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PDB: 88608 results

7O6S
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BU of 7o6s by Molmil
Crystal structure of a shortened IpgC variant in complex with N-(2H-1,3-benzodioxol-5-ylmethyl)cyclopentanamine
Descriptor: CHLORIDE ION, Chaperone protein IpgC, DI(HYDROXYETHYL)ETHER, ...
Authors:Gardonyi, M, Heine, A, Klebe, G.
Deposit date:2021-04-12
Release date:2022-04-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of a shortened IpgC variant in complex with N-(2H-1,3-benzodioxol-5-ylmethyl)cyclopentanamine
To be published
7OB6
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BU of 7ob6 by Molmil
CPR-C4 - a conserved novel protease from the Candidate Phyla Radiation
Descriptor: CPR-C4, ZINC ION
Authors:Cornish, K.A.S, Pohl, E.
Deposit date:2021-04-21
Release date:2022-04-27
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.598 Å)
Cite:CPR-C4 is a highly conserved novel protease from the Candidate Phyla Radiation with remote structural homology to human vasohibins.
J.Biol.Chem., 298, 2022
7OD5
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BU of 7od5 by Molmil
F(M197)H mutant structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LSP crystallization
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate, 1,2-ETHANEDIOL, ...
Authors:Gabdulkhakov, A.G, Selikhanov, G.K, Fufina, T.Y, Vasilieva, L.G.
Deposit date:2021-04-28
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray structure of the Rhodobacter sphaeroides reaction center with an M197 Phe→His substitution clarifies the properties of the mutant complex.
Iucrj, 9, 2022
4RUZ
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BU of 4ruz by Molmil
Crystal structure of human Carbonic Anhydrase II in complex with 4-ethoxybenzenesulfonamide
Descriptor: 4-ethoxybenzenesulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Pinard, M.A, Mckenna, R.
Deposit date:2014-11-23
Release date:2015-04-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:A class of sulfonamide carbonic anhydrase inhibitors with neuropathic pain modulating effects.
Bioorg.Med.Chem., 23, 2015
4S0K
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BU of 4s0k by Molmil
Biphenylalanine modified threonyl-tRNA synthetase from Pyrococcus abyssi: 11BIF, 42F, 79V, and 123A mutant
Descriptor: DI(HYDROXYETHYL)ETHER, Threonine--tRNA ligase
Authors:Pearson, A.D, Mills, J.H, Song, Y, Nasertorabi, F, Han, G.W, Baker, D, Stevens, R.C, Schultz, P.G.
Deposit date:2014-12-31
Release date:2015-03-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Transition states. Trapping a transition state in a computationally designed protein bottle.
Science, 347, 2015
4S3O
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BU of 4s3o by Molmil
PCGF5-RING1B-UbcH5c complex
Descriptor: E3 ubiquitin-protein ligase RING2, Polycomb group RING finger protein 5, Ubiquitin-conjugating enzyme E2 D3, ...
Authors:Taherbhoy, A.M, Cochran, A.G.
Deposit date:2015-03-23
Release date:2015-07-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:BMI1-RING1B is an autoinhibited RING E3 ubiquitin ligase.
Nat Commun, 6, 2015
6WLK
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BU of 6wlk by Molmil
Apo ATP-TTR-3 models, 10.0 Angstrom resolution
Descriptor: RNA (130-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
4RS7
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BU of 4rs7 by Molmil
Structure of pNOB8 ParB-C
Descriptor: ParB-C
Authors:Schumacher, M.A, Lee, J, Chinnam, N.B, Barilla, D.
Deposit date:2014-11-07
Release date:2015-09-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages.
Science, 349, 2015
4RU0
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BU of 4ru0 by Molmil
The crystal structure of abc transporter permease from pseudomonas fluorescens group
Descriptor: 3,6,9,12,15-PENTAOXAHEPTADECANE, GLYCEROL, Putative branched-chain amino acid ABC transporter, ...
