Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 件

4QX1
DownloadVisualize
BU of 4qx1 by Molmil
Cry3A Toxin structure obtained by Serial Femtosecond Crystallography from in vivo grown crystals isolated from Bacillus thuringiensis and data processed with the CrystFEL software suite
分子名称: Pesticidal crystal protein cry3Aa
著者Sawaya, M.R, Cascio, D, Gingery, M, Rodriguez, J, Goldschmidt, L, Colletier, J.-P, Messerschmidt, M, Boutet, S, Koglin, J.E, Williams, G.J, Brewster, A.S, Nass, K, Hattne, J, Botha, S, Doak, R.B, Shoeman, R.L, DePonte, D.P, Park, H.-W, Federici, B.A, Sauter, N.K, Schlichting, I, Eisenberg, D.
登録日2014-07-17
公開日2014-08-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Protein crystal structure obtained at 2.9 angstrom resolution from injecting bacterial cells into an X-ray free-electron laser beam.
Proc.Natl.Acad.Sci.USA, 111, 2014
7RCF
DownloadVisualize
BU of 7rcf by Molmil
Fourth stage reengineered variant of I-OnuI with stability enhancing substitutions
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L.
登録日2021-07-07
公開日2022-06-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.233 Å)
主引用文献Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
6RMU
DownloadVisualize
BU of 6rmu by Molmil
Crystal structure of disulphide-linked human C3d dimer in complex with Staphylococcus aureus complement subversion protein Sbi-IV
分子名称: 1,2-ETHANEDIOL, Complement C3, DI(HYDROXYETHYL)ETHER, ...
著者Wahid, A.A, van den Elsen, J.M.H, Crennell, S.J.
登録日2019-05-07
公開日2020-11-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Staphylococcal Complement Evasion Protein Sbi Stabilises C3d Dimers by Inducing an N-Terminal Helix Swap
Front Immunol, 13, 2022
6I5O
DownloadVisualize
BU of 6i5o by Molmil
Crystal structure of SPBc2 prophage-derived protein YomS
分子名称: SPBc2 prophage-derived uncharacterized protein YomS
著者Hakansson, M, Svensson, L.A, Welin, M, Al-Karadaghi, S.
登録日2018-11-14
公開日2019-11-20
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Crystal structures of the Bacillus subtilis prophage lytic cassette proteins XepA and YomS.
Acta Crystallogr D Struct Biol, 75, 2019
5KBP
DownloadVisualize
BU of 5kbp by Molmil
The crystal structure of an alpha-mannosidase from Enterococcus faecalis V583
分子名称: Glycosyl hydrolase, family 38, SULFATE ION
著者Tan, K, Chhor, G, Jedrzejczak, R, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2016-06-03
公開日2016-07-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The crystal structure of an alpha-mannosidase from Enterococcus faecalis V583
To Be Published
6LAU
DownloadVisualize
BU of 6lau by Molmil
the wildtype SAM-VI riboswitch bound to SAH
分子名称: CESIUM ION, GUANOSINE-5'-TRIPHOSPHATE, RNA (54-MER), ...
著者Ren, A, Sun, A.
登録日2019-11-13
公開日2020-01-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.109 Å)
主引用文献SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
8UOO
DownloadVisualize
BU of 8uoo by Molmil
Structure of atypical asparaginase from Rhodospirillum rubrum
分子名称: Asparaginase, CHLORIDE ION, GLYCEROL
著者Lubkowski, J, Wlodawer, A, Zhang, D.
登録日2023-10-20
公開日2024-04-03
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
6EFR
DownloadVisualize
BU of 6efr by Molmil
Crystal Structure of iNicSnFR 1.0
分子名称: iNicSnFR 1.0, a genetically encoded nicotine biosensor,Green fluorescent protein
著者Shivange, A.V, Borden, P.M.
