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PDB: 89111 results

5KNE
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BU of 5kne by Molmil
CryoEM Reconstruction of Hsp104 Hexamer
Descriptor: Heat shock protein 104, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Yokom, A.L, Gates, S.N, Jackrel, M.E, Mack, K.L, Su, M, Shorter, J, Southworth, D.R.
Deposit date:2016-06-28
Release date:2016-07-27
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (5.64 Å)
Cite:Spiral architecture of the Hsp104 disaggregase reveals the basis for polypeptide translocation.
Nat.Struct.Mol.Biol., 23, 2016
7L0I
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BU of 7l0i by Molmil
Ligand-free YopH G352T
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Protein-tyrosine-phosphatase
Authors:Shen, R.D, Hengge, A.C, Johnson, S.J.
Deposit date:2020-12-11
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Single Residue on the WPD-Loop Affects the pH Dependency of Catalysis in Protein Tyrosine Phosphatases.
Jacs Au, 1, 2021
6E3Y
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BU of 6e3y by Molmil
Cryo-EM structure of the active, Gs-protein complexed, human CGRP receptor
Descriptor: Calcitonin gene-related peptide 1, Calcitonin gene-related peptide type 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Liang, Y.L, Khoshouei, M, Deganutti, G, Glukhova, A, Koole, C, Peat, T.S, Radjainia, M, Plitzko, J.M, Baumeister, W, Miller, L.J, Hay, D.L, Christopoulos, A, Reynolds, C.A, Wootten, D, Sexton, P.M.
Deposit date:2018-07-16
Release date:2018-09-19
Last modified:2020-01-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of the active, Gs-protein complexed, human CGRP receptor.
Nature, 561, 2018
5V1M
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BU of 5v1m by Molmil
Structure of human Usb1 with uridine 5'-monophosphate
Descriptor: CHLORIDE ION, GLYCEROL, U6 snRNA phosphodiesterase, ...
Authors:Montemayor, E.J, Didychuk, A.L, Butcher, S.E.
Deposit date:2017-03-02
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
6BRJ
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BU of 6brj by Molmil
DDR1 bound to VX-680
Descriptor: CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE, Epithelial discoidin domain-containing receptor 1
Authors:Georghiou, G, Seeliger, M.A.
Deposit date:2017-11-30
Release date:2018-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.231 Å)
Cite:What Makes a Kinase Promiscuous for Inhibitors?
Cell Chem Biol, 26, 2019
3K9F
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BU of 3k9f by Molmil
Detailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases
Descriptor: (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid, DNA (5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3'), ...
Authors:Laponogov, I, Pan, X.-S, Veselkov, D.A, Fisher, L.M, Sanderson, M.R.
Deposit date:2009-10-15
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis of Gate-DNA Breakage and Resealing by Type II Topoisomerases
Plos One, 5, 2010
5A44
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BU of 5a44 by Molmil
Structure of Bacteriorhodopsin obtained from 20um crystals by multi crystal data collection
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, BACTERIORHODOPSIN, HEPTANE, ...
Authors:Zander, U, Bourenkov, G, Popov, A.N, de Sanctis, D, McCarthy, A.A, Svensson, O, Round, E.S, Gordeliy, V.I, Mueller-Dieckmann, C, Leonard, G.A.
Deposit date:2015-06-05
Release date:2015-11-11
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Meshandcollect: An Automated Multi-Crystal Data-Collection Workflow for Synchrotron Macromolecular Crystallography Beamlines.
Acta Crystallogr.,Sect.D, 71, 2015
6QXN
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BU of 6qxn by Molmil
Crystal structure of the CCA-adding enzyme of a psychrophilic organism in complex with CTP
Descriptor: ACETATE ION, CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, ...
Authors:de Wijn, R, Rollet, K, Bluhm, A, Hennig, O, Betat, H, Moerl, M, Lorber, B, Sauter, C.
Deposit date:2019-03-07
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:CCA-addition in the cold: Structural characterization of the psychrophilic CCA-adding enzyme from the permafrost bacterium Planococcus halocryophilus
Comput Struct Biotechnol J, 2021
5A6Q
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BU of 5a6q by Molmil
Native structure of the LecB lectin from Pseudomonas aeruginosa strain PA14
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, FUCOSE-BINDING LECTIN PA-IIL, ...