Authors:Wu, R, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-11-17
Release date:2014-11-26
Method:X-RAY DIFFRACTION (2.442 Å)
Cite:The crystal structure of abc transporter permease from pseudomonas fluorescens group
To be Published
4TPS
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BU of 4tps by Molmil
Sporulation Inhibitor of DNA Replication, SirA, in complex with Domain I of DnaA
Descriptor: ACETATE ION, BETA-MERCAPTOETHANOL, Chromosomal replication initiator protein DnaA, ...
Authors:Jameson, K.H, Turkenburg, J.P, Fogg, M.J, Grahl, A, Wilkinson, A.J.
Deposit date:2014-06-09
Release date:2014-07-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and interactions of the Bacillus subtilis sporulation inhibitor of DNA replication, SirA, with domain I of DnaA.
Mol.Microbiol., 93, 2014
4TQN
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BU of 4tqn by Molmil
Crystal structure of the bromodomain of human CREBBP in complex with UL04
Descriptor: 1,2-ETHANEDIOL, 3-[(5-acetyl-2-ethoxyphenyl)carbamoyl]benzoic acid, CREB-binding protein
Authors:Dong, J, Caflisch, A.
Deposit date:2014-06-11
Release date:2015-06-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Discovery of CREBBP Bromodomain Inhibitors by High-Throughput Docking and Hit Optimization Guided by Molecular Dynamics.
J.Med.Chem., 59, 2016
7OIW
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BU of 7oiw by Molmil
Structure of S. aureus Rel catalytic domains in complex with pppGpp
Descriptor: GLYCEROL, GTP pyrophosphokinase, IODIDE ION, ...
Authors:Garcia-Pino, A.
Deposit date:2021-05-12
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Structure of S. aureus Rel catalytic domains in complex with pppGpp
To Be Published
4RJY
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BU of 4rjy by Molmil
Crystal structure of E. coli L-Threonine Aldolase in complex with a non-covalently uncleaved bound L-serine substrate
Descriptor: Low specificity L-threonine aldolase, SERINE, SODIUM ION
Authors:Safo, M.K, Chowdhury, N, Gandhi, A.K.
Deposit date:2014-10-11
Release date:2014-10-29
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis of E. colil-threonine aldolase catalytic inactivation at low pH.
Biochim.Biophys.Acta, 1854, 2015
4S02
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BU of 4s02 by Molmil
Biphenylalanine modified threonyl-tRNA synthetase from Pyrococcus abyssi: I11BIF, F42W, Y79A, and F123Y mutant
Descriptor: DI(HYDROXYETHYL)ETHER, Threonine--tRNA ligase
Authors:Pearson, A.D, Mills, J.H, Song, Y, Nasertorabi, F, Han, G.W, Baker, D, Stevens, R.C, Schultz, P.G.
Deposit date:2014-12-30
Release date:2015-03-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Transition states. Trapping a transition state in a computationally designed protein bottle.
Science, 347, 2015
7O3J
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BU of 7o3j by Molmil
O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-01
Release date:2022-06-22
Last modified:2022-07-20
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
6WLQ
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BU of 6wlq by Molmil
Apo SAM-IV riboswitch models, 4.7 Angstrom resolution
Descriptor: RNA (119-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
4TMR
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BU of 4tmr by Molmil
Crystal structure of ternary complex of Plasmodium vivax SHMT with glycine and a novel pyrazolopyran 99S: methyl 5-{3-[(4S)-6-amino-5-cyano-3-methyl-4-(propan-2-yl)-2,4-dihydropyrano[2,3-c]pyrazol-4-yl]-5-cyanophenyl}thiophene-2-carboxylate .
Descriptor: CHLORIDE ION, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], Serine hydroxymethyltransferase, ...
Authors:Chitnumsub, P, Jaruwat, A, Leartsakulpanich, U, Witschel, M.C.
Deposit date:2014-06-02
Release date:2015-03-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Inhibitors of Plasmodial Serine Hydroxymethyltransferase (SHMT): Cocrystal Structures of Pyrazolopyrans with Potent Blood- and Liver-Stage Activities.
