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PDB: 89111 results

7A30
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BU of 7a30 by Molmil
Intertwined dimer of the c-Src SH3 domain mutant Q128E
Descriptor: DI(HYDROXYETHYL)ETHER, Proto-oncogene tyrosine-protein kinase Src, SULFATE ION, ...
Authors:Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
Deposit date:2020-08-18
Release date:2021-08-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Intertwined dimer of the c-Src SH3 domain mutant Q128E
To be published
6I6K
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BU of 6i6k by Molmil
Papaver somniferum O-methyltransferase 1
Descriptor: (13aS)-3,10-dimethoxy-5,8,13,13a-tetrahydro-6H-isoquino[3,2-a]isoquinoline-2,9-diol, O-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Cabry, M.P, Offen, W.A, Winzer, T, Li, Y, Graham, I.A, Davies, G.J, Saleh, P.
Deposit date:2018-11-15
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Papaver somniferum O-Methyltransferase 1 Reveals Initiation of Noscapine Biosynthesis with Implications for Plant Natural Product Methylation
Acs Catalysis, 2019
4QRH
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BU of 4qrh by Molmil
Molecular mechanism and evolution of guanylate kinase regulation by (p)ppGpp
Descriptor: 1,2-ETHANEDIOL, Guanylate kinase, MAGNESIUM ION, ...
Authors:Liu, K, Krasny, K, Myers, A.R, Satyshur, K.A, Keck, J.L, Wnag, J.D.
Deposit date:2014-07-01
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular Mechanism and Evolution of Guanylate Kinase Regulation by (p)ppGpp.
Mol.Cell, 57, 2015
6I2Y
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BU of 6i2y by Molmil
Human STK10 bound to Foretinib
Descriptor: N-(3-fluoro-4-{[6-methoxy-7-(3-morpholin-4-ylpropoxy)quinolin-4-yl]oxy}phenyl)-N'-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide, Serine/threonine-protein kinase 10
Authors:Sorrell, F.J, Berger, B.-T, Oerum, S, von Delft, F, Bountra, C, Arrowsmith, C, Edwards, A.M, Knapp, S, Elkins, J.M.
Deposit date:2018-11-02
Release date:2018-12-12
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Human STK10 bound to GW683134
To Be Published
6U1I
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Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphorylated D-cycloserine, Mg2+ and K+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase, MAGNESIUM ION, ...
Authors:Pederick, J.L, Bruning, J.B, Thompson, A.P.
Deposit date:2019-08-15
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations.
J.Biol.Chem., 295, 2020
6RUH
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BU of 6ruh by Molmil
Ni-substituted alpha-Keggin bound to Proteinase K solved by MR
Descriptor: Ni-substituted alpha-Keggin, Proteinase K, SULFATE ION
Authors:Breibeck, J, Bijelic, A, Rompel, A.
Deposit date:2019-05-28
Release date:2019-09-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Transition metal-substituted Keggin polyoxotungstates enabling covalent attachment to proteinase K upon co-crystallization.
Chem.Commun.(Camb.), 55, 2019
6EHN
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BU of 6ehn by Molmil
Structural insight into a promiscuous CE15 esterase from the marine bacterial metagenome
Descriptor: Carbohydrate esterase MZ0003, GLYCEROL
Authors:Helland, R, De Santi, C, Gani, O, Williamson, A.K.
Deposit date:2017-09-13
Release date:2018-03-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insight into a CE15 esterase from the marine bacterial metagenome.
Sci Rep, 7, 2017
6RRS
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BU of 6rrs by Molmil
T=3 MS2 Virus-like particle
Descriptor: Capsid protein
Authors:de Martin Garrido, N, Ramlaul, K, Simpson, P.A, Crone, M.A, Freemont, P.S, Aylett, C.H.S.
Deposit date:2019-05-20
Release date:2020-07-08
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Bacteriophage MS2 displays unreported capsid variability assembling T = 4 and mixed capsids.
Mol.Microbiol., 113, 2020
4XMR
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BU of 4xmr by Molmil
Crystal structure of the sensory domain of the Campylobacter jejuni chemoreceptor Tlp3 (CcmL) with isoleucine bound.