登録日2018-08-17
公開日2019-01-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Nicotinic Drugs in the Endoplasmic Reticulum: Beginning the Inside-out Pathway of Addiction and Therapy
J.Gen.Physiol., 2019
7K0A
DownloadVisualize
BU of 7k0a by Molmil
Puromycin N-acetyltransferase in complex with acetylated puromycin and CoA
分子名称: 1,2-ETHANEDIOL, COENZYME A, DI(HYDROXYETHYL)ETHER, ...
著者Peat, T.S, Caputo, A.T, Newman, J, Adams, T.E.
登録日2020-09-03
公開日2021-03-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-guided selection of puromycin N-acetyltransferase mutants with enhanced selection stringency for deriving mammalian cell lines expressing recombinant proteins.
Sci Rep, 11, 2021
8E40
DownloadVisualize
BU of 8e40 by Molmil
Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA
分子名称: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, RNA, ...
著者Ito, F, Alvarez-Cabrera, A.L, Liu, S, Yang, H, Shiriaeva, A, Zhou, Z.H, Chen, X.S.
登録日2022-08-17
公開日2023-01-11
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.
Sci Adv, 9, 2023
7RCD
DownloadVisualize
BU of 7rcd by Molmil
Second stage reengineered variant of I-OnuI targeting human PD1 gene with activity enhancing substitutions
分子名称: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-c
著者Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L.
登録日2021-07-07
公開日2022-06-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.448 Å)
主引用文献Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
8UP7
DownloadVisualize
BU of 8up7 by Molmil
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19A)
分子名称: Asparaginase, CHLORIDE ION
著者Lubkowski, J, Wlodawer, A, Zhang, D.
登録日2023-10-21
公開日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
5KDE
DownloadVisualize
BU of 5kde by Molmil
Inorganic pyrophosphatase from Mycobacterium tuberculosis in complex with inhibitor 1 and inorganic pyrophosphate
分子名称: 2,4-bis(aziridin-1-yl)-6-(1-phenylpyrrol-2-yl)-1,3,5-triazine, Inorganic pyrophosphatase, PYROPHOSPHATE 2-
著者Pang, A.H, Garzan, A, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日2016-06-08
公開日2016-09-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Discovery of Allosteric and Selective Inhibitors of Inorganic Pyrophosphatase from Mycobacterium tuberculosis.
ACS Chem. Biol., 11, 2016
7UBF
DownloadVisualize
BU of 7ubf by Molmil
Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)
分子名称: Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
著者Ramelot, T.A, Tejero, R, Montelione, G.T.
登録日2022-03-14
公開日2022-09-14
最終更新日2022-09-28
実験手法SOLUTION NMR
主引用文献Accurate de novo design of membrane-traversing macrocycles.
Cell, 185, 2022
8UP9
DownloadVisualize
BU of 8up9 by Molmil
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19Q)
分子名称: 1,2-ETHANEDIOL, Asparaginase, CHLORIDE ION, ...
著者Lubkowski, J, Wlodawer, A, Zhang, D.
登録日2023-10-21
公開日2024-04-03
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
6UV4
DownloadVisualize
BU of 6uv4 by Molmil
Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18a-oligo1
分子名称: 18a_oligo1, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Ngo, T.D, Partin, A.C, Nam, Y.
登録日2019-11-01
公開日2020-01-01
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献RNA Specificity and Autoregulation of DDX17, a Modulator of MicroRNA Biogenesis.
Cell Rep, 29, 2019
4RBS
DownloadVisualize
BU of 4rbs by Molmil
Crystal Structure of New Delhi Metallo-beta-Lactamase-1 in the Complex with Hydrolyzed Meropenem
分子名称: (2S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3-methyl-2H-pyrro le-5-carboxylic acid, ACETIC ACID, Beta-lactamase NDM-1, ...
