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PDB: 89832 results

6ZNG
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BU of 6zng by Molmil
MaeB full-length acetyl-CoA bound state
Descriptor: ACETYL COENZYME *A, NADP-dependent malate dehydrogenase,Malate dehydrogenase
Authors:Lovering, A.L, Harding, C.J.
Deposit date:2020-07-06
Release date:2021-02-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:A rotary mechanism for allostery in bacterial hybrid malic enzymes.
Nat Commun, 12, 2021
4MJX
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BU of 4mjx by Molmil
Crystal structure of the double mutant (S112A, H303A) of B.anthracis mycrocine immunity protein (MccF)
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Microcin immunity protein MccF
Authors:Nocek, B, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-09-04
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the double mutant (S112A, H303A) of B.anthracis mycrocine immunity protein (MccF)
TO BE PUBLISHED
7MJS
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BU of 7mjs by Molmil
Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2AG3 Fab heavy chain, 2AG3 Fab light chain, ...
Authors:Cater, R.J, Chua, G.L, Erramilli, S.K, Keener, J.E, Choy, B.C, Tokarz, P, Chin, C.F, Quek, D.Q.Y, Kloss, B, Pepe, J.G, Parisi, G, Wong, B.H, Clarke, O.B, Marty, M.T, Kossiakoff, A.A, Khelashvili, G, Silver, D.L, Mancia, F.
Deposit date:2021-04-20
Release date:2021-06-16
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural basis of omega-3 fatty acid transport across the blood-brain barrier.
Nature, 595, 2021
2MP2
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BU of 2mp2 by Molmil
Solution structure of SUMO dimer in complex with SIM2-3 from RNF4
Descriptor: E3 ubiquitin-protein ligase RNF4, Small ubiquitin-related modifier 3
Authors:Xu, Y, Plechanovov, A, Simpson, P, Marchant, J, Leidecker, O, Sebastian, K, Hay, R.T, Matthews, S.J.
Deposit date:2014-05-09
Release date:2014-07-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4.
Nat Commun, 5, 2014
8COB
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BU of 8cob by Molmil
Crystal structure of human PCNA in complex with ERCC6L2 PIP box peptide
Descriptor: DNA excision repair protein ERCC-6-like 2, Proliferating cell nuclear antigen
Authors:Ariza, A.
Deposit date:2023-02-27
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:ERCC6L2 mitigates replication stress and promotes centromere stability.
Cell Rep, 42, 2023
5IPT
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BU of 5ipt by Molmil
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 5
Descriptor: Ionotropic glutamate receptor subunit NR2B, N-methyl-D-aspartate receptor subunit NR1-8a
Authors:Zhu, S, Stein, A.R, Yoshioka, C, Lee, C.H, Goehring, A, Mchaourab, S.H, Gouaux, E.
Deposit date:2016-03-09
Release date:2016-04-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Mechanism of NMDA Receptor Inhibition and Activation.
Cell, 165, 2016
8TDN
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BU of 8tdn by Molmil
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Descriptor: Transthyretin
Authors:Nguyen, B.A, Singh, V, Saelices, L.
Deposit date:2023-07-04
Release date:2023-12-13
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural polymorphism of amyloid fibrils in ATTR amyloidosis revealed by cryo-electron microscopy.
Nat Commun, 15, 2024
5LZZ
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BU of 5lzz by Molmil
Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
Authors:Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S.
Deposit date:2016-10-02
Release date:2016-11-30
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
Cell, 167, 2016
5A7T
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BU of 5a7t by Molmil
Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.4 angstrom resolution.
Descriptor: DI(HYDROXYETHYL)ETHER, TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE
Authors:Van Laer, B, Roovers, M, Wauters, L, Kasprzak, J, Dyzma, M, Deyaert, E, Feller, A, Bujnicki, J, Droogmans, L, Versees, W.
Deposit date:2015-07-09
Release date:2016-01-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
Nucleic Acids Res., 44, 2016
5LMD
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BU of 5lmd by Molmil
The crystal structure of hCA II in complex with a benzoxaborole inhibitor
Descriptor: 1-[7,7-bis(oxidanyl)-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-trien-4-yl]-3-(2-methoxy-5-methyl-phenyl)urea, Carbonic anhydrase 2, ZINC ION
Authors:De Simone, G, Alterio, V, Esposito, D, Di Fiore, A.
Deposit date:2016-07-29
Release date:2016-10-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Benzoxaborole as a new chemotype for carbonic anhydrase inhibition.
Chem.Commun.(Camb.), 52, 2016
5F6Q
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BU of 5f6q by Molmil
Crystal Structure of Metallothiol Transferase from Bacillus anthracis str. Ames
Descriptor: CHLORIDE ION, GLYCEROL, Metallothiol transferase FosB 2, ...
Authors:Maltseva, N, Kim, Y, Osipiuk, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-12-06
Release date:2015-12-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Crystal Structure of Metallothiol Transferase from Bacillus anthracis str. Ames
To Be Published
5ZX8
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BU of 5zx8 by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Thermus thermophilus
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CITRATE ANION, Peptidyl-tRNA hydrolase
Authors:Matsumoto, A, Uehara, U, Shimizu, Y, Ueda, T, Uchiumi, T, Ito, K.
Deposit date:2018-05-18
Release date:2018-09-26
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-resolution crystal structure of peptidyl-tRNA hydrolase from Thermus thermophilus.
Proteins, 87, 2019
6H9Y
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BU of 6h9y by Molmil
Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Outer capsid protein VP4, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Ciges-Tomas, J.R, Gozalbo-Rovira, R, Vila-Vicent, S, Buesa, J, Santiso-Bellon, C, Monedero, V, Yebra, M.J, Rodriguez-Diaz, J, Marina, A.