J.Med.Chem., 58, 2015
7OFF
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BU of 7off by Molmil
Keap1 kelch domain bound to a small molecule inhibitor of the Keap1-Nrf2 protein-protein interaction
Descriptor: (2~{R})-2-[(9-oxidanylidenefluoren-4-yl)carbonylamino]-2-phenyl-ethanoic acid, DIMETHYL SULFOXIDE, Kelch-like ECH-associated protein 1, ...
Authors:Narayanan, D, Bach, A, Gajhede, M.
Deposit date:2021-05-04
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Development of Noncovalent Small-Molecule Keap1-Nrf2 Inhibitors by Fragment-Based Drug Discovery.
J.Med.Chem., 65, 2022
7OFE
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BU of 7ofe by Molmil
Keap1 kelch domain bound to a small molecule inhibitor of the Keap1-Nrf2 protein-protein interaction
Descriptor: 2-[(9-oxidanylidenefluoren-4-yl)carbonylamino]ethanoic acid, DIMETHYL SULFOXIDE, Kelch-like ECH-associated protein 1, ...
Authors:Narayanan, D, Bach, A, Gajhede, M.
Deposit date:2021-05-04
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Development of Noncovalent Small-Molecule Keap1-Nrf2 Inhibitors by Fragment-Based Drug Discovery.
J.Med.Chem., 65, 2022
7O9U
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BU of 7o9u by Molmil
Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus
Descriptor: Cytochrome c552, HEME C
Authors:Britikov, V.V, Britikova, E.V, Altukhov, D.A, Timofeev, V.I, Dergousova, N.I, Rakitina, T.V, Tikhonova, T.V, Usanov, S.A, Popov, V.O, Bocharov, E.V.
Deposit date:2021-04-17
Release date:2021-05-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Unusual Cytochrome c 552 from Thioalkalivibrio paradoxus : Solution NMR Structure and Interaction with Thiocyanate Dehydrogenase.
Int J Mol Sci, 23, 2022
4RQB
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BU of 4rqb by Molmil
Crystal Structure of a Hypoxanthine Phosphoribosyltransferase (target ID NYSGRC-029686) from Staphylococcus aureus (tetragonal space group)
Descriptor: CHLORIDE ION, GLYCEROL, Hypoxanthine phosphoribosyltransferase, ...
Authors:Ghosh, A, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-10-31
Release date:2014-11-26
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structure of a Hypoxanthine Phosphoribosyltransferase (target ID NYSGRC-029686) from Staphylococcus aureus (tetragonal space group)
To be Published
7PCY
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BU of 7pcy by Molmil
THE CRYSTAL STRUCTURE OF PLASTOCYANIN FROM A GREEN ALGA, ENTEROMORPHA PROLIFERA
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Collyer, C.A, Guss, J.M, Freeman, H.C.
Deposit date:1989-09-22
Release date:1990-07-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of plastocyanin from a green alga, Enteromorpha prolifera.
J.Mol.Biol., 211, 1990
4RYN
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BU of 4ryn by Molmil
Crystal structure of BcTSPO, type1 monomer
Descriptor: CACODYLATE ION, DODECYL-ALPHA-D-MALTOSIDE, Integral membrane protein, ...
Authors:Guo, Y, Liu, Q, Hendrickson, W.A, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2014-12-15
Release date:2015-02-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Protein structure. Structure and activity of tryptophan-rich TSPO proteins.
Science, 347, 2015
4TNB
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BU of 4tnb by Molmil
Crystal Structure of G Protein-Coupled Receptor Kinase 5 in Complex with Sangivamycin
Descriptor: G protein-coupled receptor kinase 5, SANGIVAMYCIN
Authors:Bhardwaj, A, Komolov, K.E, Benovic, J.L.
Deposit date:2014-06-03
Release date:2015-06-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.113 Å)
Cite:Atomic Structure of G Protein-Coupled Receptor Kinase 5 (GRK5) Reveals Distinct Structural Features Novel for GRKs.
J.Biol.Chem., 2015
6WLM
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BU of 6wlm by Molmil
F. nucleatum glycine riboswitch with glycine models, 7.4 Angstrom resolution
Descriptor: RNA (171-MER)
Authors:Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
Deposit date:2020-04-20
Release date:2020-07-08
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020

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數據於2024-07-24公開中

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