Descriptor: ISOLEUCINE, Putative methyl-accepting chemotaxis signal transduction protein, SULFATE ION
Authors:Roujeinikova, A, Liu, Y.C, Machuca, M.A.
Deposit date:2015-01-15
Release date:2015-11-04
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis for amino-acid recognition and transmembrane signalling by tandem Per-Arnt-Sim (tandem PAS) chemoreceptor sensory domains.
Acta Crystallogr.,Sect.D, 71, 2015
5U5Q
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BU of 5u5q by Molmil
12 Subunit RNA Polymerase II at Room Temperature collected using SFX
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Bushnell, D.A, Oberthur, D, Mariani, V, Yefanov, O, Tolstikova, A, Barty, A.
Deposit date:2016-12-07
Release date:2017-03-29
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Double-flow focused liquid injector for efficient serial femtosecond crystallography.
Sci Rep, 7, 2017
6XNE
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BU of 6xne by Molmil
GCN4-p1 Peptide Trimer with p-methylphenylalanine residue at position 16 (me-F16)
Descriptor: GCN4-p1 Peptide with A16, GCN4-p1 Peptide with me-F16, MAGNESIUM ION, ...
Authors:Rowe Hartje, R.K, Czarny, R.S, Ho, A.
Deposit date:2020-07-02
Release date:2021-07-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Engineering Specific Protein-Protein Interactions Through Halogen and Hydrogen Bonds
To Be Published
4XN5
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BU of 4xn5 by Molmil
Crystal Structure of Met260Ala mutant of E. coli Aminopeptidase N in complex with L-Phenylalanine
Descriptor: Aminopeptidase N, GLYCEROL, MALONATE ION, ...
Authors:Addlagatta, A, Gumpena, R, Kishor, C.
Deposit date:2015-01-15
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal Structure of Met260Ala mutant of E. coli Aminopeptidase N in complex with L-Phenylalanine
To Be Published
7A2F
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BU of 7a2f by Molmil
Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-656
Descriptor: 1-cycloheptyl-3-{4-methoxy-3-[2-(4-methoxyphenyl)ethoxy]phenyl}-4,4-dimethyl-4,5-dihydro-1H-pyrazol-5-one, FORMIC ACID, GLYCEROL, ...
Authors:Singh, A.K, Blaazer, A.R, Zara, L, de Esch, I.J.P, Leurs, R, Brown, D.G.
Deposit date:2020-08-17
Release date:2021-08-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-656
To be published
8AIE
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BU of 8aie by Molmil
Crystal structure of D-amino acid aminotransferase from Aminobacterium colombiense complexed with D-cycloserine
Descriptor: 3-azanyloxy-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]propanoic acid, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aminotransferase class IV, ...
Authors:Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shilova, S.A, Popov, V.O, Bezsudnova, E.Y.
Deposit date:2022-07-26
Release date:2022-11-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:3D Structure of D-Аmino Acid Тransaminase from Aminobacterium colombiense in Complex with D-Cycloserine
Crystallography Reports, 68, 2023
7TJF
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BU of 7tjf by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA, 84 bp ARS1, ...
Authors:Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
Deposit date:2022-01-16
Release date:2023-01-18
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
5JY5
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BU of 5jy5 by Molmil
Crystal structure of Thioredoxin 1 from Cryptococcus neoformans at 1.8 Angstroms resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, SULFATE ION, ...
Authors:Bravo-Chaucanes, C.P, Abadio, A.K.R, Kioshima, E.S, Felipe, M.S.S, Barbosa, J.A.R.G.
Deposit date:2016-05-13
Release date:2017-06-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Thioredoxin 1 from Cryptococcus neoformans at 1.8 Angstroms resolution
To Be Published
7A28
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BU of 7a28 by Molmil
Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-617
Descriptor: 1-cycloheptyl-3-(4-methoxy-3-{4-[4-(1H-1,2,3,4-tetrazol-5-yl)phenoxy]butoxy}phenyl)-4,4-dimethyl-4,5-dihydro-1H-pyrazol-5-one, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Singh, A.K, Blaazer, A.R, Zara, L, de Esch, I.J.P, Leurs, R, Brown, D.G.