Authors:Sommer, R, Wagner, S, Varrot, A, Khaledi, A, Haussler, S, Imberty, A, Titz, A.
Deposit date:2015-06-30
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The virulence factor LecB varies in clinical isolates: consequences for ligand binding and drug discovery.
Chem Sci, 7, 2016
5A6Z
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BU of 5a6z by Molmil
Structure of the LecB lectin from Pseudomonas aeruginosa strain PA14 in complex with lewis a
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, LECB, ...
Authors:Sommer, R, Wagner, S, Varrot, A, Khaledi, A, Haussler, S, Imberty, A, Titz, A.
Deposit date:2015-07-02
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The virulence factor LecB varies in clinical isolates: consequences for ligand binding and drug discovery.
Chem Sci, 7, 2016
6ME4
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BU of 6me4 by Molmil
XFEL crystal structure of human melatonin receptor MT1 in complex with 2-iodomelatonin
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, N-[2-(2-iodo-5-methoxy-1H-indol-3-yl)ethyl]acetamide, ...
Authors:Stauch, B, Johansson, L.C, McCorvy, J.D, Patel, N, Han, G.W, Gati, C, Batyuk, A, Ishchenko, A, Brehm, W, White, T.A, Michaelian, N, Madsen, C, Zhu, L, Grant, T.D, Grandner, J.M, Olsen, R.H.J, Tribo, A.R, Weierstall, U, Roth, B.L, Katritch, V, Liu, W, Cherezov, V.
Deposit date:2018-09-05
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of ligand recognition at the human MT1melatonin receptor.
Nature, 569, 2019
4TZK
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BU of 4tzk by Molmil
Crystal structure of Mycobacterium tuberculosis enoyl reductase (INHA) complexed WITH 1-CYCLOHEXYL-N-(3,5-DICHLOROPHENYL)-5-OXOPYRROLIDINE-3-CARBOXAMIDE
Descriptor: (3S)-1-CYCLOHEXYL-N-(3,5-DICHLOROPHENYL)-5-OXOPYRROLIDINE-3-CARBOXAMIDE, Enoyl-[acyl-carrier-protein] reductase [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:He, X, Alian, A, Stroud, R.M, Ortiz de Montellano, P.R.
Deposit date:2014-07-10
Release date:2014-08-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Pyrrolidine carboxamides as a novel class of inhibitors of enoyl acyl carrier protein reductase from Mycobacterium tuberculosis
J. Med. Chem., 2006
8A0E
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BU of 8a0e by Molmil
CryoEM structure of DHS-eIF5A1 complex
Descriptor: Deoxyhypusine synthase, Eukaryotic translation initiation factor 5A, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Wator, E, Wilk, P, Biela, A.P, Rawski, M, Grudnik, P.
Deposit date:2022-05-27
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders.
Nat Commun, 14, 2023
5L7U
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BU of 5l7u by Molmil
Crystal structure of BvGH123 with bound GalNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, CHLORIDE ION, Glycoside hydrolase
Authors:Roth, C, Petricevic, M, John, A, Goddard-Borger, E.D, Davies, G.J, Williams, S.J.
Deposit date:2016-06-03
Release date:2017-03-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation.
Chem. Commun. (Camb.), 52, 2016
4Z6B
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BU of 4z6b by Molmil
YopH W354H Yersinia enterocolitica PTPase in the apo form
Descriptor: ACETATE ION, GLYCEROL, Tyrosine-protein phosphatase YopH
Authors:Moise, G.E, Johnson, S.J, Hengge, A.C.
Deposit date:2015-04-04
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Conservative Tryptophan Mutants of the Protein Tyrosine Phosphatase YopH Exhibit Impaired WPD-Loop Function and Crystallize with Divanadate Esters in Their Active Sites.
Biochemistry, 54, 2015
8EK4
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BU of 8ek4 by Molmil
De novo designed ice-binding proteins from twist-constrained helices
Descriptor: Ice-binding protein TIP-99a
Authors:Bera, A.K, De Haas, R.J.
Deposit date:2022-09-19
Release date:2023-07-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:De novo designed ice-binding proteins from twist-constrained helices.
