Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89472 件

8FI0
DownloadVisualize
BU of 8fi0 by Molmil
Structure of Lettuce aptamer bound to DFAME
分子名称: Lettuce DNA aptamer, MAGNESIUM ION, POTASSIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023
6AQB
DownloadVisualize
BU of 6aqb by Molmil
Structure of the SH3 domain of MLK3 bound to peptide generated from phage display
分子名称: 1,2-ETHANEDIOL, Chimera protein of MLK3-SH3 and MIP (E.C.2.7.11.25), PHOSPHATE ION
著者Kall, S.K, Lavie, A.
登録日2017-08-19
公開日2018-07-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Identification of two distinct peptide-binding pockets in the SH3 domain of human mixed-lineage kinase 3.
J. Biol. Chem., 293, 2018
4XRS
DownloadVisualize
BU of 4xrs by Molmil
Heterodimeric complex of transcription factors MEIS1 and DLX3 on specific DNA
分子名称: DNA (5'-D(P*AP*CP*AP*AP*TP*TP*AP*TP*CP*CP*TP*GP*TP*CP*AP*AP*C)-3'), DNA (5'-D(P*CP*AP*AP*TP*TP*AP*TP*CP*CP*TP*GP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*GP*AP*TP*AP*AP*TP*TP*GP*TP*T)-3'), ...
著者Jorma, A, Yin, Y, Nitta, K.R, Dave, K, Enge, M, Kivioja, T, Popov, A, Morgunova, E, Taipale, J.
登録日2015-01-21
公開日2015-11-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献DNA-dependent formation of transcription factor pairs alters their binding specificity.
Nature, 527, 2015
3W0U
DownloadVisualize
BU of 3w0u by Molmil
human Glyoxalase I with an N-hydroxypyridone inhibitor
分子名称: Lactoylglutathione lyase, N-[3-(1-Hydroxy-6-oxo-4-phenyl-1,6-dihydro-pyridin-2-yl)-5-methanesulfonylamino-phenyl]-methanesulfonamide, ZINC ION
著者Fukami, T.A, Irie, M, Matsuura, T.
登録日2012-11-02
公開日2013-11-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献N-Hydroxypyridone-based glyoxalase I inhibitors mimicking binding interactions of the substrate
to be published
4XS0
DownloadVisualize
BU of 4xs0 by Molmil
Human methemoglobin in complex with the second and third NEAT domains of IsdH(F365Y/A369F/Y642A) from Staphylococcus aureus
分子名称: CHLORIDE ION, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Dickson, C.F, Jacques, D.A, Guss, J.M, Gell, D.A.
登録日2015-01-21
公開日2015-06-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献The structure of haemoglobin bound to the haemoglobin receptor IsdH from Staphylococcus aureus shows disruption of the native alpha-globin haem pocket.
Acta Crystallogr.,Sect.D, 71, 2015
5TEH
DownloadVisualize
BU of 5teh by Molmil
c-Src V281C kinase domain in complex with Rao-IV-156
分子名称: (2S)-3-[4-amino-7-(2-methoxyethyl)-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl]-2-cyano-N-(propan-2-yl)propanamide, Proto-oncogene tyrosine-protein kinase Src
著者Dieter, E.M, Merritt, E.A, Maly, D.J.
登録日2016-09-21
公開日2017-09-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献A combined approach reveals a regulatory mechanism coupling Src's kinase activity, localization, and phosphotransferase-independent functions
Mol.Cell, 2019
8FI7
DownloadVisualize
BU of 8fi7 by Molmil
Structure of Lettuce C20T bound to DFHO
分子名称: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023
6RWL
DownloadVisualize
BU of 6rwl by Molmil
SIVrcm intasome
分子名称: DNA (5'-D(*AP*AP*CP*TP*GP*GP*TP*AP*GP*AP*GP*AP*TP*TP*TP*TP*TP*CP*TP*TP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*TP*AP*AP*GP*AP*AP*AP*AP*AP*TP*CP*TP*CP*TP*AP*CP*CP*A)-3'), Pol protein, ...
著者Cherepanov, P, Nans, A, Cook, N.
登録日2019-06-05
公開日2020-02-05
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献Structural basis of second-generation HIV integrase inhibitor action and viral resistance.
Science, 367, 2020
8FHX
DownloadVisualize
BU of 8fhx by Molmil
Structure of Lettuce aptamer bound to DFHBI-1T
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023
3O55
DownloadVisualize
BU of 3o55 by Molmil
Crystal structure of human FAD-linked augmenter of liver regeneration (ALR)
分子名称: Augmenter of liver regeneration, FLAVIN-ADENINE DINUCLEOTIDE
著者Banci, L, Bertini, I, Calderone, V, Cefaro, C, Ciofi-Baffoni, S, Gallo, A, Kallergi, E, Lionaki, E, Pozidis, C, Tokatlidis, K.
登録日2010-07-28
公開日2011-04-13
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular recognition and substrate mimicry drive the electron-transfer process between MIA40 and ALR.
Proc.Natl.Acad.Sci.USA, 108, 2011
5WV1
DownloadVisualize
BU of 5wv1 by Molmil
Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with ribose sugar at 1.90 A resolution.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein, ...
著者Shokeen, A, Singh, P.K, Pandey, S, Kaur, P, Sharma, S, Singh, T.P.
登録日2016-12-21
公開日2017-01-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with ribose sugar at 1.90 A resolution.
To Be Published
5FM6
DownloadVisualize
BU of 5fm6 by Molmil
Double-heterohexameric rings of full-length Rvb1(ADP)Rvb2(apo)
分子名称: ADENOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, RVB1, ...
著者Silva-Martin, N, Dauden, M.I, Glatt, S, Hoffmann, N.A, Mueller, C.W.
登録日2015-11-02
公開日2016-01-20
実験手法X-RAY DIFFRACTION (2.997 Å)
主引用文献The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight Into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex.
Plos One, 11, 2016
4MZC
DownloadVisualize
BU of 4mzc by Molmil
Atomic Resolution Structure of PfGrx1
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, Glutaredoxin
著者Yogavel, M, Sharma, A.
登録日2013-09-30
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (0.949 Å)
主引用文献Atomic resolution crystal structure of glutaredoxin 1 from Plasmodium falciparum and comparison with other glutaredoxins.
Acta Crystallogr.,Sect.D, 70, 2014
6S24
DownloadVisualize
BU of 6s24 by Molmil
Crystal structure of the TgGalNAc-T3 in complex with UDP, manganese and the peptide 3
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO, ...
著者de las Rivas, M, Daniel, E.J.P, Narimatsu, Y, Companon, I, Kato, K, Hermosilla, P, Thureau, A, Ceballos-Laita, L, Coelho, H, Bernado, P, Marcelo, F, Hansen, L, Lostao, A, Corzana, F, Clausen, H, Gerken, T.A, Hurtado-Guerrero, R.
登録日2019-06-20
公開日2019-12-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3.
Nat.Chem.Biol., 16, 2020
5TIH
DownloadVisualize
BU of 5tih by Molmil
Structural basis for inhibition of erythrocyte invasion by antibodies to Plasmodium falciparum protein CyRPA
分子名称: ACETATE ION, CyRPA antibody Fab Heavy Chain, CyRPA antibody Fab Light Chain, ...
著者Chen, L, Xu, Y, Wang, W, Thompson, J.K, Goddard-Borger, E, Lawrence, M.C, Cowman, A.F.
登録日2016-10-03
公開日2017-03-01
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Structural basis for inhibition of erythrocyte invasion by antibodies toPlasmodium falciparumprotein CyRPA.
Elife, 6, 2017
6AVH
DownloadVisualize
BU of 6avh by Molmil
GH3.15 acyl acid amido synthetase
分子名称: ADENOSINE MONOPHOSPHATE, GH3.15 acyl acid amido synthetase
著者Sherp, A.M, Jez, J.M.
登録日2017-09-02
公開日2018-02-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.011 Å)
主引用文献Arabidopsis thalianaGH3.15 acyl acid amido synthetase has a highly specific substrate preference for the auxin precursor indole-3-butyric acid.
J. Biol. Chem., 293, 2018
6U8J
DownloadVisualize
BU of 6u8j by Molmil
Crystal structure of 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase/phospho-2-dehydro-3-deoxyheptonate aldolase (Aro3) from Candida auris
分子名称: Phospho-2-dehydro-3-deoxyheptonate aldolase, UNKNOWN ATOM OR ION
著者Michalska, K, Evdokimova, E, Semper, C, Di Leo, R, Stogios, P.J, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2019-09-05
公開日2019-09-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.492 Å)
主引用文献Crystal structure of 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase/phospho-2-dehydro-3-deoxyheptonate aldolase (Aro3) from Candida auris
To Be Published
6U9R
DownloadVisualize
BU of 6u9r by Molmil
MLL1 SET N3861I/Q3867L bound to inhibitor 12 (TC-5140)
分子名称: 5'-{[(3S)-3-amino-3-carboxypropyl]({1-[(3-chlorophenyl)methyl]azetidin-3-yl}methyl)amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase, ZINC ION
著者Petrunak, E.M, Stuckey, J.A.