Deposit date:2020-08-16
Release date:2021-08-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-617
To be published
6IBI
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BU of 6ibi by Molmil
Copper binding protein from Laetisaria arvalis (LaX325)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Auxiliary activity CAZyme, COPPER (II) ION, ...
Authors:Frandsen, K.E.H, Tandrup, T, Labourel, A, Haon, M, Berrin, J.-G, Lo Leggio, L.
Deposit date:2018-11-30
Release date:2019-11-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:A fungal family of lytic polysaccharide monooxygenase-like copper proteins.
Nat.Chem.Biol., 16, 2020
5MJV
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BU of 5mjv by Molmil
Rebuild and re-refined model for Human Parechovirus 1
Descriptor: CAPSID SUBUNIT VP0, CAPSID SUBUNIT VP1, CAPSID SUBUNIT VP3, ...
Authors:Shakeel, S, Dykeman, E.C, White, S.J, Ora, A, Cockburn, J.J.B, Butcher, S.J, Stockley, P.G, Twarock, R.
Deposit date:2016-12-01
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Genomic RNA folding mediates assembly of human parechovirus.
Nat Commun, 8, 2017
6RUQ
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BU of 6ruq by Molmil
Structure of GluA2cryst in complex the antagonist ZK200775 and the negative allosteric modulator GYKI53655 at 4.65 A resolution
Descriptor: (8R)-5-(4-aminophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide, Glutamate receptor 2, beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Krintel, C, Venskutonyte, R, Mirza, O.A, Gajhede, M, Kastrup, J.S.
Deposit date:2019-05-28
Release date:2020-06-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (4.65 Å)
Cite:Binding of a negative allosteric modulator and competitive antagonist can occur simultaneously at the ionotropic glutamate receptor GluA2.
Febs J., 288, 2021
4XPV
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BU of 4xpv by Molmil
Neutron and X-ray structure analysis of xylanase: N44D at pH6
Descriptor: Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Wan, Q, Park, J.M, Riccardi, D.M, Hanson, L.B, Fisher, Z, Smith, J.C, Ostermann, A, Schrader, T, Graham, D.E, Coates, L, Langan, P, Kovalevsky, A.Y.
Deposit date:2015-01-18
Release date:2015-09-30
Last modified:2023-09-27
Method:NEUTRON DIFFRACTION (1.7 Å), X-RAY DIFFRACTION
Cite:Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015
5KEE
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BU of 5kee by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS L25K/I92F at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Skerritt, L.A, Caro, J.A, Heroux, A, Schlessman, J.L, Garcia-Moreno E, B.
Deposit date:2016-06-09
Release date:2016-06-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Staphylococcal nuclease variant Delta+PHS L25K/I92F at cryogenic temperature
To be Published
4XQZ
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BU of 4xqz by Molmil
Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by chloride and MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Rohner, M, Medina-Molner, A, Spingler, B.
Deposit date:2015-01-20
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:N,N,O and N,O,N Meridional cis Coordination of Two Guanines to Copper(II) by d(CGCGCG)2.
Inorg.Chem., 55, 2016
7TSW
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BU of 7tsw by Molmil
Crystal Structure Of Human NADH-Cytochrome B5 Reductase T117D Mutant
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3
Authors:Zheng, A, Thibodeau, P.H.
Deposit date:2022-01-31
Release date:2023-02-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure Of wild-type Human NADH-Cytochrome B5 Reductase and mutants
To be published
6I1Q
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BU of 6i1q by Molmil
Iodide structure of Trichoderma reesei Carbohydrate-Active Enzymes Family AA12
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Turbe-Doan, A, Record, E, Lombard, V, Kumar, R, Henrissat, B, Levasseur, A, Garron, M.L.
Deposit date:2018-10-30
Release date:2019-11-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The functional and structural characterization ofTrichoderma reeseidehydrogenase belonging to the PQQ dependent family of Carbohydrate-Active Enzymes Family AA12.
Appl.Environ.Microbiol., 2019

224931

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