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PDB: 89035 件

8QBM
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Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)
分子名称: MAGNESIUM ION, Retron Ec86 putative ribosyltransferase/DNA-binding protein, Retron Ec86 reverse transcriptase, ...
著者Carabias del Rey, A, Montoya, G.
登録日2023-08-24
公開日2024-06-05
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Retron-Eco1 assembles NAD + -hydrolyzing filaments that provide immunity against bacteriophages.
Mol.Cell, 84, 2024
6QVH
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Streptomyces lividans Ccsp mutant - H113A
分子名称: COPPER (I) ION, cytosolic copper storage protein
著者Straw, M.L, Hough, M.A.
登録日2019-03-01
公開日2019-07-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献A Histidine Residue and a Tetranuclear Cuprous-thiolate Cluster Dominate the Copper Loading Landscape of a Copper Storage Protein from Streptomyces lividans.
Chemistry, 25, 2019
8QBL
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BU of 8qbl by Molmil
Retron-Eco1 filament with inactive effector (E106A, 2 segments)
分子名称: MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Retron Ec86 putative ribosyltransferase/DNA-binding protein, ...
著者Carabias del Rey, A, Montoya, G.
登録日2023-08-24
公開日2024-06-05
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.66 Å)
主引用文献Retron-Eco1 assembles NAD + -hydrolyzing filaments that provide immunity against bacteriophages.
Mol.Cell, 84, 2024
6WLT
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Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution
分子名称: RNA (231-MER)
著者Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
登録日2020-04-20
公開日2020-07-08
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6ZLU
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Closed-closed state of the Bt1762-Bt1763 levan transport system
分子名称: SusC homolog, SusD homolog
著者White, J.B.R, van den Berg, B, Ranson, N.A.
登録日2020-07-01
公開日2020-11-11
最終更新日2021-01-20
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
7TDB
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BU of 7tdb by Molmil
Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions
分子名称: MAGNESIUM ION, MANGANESE (II) ION, [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid, ...
著者Nuthanakanti, A, Serganov, A.
登録日2021-12-30
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery.
Acs Chem.Biol., 17, 2022
7TD7
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BU of 7td7 by Molmil
Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions
分子名称: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Nuthanakanti, A, Serganov, A.
登録日2021-12-30
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery.
Acs Chem.Biol., 17, 2022
7TDC
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Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions
分子名称: CALCIUM ION, MAGNESIUM ION, [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid, ...
著者Nuthanakanti, A, Serganov, A.
登録日2021-12-30
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery.
Acs Chem.Biol., 17, 2022
7TDA
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BU of 7tda by Molmil
Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions
分子名称: MAGNESIUM ION, MANGANESE (II) ION, THIAMINE DIPHOSPHATE, ...
著者Nuthanakanti, A, Serganov, A.
登録日2021-12-30
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery.
Acs Chem.Biol., 17, 2022
6ZTQ
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BU of 6ztq by Molmil
Cryo-EM structure of respiratory complex I from Mus musculus inhibited by piericidin A at 3.0 A
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Bridges, H.R, Blaza, J.N, Agip, A.N.A, Hirst, J.
登録日2020-07-20
公開日2020-10-21
最終更新日2020-10-28
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of inhibitor-bound mammalian complex I.
Nat Commun, 11, 2020
6ZSC
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BU of 6zsc by Molmil
Human mitochondrial ribosome in complex with E-site tRNA
分子名称: 12S mitochondrial rRNA, 16S mitochondrial rRNA, 28S ribosomal protein S10, ...
著者Aibara, S, Singh, V, Modelska, A, Amunts, A.
登録日2020-07-15
公開日2020-09-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural basis of mitochondrial translation.
Elife, 9, 2020
6ZM1
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BU of 6zm1 by Molmil
Open-closed state of the Bt1762-Bt1763 levan transport system
分子名称: SusC homolog, SusD homolog
著者White, J.B.R, van den Berg, B, Ranson, N.A.
登録日2020-07-01
公開日2020-11-11
最終更新日2021-01-20
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZTP
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BU of 6ztp by Molmil
E. coli 70S-RNAP expressome complex in uncoupled state 6
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Webster, M.W, Takacs, M, Weixlbaumer, A.
登録日2020-07-20
公開日2020-09-16
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis of transcription-translation coupling and collision in bacteria.
Science, 369, 2020
7AAZ
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BU of 7aaz by Molmil
Crystal structure of MerTK in complex with a type 1.5 aminopyridine inhibitor
分子名称: 1,2-ETHANEDIOL, 2-azanyl-~{N}-[(1~{S},2~{S})-2-[[4-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]methoxy]cyclopentyl]-5-(1-methylpyrazol-4-yl)pyridine-3-carboxamide, CHLORIDE ION, ...
著者Pflug, A, Schimpl, M, McCoull, W, Nissink, J.W.M, Overman, R.C, Rawlins, P.B, Truman, C, Underwood, E, Warwicker, J, Winter-Holt, J.
登録日2020-09-05
公開日2020-11-04
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.855 Å)
主引用文献A-loop interactions in Mer tyrosine kinase give rise to inhibitors with two-step mechanism and long residence time of binding.
Biochem.J., 477, 2020
6MKN
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BU of 6mkn by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, DeMirci, H, Agris, P.F.
登録日2018-09-25
公開日2019-04-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.46 Å)
主引用文献A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.
J.Mol.Biol., 432, 2020
7BOI
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BU of 7boi by Molmil
Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)
分子名称: 16S rRNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
著者Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S.
登録日2021-01-25
公開日2021-07-07
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.
Sci Adv, 7, 2021
7BOF
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BU of 7bof by Molmil
Bacterial 30S ribosomal subunit assembly complex state I (body domain)
分子名称: 16S rRNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
著者Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S.
登録日2021-01-25
公開日2021-07-07
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.92 Å)
主引用文献A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.
Sci Adv, 7, 2021
6ZQS
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BU of 6zqs by Molmil
Crystal structure of double-phosphorylated p38alpha with ATF2(83-102)
分子名称: 2-[(2,4-difluorophenyl)amino]-7-{[(2R)-2,3-dihydroxypropyl]oxy}-10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-one, Cyclic AMP-dependent transcription factor ATF-2, Mitogen-activated protein kinase 14
著者Kirsch, K, Sok, P, Poti, A.L, Remenyi, A.
登録日2020-07-10
公開日2020-11-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Co-regulation of the transcription controlling ATF2 phosphoswitch by JNK and p38.
Nat Commun, 11, 2020
6ZRC
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BU of 6zrc by Molmil
Structure of the human RBAP48 in complex with a macrocyclic peptide cyclized via a xylene linker attached to two cysteines
分子名称: Histone-binding protein RBBP4, PARA-XYLENE, macrocyclic peptide based on residues 659-672 of the metastasis-associated protein MTA1
著者Vetter, I.R, Porfetye, A.T.
登録日2020-07-13
公開日2020-10-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure Based Design of Bicyclic Peptide Inhibitors of RbAp48.
Angew.Chem.Int.Ed.Engl., 60, 2021
6ZSD
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BU of 6zsd by Molmil
Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA
分子名称: 12S mitochondrial rRNA, 16S mitochondrial rRNA, 28S ribosomal protein S10, ...
著者Aibara, S, Singh, V, Modelska, A, Amunts, A.
登録日2020-07-15
公開日2020-09-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of mitochondrial translation.
Elife, 9, 2020
7UZ0
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BU of 7uz0 by Molmil
AntiT-tRNA flip UCCA
分子名称: AntiT-tRNA flip UCCA, MAGNESIUM ION, STRONTIUM ION
著者Price, I.R, Grigg, J.C, Ke, A.
登録日2022-05-07
公開日2022-06-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch
Crystals, 12, 2022
6WLU
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BU of 6wlu by Molmil
V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution
分子名称: RNA (231-MER)
著者Kappel, K, Zhang, K, Su, Z, Watkins, A.M, Kladwang, W, Li, S, Pintilie, G, Topkar, V.V, Rangan, R, Zheludev, I.N, Yesselman, J.D, Chiu, W, Das, R.
登録日2020-04-20
公開日2020-07-08
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (5.7 Å)
主引用文献Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
Nat.Methods, 17, 2020
6R01
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BU of 6r01 by Molmil
Streptomyces lividans Ccsp mutant - H107A/H111A
分子名称: COPPER (I) ION, Cytosolic copper storage protein
著者Straw, M.L, Hough, M.A, Worrall, J.A.
登録日2019-03-12
公開日2019-07-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献A Histidine Residue and a Tetranuclear Cuprous-thiolate Cluster Dominate the Copper Loading Landscape of a Copper Storage Protein from Streptomyces lividans.
Chemistry, 25, 2019
6N8O
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BU of 6n8o by Molmil
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
分子名称: 5.8S rRNA, 5S rRNA, 60S ribosomal export protein NMD3, ...
著者Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W.
登録日2018-11-29
公開日2019-03-13
最終更新日2020-01-08
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome.
Nat Commun, 10, 2019
6QYB
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BU of 6qyb by Molmil
Streptomyces lividans Ccsp mutant - H111A
分子名称: COPPER (I) ION, cytosolic copper storage protein
著者Straw, M.L, Hough, M.A.
登録日2019-03-08
公開日2019-07-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献A Histidine Residue and a Tetranuclear Cuprous-thiolate Cluster Dominate the Copper Loading Landscape of a Copper Storage Protein from Streptomyces lividans.
Chemistry, 25, 2019

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件を2024-09-04に公開中

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