著者Kim, Y, Tesar, C, Jedrzejczak, R, Babnigg, G, Sacchettini, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)
登録日2014-09-12
公開日2014-11-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.405 Å)
主引用文献Crystal Structure of New Delhi Metallo-beta-Lactamase-1 in the Complex with Hydrolyzed Meropenem
To be Published
8AAQ
DownloadVisualize
BU of 8aaq by Molmil
Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP), CRT-416 form
分子名称: Carotenoid-binding protein
著者Varfolomeeva, L.A, Slonimskiy, Y.B, Egorkin, N.A, Minyaev, M.E, Faletrov, Y.V, Boyko, K.M, Sluchanko, N.N.
登録日2022-07-01
公開日2023-02-01
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Preparation and Structural Studies of the Silkworm Carotenoid-Binding Protein Complexed with a New Pigment
Crystallography Reports, 2022
7RCE
DownloadVisualize
BU of 7rce by Molmil
Third stage reengineered variant of I-OnuI with specificity enhancing substitutions
分子名称: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-d, ...
著者Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L.
登録日2021-07-07
公開日2022-06-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
5KDL
DownloadVisualize
BU of 5kdl by Molmil
Crystal structure of the 4 alanine insertion variant of the Gi alpha1 subunit bound to GTPgammaS
分子名称: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, Guanine nucleotide-binding protein G(i) subunit alpha-1, MAGNESIUM ION
著者Kaya, A.I, Lokits, A.D, Gilbert, J, Iverson, T.M, Meiler, J, Hamm, H.E.
登録日2016-06-08
公開日2016-08-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.665 Å)
主引用文献A Conserved Hydrophobic Core in G alpha i1 Regulates G Protein Activation and Release from Activated Receptor.
J.Biol.Chem., 291, 2016
6EGL
DownloadVisualize
BU of 6egl by Molmil
Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing a D-Leu in the Second Coordination Sphere of a Non-metalated Tris-thiolate Binding Site
分子名称: Apo-(GRAND CoilSerL12(DLE)L16C)3, POLYETHYLENE GLYCOL (N=34), ZINC ION
著者Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
登録日2018-08-20
公開日2019-04-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation.
Chemistry, 25, 2019
6USF
DownloadVisualize
BU of 6usf by Molmil
CryoEM structure of human alpha4beta2 nicotinic acetylcholine receptor with varenicline in complex with anti-BRIL synthetic antibody BAK5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab heavy chain, ...
著者Alvarez, F.J.D, Mukherjee, S, Han, S, Ammirati, M, Kossiakoff, A.A.
登録日2019-10-26
公開日2020-04-29
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.87 Å)
主引用文献Synthetic antibodies against BRIL as universal fiducial marks for single-particle cryoEM structure determination of membrane proteins.
Nat Commun, 11, 2020
5KDX
DownloadVisualize
BU of 5kdx by Molmil
IMPa metallopeptidase in complex with T-antigen
分子名称: 1,2-ETHANEDIOL, Metallopeptidase, PHOSPHATE ION, ...
著者Noach, I, Boraston, A.B.
登録日2016-06-08
公開日2017-01-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6V1R
DownloadVisualize
BU of 6v1r by Molmil
Crystal structure of iAChSnFR Fluorescent Acetylcholine Sensor precursor binding protein
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ACETYLCHOLINE, DI(HYDROXYETHYL)ETHER, ...
著者Fan, C, Borden, P.M, Looger, L.L, Lester, H.A, Rees, D.C.
登録日2019-11-21
公開日2020-11-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献A genetically encoded fluorescent sensor for in vivo acetylcholine detection
To Be Published
5KGH
DownloadVisualize
BU of 5kgh by Molmil
X-ray structure of a glucosamine N-Acetyltransferase from Clostridium acetobutylicum, mutant Y297F
分子名称: 1,2-ETHANEDIOL, ACETYL COENZYME *A, CHLORIDE ION, ...
著者Dopkins, B.J, Thoden, J.B, Tipton, P.A, Holden, H.M.
登録日2016-06-13
公開日2016-07-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase.
Biochemistry, 55, 2016

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon