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PDB: 88675 results

7P2N
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BU of 7p2n by Molmil
E.coli GyrB24 with inhibitor LSJ38 (EBL2684)
Descriptor: 2-[[3,4-bis(chloranyl)-5-methyl-1H-pyrrol-2-yl]carbonylamino]-5-oxidanyl-1,3-benzothiazole-6-carboxylic acid, DNA gyrase subunit B, PHOSPHATE ION
Authors:Stevenson, C.E.M, Lawson, D.M, Maxwell, A.M, Henderson, S.R, Kikelj, D, Zega, A, Zidar, N, Ilas, J, Tomasic, T, Masic, L.P.
Deposit date:2021-07-06
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Exploring the 5-Substituted 2-Aminobenzothiazole-Based DNA Gyrase B Inhibitors Active against ESKAPE Pathogens.
Acs Omega, 8, 2023
6O4I
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BU of 6o4i by Molmil
Structure of ALDH7A1 mutant E399D complexed with alpha-aminoadipate
Descriptor: 1,2-ETHANEDIOL, 2-AMINOHEXANEDIOIC ACID, Alpha-aminoadipic semialdehyde dehydrogenase
Authors:Tanner, J.J, Korasick, D.A, Laciak, A.R.
Deposit date:2019-02-28
Release date:2019-11-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural analysis of pathogenic mutations targeting Glu427 of ALDH7A1, the hot spot residue of pyridoxine-dependent epilepsy.
J. Inherit. Metab. Dis., 43, 2020
6ZV5
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BU of 6zv5 by Molmil
CML1 crystal structure in complex with Lewis a tetrasaccharide
Descriptor: Mucin-binding lectin 1, SULFATE ION, beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Varrot, A, Bleuler-Martinez, S.
Deposit date:2020-07-24
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-function relationship of a novel fucoside-binding fruiting body lectin from Coprinopsis cinerea exhibiting nematotoxic activity.
Glycobiology, 32, 2022
6ZUC
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X-RAY CRYSTAL STRUCTURE OF THE CsPYL1-Lig1-HAB1 TERNARY COMPLEX
Descriptor: 1,4-dimethyl-2-oxidanylidene-~{N}-(phenylmethyl)quinoline-6-sulfonamide, CHLORIDE ION, CSPYL1, ...
Authors:Albert, A, Infantes, L, Benavente, J.L.
Deposit date:2020-07-22
Release date:2021-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure-guided engineering of a receptor-agonist pair for inducible activation of the ABA adaptive response to drought.
Sci Adv, 9, 2023
6QUL
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BU of 6qul by Molmil
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Scaiola, A, Leibundgut, M, Boehringer, D, Ritz, D.
Deposit date:2019-02-27
Release date:2019-04-10
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of translation inhibition by cadazolid, a novel quinoxolidinone antibiotic.
Sci Rep, 9, 2019
6WPM
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BU of 6wpm by Molmil
Crystal structure of a putative oligosaccharide periplasmic-binding protein from Synechococcus sp. MITs9220 in complex with zinc
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, SULFATE ION, ...
Authors:Ford, B.A, Michie, K.A, Paulsen, I.T, Mabbutt, B.C, Shah, B.S.
Deposit date:2020-04-27
Release date:2021-05-12
Last modified:2022-04-27
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220.
Sci Rep, 12, 2022
7ABS
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BU of 7abs by Molmil
Structure of human DCLRE1C/Artemis in complex with DNA - re-evaluation of 6WO0
Descriptor: DNA (5'-D(*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*GP*CP*T)-3'), Protein artemis, ...
Authors:Newman, J.A, Yosaatmadja, Y, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2020-09-08
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition.
Nucleic Acids Res., 49, 2021
6ZYT
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Monomeric streptavidin with a conjugated biotinylated pyrrolidine
Descriptor: 5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)-N-((S)-pyrrolidin-3-yl)pentanamide, SULFATE ION, Streptavidin/Rhizavidin Hybrid
Authors:Nodling, A.R, Lipka-Lloyd, M, Tsai, Y.H, Rizkallah, P, Luk, L.Y.P, Jin, Y.
Deposit date:2020-08-03
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The role of streptavidin and its variants in catalysis by biotinylated secondary amines.
