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PDB: 89346 results

6SAI
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BU of 6sai by Molmil
NMR solution structure of Hml-2 C-terminal dimer domain
Descriptor: Gag protein
Authors:Nicastro, G, Taylor, I.A, Ball, N.J, Ramos, A.
Deposit date:2019-07-16
Release date:2020-01-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for Fullerene geometry in a human endogenous retrovirus capsid.
Nat Commun, 10, 2019
5G11
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BU of 5g11 by Molmil
Pseudomonas aeruginosa HDAH bound to PFSAHA.
Descriptor: 2,2,3,3,4,4,5,5,6,6,7,7-dodecakis(fluoranyl)-~{N}-oxidanyl-~{N}'-phenyl-octanediamide, HDAH, POTASSIUM ION, ...
Authors:Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
Deposit date:2016-03-23
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
Biochemistry, 55, 2016
5J4W
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BU of 5j4w by Molmil
DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTGG) in sodium
Descriptor: DNA (5'-D(*GP*GP*TP*TP*TP*GP*GP*TP*TP*TP*TP*GP*GP*TP*TP*GP*G)-3')
Authors:Dvorkin, S.A, Webba da Silva, M.
Deposit date:2016-04-01
Release date:2017-04-12
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
3LIT
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BU of 3lit by Molmil
The crystal structure of htlv protease complexed with the inhibitor KNI-10681
Descriptor: (4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-5,5-dimethyl-N-[(2R)-3-methylbutan-2-yl]-1,3-thiazolidine-4-carboxamide, Protease
Authors:Satoh, T, Li, M, Nguyen, J, Kiso, Y, Wlodawer, A, Gustchina, A.
Deposit date:2010-01-25
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.
J.Mol.Biol., 401, 2010
4XT0
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BU of 4xt0 by Molmil
Crystal Structure of Beta-etherase LigF from Sphingobium sp. strain SYK-6
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLUTATHIONE, PENTAETHYLENE GLYCOL, ...
Authors:Helmich, K.E, Bingman, C.A, Donohue, T.J, Phillips Jr, G.N.
Deposit date:2015-01-22
Release date:2016-02-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of beta-Aryl Ether Bonds in Lignin.
J.Biol.Chem., 291, 2016
4XTK
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BU of 4xtk by Molmil
Structure of TM1797, a CAS1 protein from Thermotoga maritima
Descriptor: CRISPR-associated endonuclease Cas1
Authors:Petit, P, Beloglazova, N, Skarina, T, Chang, C, Edwards, A, Joachimiak, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-01-23
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and nuclease activity of tm1797, a cas1 protein from thermotoga maritima
To Be Published
5JPH
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BU of 5jph by Molmil
Structure of a GNAT acetyltransferase SACOL1063 from Staphylococcus aureus in complex with CoA
Descriptor: Acetyltransferase SACOL1063, CHLORIDE ION, COENZYME A
Authors:Majorek, K.A, Osinski, T, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-05-03
Release date:2016-06-29
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Insight into the 3D structure and substrate specificity of previously uncharacterized GNAT superfamily acetyltransferases from pathogenic bacteria.
Biochim.Biophys.Acta, 1865, 2016
5MFX
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BU of 5mfx by Molmil
Zika NS3 helicase:RNA complex
Descriptor: ACETATE ION, CITRATE ANION, Genome polyprotein, ...
Authors:Jenkins, H.T, Ge, M, Chechik, M, Greive, S.J, Antson, A.A.
Deposit date:2016-11-18
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:How Zika virus NS3 helicase grips the first nucleotide of the leading RNA strand
To Be Published
6AS3
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BU of 6as3 by Molmil
Structure of a phage anti-CRISPR protein
Descriptor: NHis AcrE1 protein
Authors:Shah, M, Calmettes, C, Pawluk, A, Mejdani, M, Davidson, A.R, Maxwell, K.L, Moraes, T.F.
Deposit date:2017-08-23
Release date:2018-08-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Disabling a Type I-E CRISPR-Cas Nuclease with a Bacteriophage-Encoded Anti-CRISPR Protein.
