp and Manganese
Descriptor: BENZAMIDINE, DNA primase, GUANOSINE-5',3'-TETRAPHOSPHATE, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-27
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
5YKJ
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BU of 5ykj by Molmil
Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems
Descriptor: GLYCEROL, Peroxiredoxin PRX1, mitochondrial, ...
Authors:Li, C.C, Yang, J, Yang, M.J, Liu, L, Peng, C.T, Li, T, He, L.H, Song, Y.J, Zhu, Y.B, Zhao, N.L, Zhao, C, Bao, R.
Deposit date:2017-10-14
Release date:2018-10-24
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems
To be published
4EDR
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BU of 4edr by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to UTP and Manganese
Descriptor: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-27
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
8HQI
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BU of 8hqi by Molmil
Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with inhibitor YH-53
Descriptor: 3C-like proteinase nsp5, N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Li, W.W, Zhang, J, Li, J.
Deposit date:2022-12-13
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with inhibitor YH-53
To Be Published
2KQT
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Solid-state NMR structure of the M2 transmembrane peptide of the influenza A virus in DMPC lipid bilayers bound to deuterated amantadine
Descriptor: (3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine, M2 protein
Authors:Cady, S.D, Schmidt-Rohr, K, Wang, J, Soto, C.S, DeGrado, W.F, Hong, M.
Deposit date:2009-11-18
Release date:2010-02-09
Last modified:2024-05-08
Method:SOLID-STATE NMR
Cite:Structure of the amantadine binding site of influenza M2 proton channels in lipid bilayers
Nature, 463, 2010
8HQH
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Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with inhibitor YH-53
Descriptor: 3C-like proteinase nsp5, N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Zou, X.F, Zhang, J, Li, J.
Deposit date:2022-12-13
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with inhibitor YH-53
To Be Published
8HQJ
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Crystal structure of SARS-Cov-2 main protease Y54C mutant in complex with inhibitor YH-53
Descriptor: 3C-like proteinase nsp5, N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Zhou, X.L, Zhang, J, Li, J.
Deposit date:2022-12-13
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Crystal structure of SARS-Cov-2 main protease Y54C mutant in complex with inhibitor YH-53
To Be Published
4EE1
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BU of 4ee1 by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to CTP and Manganese
Descriptor: BENZAMIDINE, CYTIDINE-5'-TRIPHOSPHATE, DNA primase, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-28
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
6J6K
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BU of 6j6k by Molmil
Apo-state streptavidin
Descriptor: Streptavidin
Authors:Fan, X, Wang, J, Lei, J.L, Wang, H.W.
Deposit date:2019-01-15
Release date:2019-05-29
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution.
Nat Commun, 10, 2019
2L43
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Structural basis for histone code recognition by BRPF2-PHD1 finger
Descriptor: Histone H3.3,LINKER,Bromodomain-containing protein 1, ZINC ION
Authors:Qin, S, Zhang, J, Wu, J, Shi, Y.
Deposit date:2010-10-01
Release date:2011-08-31
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Recognition of unmodified histone H3 by the first PHD finger of Bromodomain-PHD finger protein 2 provides insights into the regulation of histone acetyltransferases MOZ and MORF
To be Published

223532

PDB entries from 2024-08-07

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