Org.Biomol.Chem., 19, 2021
6OC1
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BU of 6oc1 by Molmil
Crystal structure of human DHODH with TAK-632
Descriptor: Dihydroorotate dehydrogenase (quinone), mitochondrial, FLAVIN MONONUCLEOTIDE, ...
Authors:Durst, M.A, Lavie, A.
Deposit date:2019-03-21
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Metabolic Modifier Screen Reveals Secondary Targets of Protein Kinase Inhibitors within Nucleotide Metabolism.
Cell Chem Biol, 27, 2020
4RZA
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BU of 4rza by Molmil
Pre-mRNA-splicing factor 38A AS 1-205
Descriptor: Pre-mRNA-splicing factor 38A
Authors:Schuetze, T, Ulrich, A, Wahl, M.C.
Deposit date:2014-12-19
Release date:2015-12-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The N-terminal domain of the unusual SR protein hPrp38 is an interaction hub in the spliceosome
To be Published
6ZZ4
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Crystal structure of the PTPN2 C216G mutant
Descriptor: PHOSPHATE ION, Tyrosine-protein phosphatase non-receptor type 2
Authors:Mechaly, A.E, Berthelet, J, Nian, Q, Parlato, M, Cerf-Bensussan, N, Haouz, A, Rodrigues-Lima, F.
Deposit date:2020-08-03
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural characterization of a pathogenic mutant of human protein tyrosine phosphatase PTPN2 (Cys216Gly) that causes very early onset autoimmune enteropathy.
Protein Sci., 31, 2022
8BLP
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BU of 8blp by Molmil
Human Urea Transporter UT-B/UT1 in Complex with Inhibitor UTBinh-14
Descriptor: 10-(4-ethylphenyl)sulfonyl-~{N}-(thiophen-2-ylmethyl)-5-thia-1,8,11,12-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-2(6),3,7,9,11-pentaen-7-amine, CHOLESTEROL HEMISUCCINATE, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Chi, G, Dietz, L, Pike, A.C.W, Maclean, E.M, Mukhopadhyay, S.M.M, Bohstedt, T, Wang, D, Scacioc, A, McKinley, G, Arrowsmith, C.H, Edwards, A, Bountra, C, Fernandez-Cid, A, Burgess-Brown, N.A, Duerr, K.L.
Deposit date:2022-11-10
Release date:2023-10-04
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural characterization of human urea transporters UT-A and UT-B and their inhibition.
Sci Adv, 9, 2023
6OQU
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BU of 6oqu by Molmil
E. coli ATP synthase State 1d
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Stewart, A.G, Sobti, M, Walshe, J.L.
Deposit date:2019-04-29
Release date:2020-06-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures provide insight into how E. coli F1FoATP synthase accommodates symmetry mismatch.
Nat Commun, 11, 2020
7P55
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BU of 7p55 by Molmil
NMR structure of human ACE2 21-42 fragment in HFIP/water 50/50 v/v
Descriptor: Processed angiotensin-converting enzyme 2
Authors:Santoro, A, Buonocore, M, Grimaldi, M, D'Ursi, A.M.
Deposit date:2021-07-14
Release date:2022-07-27
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural analysis of a simplified model reproducing SARS-CoV-2 S RBD/ACE2 binding site.
Heliyon, 8, 2022
8SS3
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BU of 8ss3 by Molmil
Structure of LBD-TMD of AMPA receptor GluA2 in complex with auxiliary subunits TARP gamma-5 and cornichon-2 bound to competitive antagonist ZK and channel blocker spermidine (closed state)
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CHOLESTEROL, Digitonin, ...
Authors:Gangwar, S.P, Yen, L.Y, Yelshanskaya, M.V, Sobolevsky, A.I.
Deposit date:2023-05-08
Release date:2023-09-06
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Modulation of GluA2-gamma 5 synaptic complex desensitization, polyamine block and antiepileptic perampanel inhibition by auxiliary subunit cornichon-2.
Nat.Struct.Mol.Biol., 30, 2023
7NB5
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BU of 7nb5 by Molmil
Structure of EstD11 S144A in complex with naproxen p-nitrophenol ester
Descriptor: (4-nitrophenyl) (2~{S})-2-(6-methoxynaphthalen-2-yl)propanoate, EstD11 S144A
Authors:Miguel-Ruano, V, Rivera, I, Hermoso, J.A.