MBio, 8, 2017
7K0A
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BU of 7k0a by Molmil
Puromycin N-acetyltransferase in complex with acetylated puromycin and CoA
Descriptor: 1,2-ETHANEDIOL, COENZYME A, DI(HYDROXYETHYL)ETHER, ...
Authors:Peat, T.S, Caputo, A.T, Newman, J, Adams, T.E.
Deposit date:2020-09-03
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-guided selection of puromycin N-acetyltransferase mutants with enhanced selection stringency for deriving mammalian cell lines expressing recombinant proteins.
Sci Rep, 11, 2021
1B37
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BU of 1b37 by Molmil
A 30 ANGSTROM U-SHAPED CATALYTIC TUNNEL IN THE CRYSTAL STRUCTURE OF POLYAMINE OXIDASE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, PROTEIN (POLYAMINE OXIDASE), ...
Authors:Binda, C, Coda, A, Angelini, R, Federico, R, Ascenzi, P, Mattevi, A.
Deposit date:1998-12-17
Release date:1999-12-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A 30-angstrom-long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase.
Structure Fold.Des., 7, 1999
8SAM
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BU of 8sam by Molmil
Crystal structure of class III lanthipeptide synthetase LP-GS-ThurKC in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Class III lanthipeptide, ...
Authors:Hernandez Garcia, A, Nair, S.K.
Deposit date:2023-04-01
Release date:2023-10-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure and Function of a Class III Metal-Independent Lanthipeptide Synthetase.
Acs Cent.Sci., 9, 2023
6ASC
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BU of 6asc by Molmil
Mre11 dimer in complex with Endonuclease inhibitor PFM04
Descriptor: (5E)-3-butyl-5-[(4-hydroxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one, 1,2-ETHANEDIOL, MANGANESE (II) ION, ...
Authors:Moiani, D, Arvai, A.S, Tainer, J.A.
Deposit date:2017-08-24
Release date:2018-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Targeting Allostery with Avatars to Design Inhibitors Assessed by Cell Activity: Dissecting MRE11 Endo- and Exonuclease Activities.
Meth. Enzymol., 601, 2018
6AQN
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BU of 6aqn by Molmil
Crystal structure of PPK2 in complex with phosphonic acid inhibitor
Descriptor: GLYCEROL, Polyphosphate:AMP phosphotransferase, S,R MESO-TARTARIC ACID, ...
Authors:Nocek, B, Berlicki, l, Joachimiak, A, Yakunin, S.
Deposit date:2017-08-20
Release date:2019-01-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Structural Insights into Substrate Selectivity and Activity of Bacterial Polyphosphate Kinases
Acs Catalysis, 8, 2018
6MEA
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BU of 6mea by Molmil
Crystal structure of a Tylonycteris bat coronavirus HKU4 macrodomain in complex with adenosine diphosphate ribose (ADP-ribose)
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Replicase polyprotein 1ab
Authors:Hammond, R.G, Schormann, N, McPherson, R.L, Leung, A.K.L, Deivanayagam, C.C.S, Johnson, M.A.
Deposit date:2018-09-06
Release date:2019-09-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:ADP-Ribose and Analogues bound to the DeMARylating Macrodomain from the Bat Coronavirus HKU4
Proc.Natl.Acad.Sci.USA, 2021
3LXG
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BU of 3lxg by Molmil
Crystal structure of rat phosphodiesterase 10A in complex with ligand WEB-3
Descriptor: 2-methoxy-6,7-dimethyl-9-propylimidazo[1,5-a]pyrido[3,2-e]pyrazine, MAGNESIUM ION, ZINC ION, ...
Authors:Mosbacher, T, Jestel, A, Steinbacher, S.
Deposit date:2010-02-25
Release date:2010-05-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of imidazo[1,5-a]pyrido[3,2-e]pyrazines as a new class of phosphodiesterase 10A inhibitiors.
J.Med.Chem., 53, 2010
6SEC
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BU of 6sec by Molmil
Cold-adapted beta-D-galactosidase from Arthrobacter sp. 32cBon complex with ONPG
Descriptor: 2-nitrophenyl beta-D-galactopyranoside, ACETATE ION, Beta-galactosidase, ...
Authors:Rutkiewicz, M, Bujacz, A, Bujacz, G.