Deposit date:2018-08-06
Release date:2019-06-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens.
Plos Pathog., 15, 2019
6OY1
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BU of 6oy1 by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR2-26
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-[({4-[(1R)-1,2-dihydroxyethyl]phenyl}sulfonyl)(2-ethylbutyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate, Protease NL4-3, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-05-14
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019
6HAM
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BU of 6ham by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
4QAF
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BU of 4qaf by Molmil
Crystal structure of an engineered lipocalin (Anticalin) in complex with VEGF(8-109)
Descriptor: 10-{(1R,2R)-2-[(2E)-hex-2-en-1-yl]cyclopropyl}decanoic acid, ACETATE ION, Lipocalin-1, ...
Authors:Giese, T, Skerra, A.
Deposit date:2014-05-04
Release date:2015-05-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of an Anticalin with specific blocking activity towards human vascular endothelial growth factor (VEGF) reveals plasticity of the lipocalin fold
To be Published
6XHN
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BU of 6xhn by Molmil
Covalent complex of SARS-CoV main protease with 4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-3-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide
Descriptor: (3S)-3-{[N-(4-methoxy-1H-indole-2-carbonyl)-L-leucyl]amino}-2-oxo-4-[(3S)-2-oxopyrrolidin-3-yl]butyl 2-cyanobenzoate, 1,2-ETHANEDIOL, 3C-like proteinase
Authors:Gajiwala, K.S, Ferre, R.A, Ryan, K, Stewart, A.E.
Deposit date:2020-06-19
Release date:2020-07-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.377 Å)
Cite:Discovery of Ketone-Based Covalent Inhibitors of Coronavirus 3CL Proteases for the Potential Therapeutic Treatment of COVID-19.
J.Med.Chem., 63, 2020
8A9U
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BU of 8a9u by Molmil
Full AAV3B-VP1KO virion
Descriptor: Capsid protein VP1
Authors:Arriaga, I, Abrescia, N.G.A.
Deposit date:2022-06-29
Release date:2022-09-21
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cellular and Structural Characterization of VP1 and VP2 Knockout Mutants of AAV3B Serotype and Implications for AAV Manufacturing.
Hum Gene Ther, 33, 2022
6RIE
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BU of 6rie by Molmil
Structure of Vaccinia Virus DNA-dependent RNA polymerase co-transcriptional capping complex
Descriptor: DNA-dependent RNA polymerase subunit rpo132, DNA-dependent RNA polymerase subunit rpo147, DNA-dependent RNA polymerase subunit rpo18, ...
Authors:Hillen, H.S, Bartuli, J, Grimm, C, Dienemann, C, Bedenk, K, Szalar, A, Fischer, U, Cramer, P.
Deposit date:2019-04-23
Release date:2019-12-18
Last modified:2019-12-25
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes.
Cell, 179, 2019
7M8T
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BU of 7m8t by Molmil
Crystal Structure of HLA-A*11:01 in complex with NSASFSTFK, an 9-mer epitope from SARS-CoV-2 spike (S370-378)
Descriptor: Beta-2-microglobulin, CALCIUM ION, CHLORIDE ION, ...
Authors:Gras, S, Nguyen, A.T, Szeto, C.
Deposit date:2021-03-30
Release date:2021-06-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:SARS-CoV-2 Spike-Derived Peptides Presented by HLA Molecules
Biophysica, 1, 2021
5LF1
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BU of 5lf1 by Molmil
Human 20S proteasome complex with Dihydroeponemycin at 2.0 Angstrom
Descriptor: CHLORIDE ION, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ...
Authors:Schrader, J, Henneberg, F, Mata, R, Tittmann, K, Schneider, T.R, Stark, H, Bourenkov, G, Chari, A.
Deposit date:2016-06-30
Release date:2016-08-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design.
Science, 353, 2016
6LFH
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BU of 6lfh by Molmil
X-ray crystal structure of chemically synthesized human lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kar, A, Das, A, Mandal, K.
Deposit date:2019-12-02
Release date:2020-07-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Efficient Chemical Protein Synthesis using Fmoc-Masked N-Terminal Cysteine in Peptide Thioester Segments.
Angew.Chem.Int.Ed.Engl., 59, 2020
5I0R
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BU of 5i0r by Molmil
D-cysteine bound C93A mutant of Cysteine Dioxygenase at pH 8
Descriptor: CHLORIDE ION, Cysteine dioxygenase type 1, D-CYSTEINE, ...
Authors:Kean, K.M, Driggers, C.M, Karplus, P.A.
Deposit date:2016-02-04
Release date:2016-12-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase.
J. Mol. Biol., 428, 2016
6O5G
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BU of 6o5g by Molmil
Calmodulin in complex with isomalbrancheamide D
Descriptor: (5aS,12aS,13aS)-9-bromo-8-chloro-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7 ,6-b]carbazol-14-one, CALCIUM ION, Calmodulin-1, ...
Authors:Beyett, T.S, Fraley, A.E, Tesmer, J.J.G.
Deposit date:2019-03-02
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Perturbation of the interactions of calmodulin with GRK5 using a natural product chemical probe.
Proc.Natl.Acad.Sci.USA, 116, 2019
6U66
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BU of 6u66 by Molmil
Structure of the trimeric globular domain of Adiponectin
Descriptor: Adiponectin, CALCIUM ION, SODIUM ION
Authors:Pascolutti, R, Kruse, A.C, Erlandson, S.C, Burri, D.J, Zheng, S.
Deposit date:2019-08-29
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Mapping and engineering the interaction between adiponectin and T-cadherin.
J.Biol.Chem., 295, 2020

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