Deposit date:2021-01-25
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family.
Comput Struct Biotechnol J, 19, 2021
7NE4
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BU of 7ne4 by Molmil
E125A mutant of oligopeptidase B from S. proteomaculans with modified hinge region
Descriptor: Oligopeptidase B, SPERMINE
Authors:Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I.
Deposit date:2021-02-03
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.717 Å)
Cite:First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine.
Biology (Basel), 10, 2021
6ONK
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BU of 6onk by Molmil
Dehaloperoxidase B in complex with substrate 4-Cl-cresol
Descriptor: 1,2-ETHANEDIOL, 4-chloro-2-methylphenol, Dehaloperoxidase B, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-04-22
Release date:2019-09-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Arch.Biochem.Biophys., 673, 2019
7NMU
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BU of 7nmu by Molmil
Crystal structure of human platelet glycoprotein VI in complex with an inhibitory nanobody.
Descriptor: CALCIUM ION, Nanobody 2, Platelet glycoprotein VI
Authors:Slater, A, Jonas, E, Watson, S.P.
Deposit date:2021-02-23
Release date:2021-03-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural characterization of a novel GPVI-nanobody complex reveals a biologically active domain-swapped GPVI dimer.
Blood, 137, 2021
6OOU
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BU of 6oou by Molmil
Crystal structure of HIV-1 Protease NL4-3 L89V Mutant in complex with darunavir
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, NL4-3 PROTEASE, SULFATE ION
Authors:Henes, M, Kosovrasti, K, Lockbaum, G.J, Leidner, F, Nachum, G.S, Nalivaika, E.A, Bolon, D.N.A, KurtYilmaz, N, Schiffer, C.A, Whitfield, T.W.
Deposit date:2019-04-23
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.127 Å)
Cite:Molecular Determinants of Epistasis in HIV-1 Protease: Elucidating the Interdependence of L89V and L90M Mutations in Resistance.
Biochemistry, 58, 2019
7PCV
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BU of 7pcv by Molmil
Crystal structure of RBM5 RRM1-zinc finger
Descriptor: RNA-binding protein 5, ZINC ION
Authors:Soni, K, Jagtap, P.K.A, Sattler, M.
Deposit date:2021-08-04
Release date:2022-08-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structural basis for specific RNA recognition by the alternative splicing factor RBM5.
Nat Commun, 14, 2023
8DML
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BU of 8dml by Molmil
Vibrio parahaemolyticus VtrA/VtrC complex bound to the bile salt chenodeoxycholate
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHENODEOXYCHOLIC ACID, ...
Authors:Tomchick, D.R, Orth, K, Zou, A.J.
Deposit date:2022-07-08
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Molecular determinants for differential activation of the bile acid receptor from the pathogen Vibrio parahaemolyticus.
J.Biol.Chem., 299, 2023
8DT8
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BU of 8dt8 by Molmil
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, LM18 nanobody, Nb136 nanobody, ...
Authors:Ozorowski, G, Turner, H.L, Ward, A.B.
Deposit date:2022-07-25
Release date:2023-06-14
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Fully synthetic platform to rapidly generate tetravalent bispecific nanobody-based immunoglobulins.
Proc.Natl.Acad.Sci.USA, 120, 2023
6M7I
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BU of 6m7i by Molmil
Crystal structure of KPC-2 with compound 3
Descriptor: 1-(2,4-dichlorophenyl)-4-(1H-tetrazol-5-yl)-1H-pyrazol-5-amine, Carbapenem-hydrolyzing beta-lactamase KPC, GLYCEROL
Authors:Akhtar, A, Chen, Y.
Deposit date:2018-08-20
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Active-Site Druggability of Carbapenemases and Broad-Spectrum Inhibitor Discovery.
Acs Infect Dis., 5, 2019
6M7W
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BU of 6m7w by Molmil
Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins
Descriptor: Phosphorelay intermediate protein YPD1
Authors:Menon, S.K, Soni, K.S, West, A.H.
Deposit date:2018-08-21
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins.
BMC Biochem., 20, 2019

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数据于2024-07-31公开中

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