Deposit date:2019-07-29
Release date:2019-09-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.768 Å)
Cite:Active Site Architecture and Reaction Mechanism Determination of Cold Adapted beta-d-galactosidase fromArthrobactersp. 32cB.
Int J Mol Sci, 20, 2019
7M9K
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BU of 7m9k by Molmil
HIV-1 Protease WT (NL4-3) in Complex with LR3-48
Descriptor: Protease, SULFATE ION, diethyl [(4-{(2S,3R)-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-4-[{4-[(1R)-1-hydroxyethyl]benzene-1-sulfonyl}(2-methylpropyl)amino]butyl}phenoxy)methyl]phosphonate
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-04-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.838 Å)
Cite:HIV-1 Protease in Complex with ligands
To Be Published
7QZ9
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BU of 7qz9 by Molmil
Transcriptional regulator LmrR with Trp-67 and Trp-96 replaced by the unnatural amino acid 5,6-difluoroTrp
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H.
Deposit date:2022-01-30
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
6P9G
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BU of 6p9g by Molmil
Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with 2-(4-oxoquinazolin-3(4H)-yl)propanoic acid
Descriptor: (2R)-2-(4-oxoquinazolin-3(4H)-yl)propanoic acid, UNKNOWN ATOM OR ION, Ubiquitin carboxyl-terminal hydrolase 5, ...
Authors:Tempel, W, Mann, M.K, Harding, R.J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Schapira, M, Structural Genomics Consortium (SGC)
Deposit date:2019-06-10
Release date:2019-09-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of Small Molecule Antagonists of the USP5 Zinc Finger Ubiquitin-Binding Domain.
J.Med.Chem., 62, 2019
8SAP
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BU of 8sap by Molmil
Crystal structure of class III lanthipeptide synthetase ThurKC
Descriptor: Class III lanthionine synthetase LanKC
Authors:Hernandez Garcia, A, Nair, S.K.
Deposit date:2023-04-01
Release date:2023-10-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structure and Function of a Class III Metal-Independent Lanthipeptide Synthetase.
Acs Cent.Sci., 9, 2023
3LZ3
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BU of 3lz3 by Molmil
Human aldose reductase mutant T113S complexed with IDD388
Descriptor: (2-{[(4-BROMO-2-FLUOROBENZYL)AMINO]CARBONYL}-5-CHLOROPHENOXY)ACETIC ACID, Aldose reductase, BROMIDE ION, ...
Authors:Koch, C, Heine, A, Klebe, G.
Deposit date:2010-03-01
Release date:2010-12-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Tracing the detail: how mutations affect binding modes and thermodynamic signatures of closely related aldose reductase inhibitors
J.Mol.Biol., 406, 2011
6EM0
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BU of 6em0 by Molmil
Crystal Structure of 2-hydroxybiphenyl 3-monooxygenase M321A from Pseudomonas azelaica
Descriptor: 2-hydroxybiphenyl-3-monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Deri, B, Bregman-Cohen, A, Pazy Benhar, Y, Fishman, A.
Deposit date:2017-10-01
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Altering 2-Hydroxybiphenyl 3-Monooxygenase Regioselectivity by Protein Engineering for the Production of a New Antioxidant.
Chembiochem, 19, 2018
6SA7
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BU of 6sa7 by Molmil
DARPin-Armadillo fusion C8long83
Descriptor: DARPin-Armadillo fusion C8long83
Authors:Ernst, P, Honegger, A, van der Valk, F, Ewald, C, Mittl, P.R.E, Plucktun, A.
Deposit date:2019-07-16
Release date:2019-11-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Rigid fusions of designed helical repeat binding proteins efficiently protect a binding surface from crystal contacts.
Sci Rep, 9, 2019
5UF3
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BU of 5uf3 by Molmil
Structure Effects of the Four-Adenine Loop of the Coliphage GA Replicase RNA Operator
Descriptor: phage GA operator RNA hairpin
Authors:Chang, A.T, Tran, M, DeJong, E, Nikonowicz, E.P.
Deposit date:2017-01-03
Release date:2017-05-31
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and Dynamics of the Tetra-A Loop and (A-A)-U Sequence Motif within the Coliphage GA Replicase RNA Operator.
Biochemistry, 56, 2017

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