Proc.Natl.Acad.Sci.USA, 120, 2023
6HI1
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BU of 6hi1 by Molmil
PI3 Kinase Delta in complex with 3[6(morpholin4yl)pyridin2yl]phenol
Descriptor: 3-(6-morpholin-4-ylpyridin-2-yl)phenol, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform
Authors:Convery, M.A, Summers, D, Peace, S.
Deposit date:2018-08-29
Release date:2019-09-11
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:A theoretical and experimental investigation into the conformational bias of aryl cyclopropylpyrans, novel bioisosteres for N-aryl morpholines.
To be published
4Z70
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BU of 4z70 by Molmil
Crystal structure of inorganic pyrophosphatase from Mycobacterium tuberculosis in complex with Ca ions
Descriptor: CALCIUM ION, Inorganic pyrophosphatase
Authors:Pratt, A.C, Biswas, T, Tsodikov, O.V.
Deposit date:2015-04-06
Release date:2015-08-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and computational dissection of the catalytic mechanism of the inorganic pyrophosphatase from Mycobacterium tuberculosis.
J.Struct.Biol., 192, 2015
5HJX
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BU of 5hjx by Molmil
Structure function studies of R. palustris RubisCO (A47V mutant; CABP-bound)
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Arbing, M.A, Shin, A, Satagopan, S, North, J.A, Tabita, F.R.
Deposit date:2016-01-13
Release date:2017-01-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Structure function studies of R. palustris RubisCO.
To Be Published
6BWL
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BU of 6bwl by Molmil
X-ray structure of Pal from Bacillus thuringiensis
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Delvaux, N.A, Thoden, J.B, Holden, H.M.
Deposit date:2017-12-15
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Molecular architectures of Pen and Pal: Key enzymes required for CMP-pseudaminic acid biosynthesis in Bacillus thuringiensis.
Protein Sci., 27, 2018
6HPZ
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BU of 6hpz by Molmil
Crystal structure of ENL (MLLT1) in complex with acetyllysine
Descriptor: 1,2-ETHANEDIOL, N(6)-ACETYLLYSINE, Protein ENL
Authors:Heidenreich, D, Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-09-22
Release date:2018-11-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Approach toward Identification of Inhibitory Fragments for Eleven-Nineteen-Leukemia Protein (ENL).
J.Med.Chem., 61, 2018
5UUO
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BU of 5uuo by Molmil
Crystal structure of SARO_2595 from Novosphingobium aromaticivorans
Descriptor: 1,2-ETHANEDIOL, GLUTATHIONE, Glutathione S-transferase-like protein, ...
Authors:Bingman, C.A, Kontur, W.S, Olmsted, C.N, Fox, B.G, Donohue, T.J.
Deposit date:2017-02-17
Release date:2018-02-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Novosphingobium aromaticivoransuses a Nu-class glutathioneS-transferase as a glutathione lyase in breaking the beta-aryl ether bond of lignin.
J. Biol. Chem., 293, 2018
6RBK
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BU of 6rbk by Molmil
Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmetrised
Descriptor: Afp7, Afp8
Authors:Desfosses, A.
Deposit date:2019-04-10
Release date:2019-04-24
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Atomic structures of an entire contractile injection system in both the extended and contracted states.
Nat Microbiol, 4, 2019
6VKX
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BU of 6vkx by Molmil
Crystal structure of the carbohydrate-binding domain VP8* of human P[8] rotavirus strain BM13851
Descriptor: DI(HYDROXYETHYL)ETHER, Outer capsid protein VP4, TETRAETHYLENE GLYCOL
Authors:Xu, S, McGinnis, K.R, Jiang, X, Kennedy, M.A.
Deposit date:2020-01-22
Release date:2021-01-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structural basis of P[II] rotavirus evolution and host ranges under selection of histo-blood group antigens.
Proc.Natl.Acad.Sci.USA, 118, 2021
4ZA8
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BU of 4za8 by Molmil
Crystal structure of A niger Fdc1 in complex with penta-fluorocinnamic acid
Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol, MANGANESE (II) ION, ...
Authors:Payne, K.A.P, Leys, D.
Deposit date:2015-04-13
Release date:2015-06-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition.
Nature, 522, 2015

224931

數據於2024-09-11公開中

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