登録日2019-09-09
公開日2020-07-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase.
Acs Med.Chem.Lett., 11, 2020
7C2S
DownloadVisualize
BU of 7c2s by Molmil
Helical reconstruction of Dengue virus serotype 3 complexed with Fab C10
分子名称: Heavy chain of Fab C10, envelope protein, light chain of Fab C10
著者Morrone, S, Chew, S.V, Lim, X.N, Ng, T.S, Kostyuchenko, V.A, Zhang, S, Lok, S.M.
登録日2020-05-09
公開日2020-07-08
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (10.4 Å)
主引用文献High flavivirus structural plasticity demonstrated by a non-spherical morphological variant.
Nat Commun, 11, 2020
6Z50
DownloadVisualize
BU of 6z50 by Molmil
Crystal structure of CLK1 in complex with macrocycle ODS2003208
分子名称: 1,2-ETHANEDIOL, 11,15-dimethyl-6-(oxan-4-yloxy)-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one, Dual specificity protein kinase CLK1, ...
著者Chaikuad, A, Benderitter, P, Hoflack, J, Denis, A, Knapp, S, Structural Genomics Consortium (SGC)
登録日2020-05-26
公開日2020-06-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of CLK1 in complex with macrocycle ODS2003208
To Be Published
4CCR
DownloadVisualize
BU of 4ccr by Molmil
Crystal structure of the thioredoxin reductase apoenzyme from Entamoeba histolytica in the absence of the NADP cofactor
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GOLD ION, THIOREDOXIN REDUCTASE
著者Parsonage, D, Kells, P.M, Hirata, K, Debnath, A, Poole, L.B, McKerrow, J.H, Reed, S.L, Podust, L.M.
登録日2013-10-25
公開日2014-11-05
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献X-Ray Structures of Thioredoxin and Thioredoxin Reductase from Entamoeba Histolytica and Prevailing Hypothesis of the Mechanism of Auranofin Action.
J.Struct.Biol., 194, 2016
7C5Z
DownloadVisualize
BU of 7c5z by Molmil
Crystal structure of spring viremia of carp virus phosphoprotein central domain
分子名称: Phosphoprotein
著者Wang, Z.X, Guan, H.X, Ouyang, S.Y, Zhang, Y.A.
登録日2020-05-21
公開日2020-08-05
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural and Functional Characterization of the Phosphoprotein Central Domain of Spring Viremia of Carp Virus.
J.Virol., 94, 2020
5Y25
DownloadVisualize
BU of 5y25 by Molmil
EGFR kinase domain mutant (T790M/L858R) with covalent ligand NS-062
分子名称: (2R)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]-1-(2-fluoranylethanoyl)pyrrolidine-2-carboxamide, Epidermal growth factor receptor
著者Shiroishi, M, Abe, Y, Caaveiro, J.M.M, Sakamoto, S, Morimoto, S, Fuchida, H, Shindo, N, Ojida, A.
登録日2017-07-24
公開日2018-07-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Selective and reversible modification of kinase cysteines with chlorofluoroacetamides.
Nat.Chem.Biol., 15, 2019
6RJF
DownloadVisualize
BU of 6rjf by Molmil
Echovirus 1 intact particle
分子名称: PALMITIC ACID, VP1, VP2, ...
著者Domanska, A, Ruokolainen, V.P, Pelliccia, M, Laajala, M.A, Marjomaki, V.S, Butcher, S.J.
登録日2019-04-26
公開日2019-06-12
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Extracellular Albumin and Endosomal Ions Prime Enterovirus Particles for Uncoating That Can Be Prevented by Fatty Acid Saturation.
J.Virol., 93, 2019
1L8H
DownloadVisualize
BU of 1l8h by Molmil
DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA PROTECTION DURING STARVATION PROTEIN, POTASSIUM ION
著者Luo, J, Liu, D, White, M.A, Fox, R.O.
登録日2002-03-20
公開日2003-06-24
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献DNA Protection and Binding by E. Coli Dps Protein
To be Published

226262

件を2024-10-16に公開中

PDB statisticsPDBj update infoContact PDBjnumon