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PDB: 89774 results

9CMJ
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Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (L50F, E166V)
Descriptor: 3C-like proteinase nsp5
Authors:Kovalevsky, A, Coates, L, Gerlits, O.
Deposit date:2024-07-15
Release date:2024-10-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Effects of SARS-CoV-2 Main Protease Mutations at Positions L50, E166, and L167 Rendering Resistance to Covalent and Noncovalent Inhibitors.
J.Med.Chem., 67, 2024
8EDQ
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BU of 8edq by Molmil
E. coli pyruvate kinase (PykF) I264F
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Pyruvate kinase, SULFATE ION
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-09-05
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8QHO
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BU of 8qho by Molmil
Human Carbonic Anhydrase II in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
Descriptor: 1,1-bis(oxidanyl)-3,4-dihydro-2,1$l^{4}-benzoxaborinine, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-09-08
Release date:2024-09-18
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Human Carbonic Anhydrase II in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
To Be Published
9FZP
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BU of 9fzp by Molmil
Pseudomonas aeruginosa penicillin binding protein 3 in complex with cefepime
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Smith, H.G, Allen, M.D, Basak, S, Aniebok, V, Beech, M.J, Alshref, F.M, Farley, A.J.M, Schofield, C.J.
Deposit date:2024-07-05
Release date:2024-10-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of Pseudomonas aeruginosa penicillin binding protein 3 inhibition by the siderophore-antibiotic cefiderocol.
Chem Sci, 15, 2024
9EO4
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BU of 9eo4 by Molmil
Outward-open structure of human dopamine transporter bound to cocaine
Descriptor: CHLORIDE ION, CHOLESTEROL, CHOLESTEROL HEMISUCCINATE, ...
Authors:Nielsen, J.C, Salomon, K, Kalenderoglou, I.E, Bargmeyer, S, Pape, T, Shahsavar, A, Loland, C.J.
Deposit date:2024-03-14
Release date:2024-07-03
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Structure of the human dopamine transporter in complex with cocaine.
Nature, 632, 2024
9GRQ
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BU of 9grq by Molmil
SARS-CoV-2 methyltransferase nsp10-16 in complex with SAM and theophylline
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Kremling, V, Sprenger, J, Oberthuer, D, Kiene, A.
Deposit date:2024-09-12
Release date:2024-09-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of SARS-CoV-2 methyltransferase nsp10-16 with Cap0-site binders
To Be Published
9FVD
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BU of 9fvd by Molmil
Cryo-EM structure of single-layered nucleoprotein-RNA helical assembly from Marburg virus, trimeric repeat unit
Descriptor: Nucleoprotein, RNA (5'-R(P*AP*GP*AP*CP*AP*CP*AP*CP*AP*AP*AP*AP*AP*CP*AP*AP*GP*A)-3')
Authors:Zinzula, L, Beck, F, Camasta, M, Bohn, S, Liu, C, Morado, D, Bracher, A, Plitzko, J.M, Baumeister, W.
Deposit date:2024-06-26
Release date:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of single-layered nucleoprotein-RNA complex from Marburg virus
Nat Commun, 2024
8QQ9
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BU of 8qq9 by Molmil
human carbonic anhydrase I in complex with 1-benzyl-3-(1-hydroxy-3,4-dihydro-1H-benzo[c][1,2]oxaborinin-7-yl)thiourea
Descriptor: 1-[1,1-bis(oxidanyl)-3,4-dihydro-2,1$l^{4}-benzoxaborinin-7-yl]-3-(phenylmethyl)thiourea, Carbonic anhydrase 1, ZINC ION
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-10-04
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:human carbonic anhydrase I in complex with 1-benzyl-3-(1-hydroxy-3,4-dihydro-1H-benzo[c][1,2]oxaborinin-7-yl)thiourea
To Be Published
8QQA
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BU of 8qqa by Molmil
human carbonic anhydrase II in complex with Bithionol
Descriptor: 1,2-ETHANEDIOL, 2,2'-sulfanediylbis(4,6-dichlorophenol), Carbonic anhydrase 2, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-10-04
Release date:2024-10-16
Method:X-RAY DIFFRACTION (1.346 Å)
Cite:human carbonic anhydrase II in complex with Bithionol
To Be Published
8QTN
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BU of 8qtn by Molmil
Cryo-EM structure of the apo yeast Ceramide Synthase
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, AMMONIUM ION, Ceramide synthase LAC1, ...
Authors:Schaefer, J, Clausmeyer, L, Koerner, C, Moeller, A, Froehlich, F.
Deposit date:2023-10-12
Release date:2024-10-23
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM Structure of the Yeast Ceramide Synthase Complex
To Be Published, 2024
8QUN
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BU of 8qun by Molmil
human carbonic anhydrase I in complex with 2-((5-cyano-4-hydroxy-6-(p-tolyl)pyrimidin-2-yl)thio)-N-(4-sulfamoylphenyl)acetamide
Descriptor: 2-[5-cyano-4-(4-methylphenyl)-6-oxidanyl-pyrimidin-2-yl]sulfanyl-N-(4-sulfamoylphenyl)ethanamide, Carbonic anhydrase 1, DIMETHYL SULFOXIDE, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-10-16
Release date:2024-10-23
Method:X-RAY DIFFRACTION (1.606 Å)
Cite:human carbonic anhydrase I in complex with 2-((5-cyano-4-hydroxy-6-(p-tolyl)pyrimidin-2-yl)thio)-N-(4-sulfamoylphenyl)acetamide
To Be Published
7L2Y
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BU of 7l2y by Molmil
HIV Integrase core domain in complex with inhibitor 2-(5-(3-fluorophenyl)-2-(2-(thiophen-2-yl)ethynyl)-1- benzofuran-3-yl)ethanoic acid
Descriptor: 4-{[3-(carboxymethyl)-5-methyl-1-benzofuran-2-yl]ethynyl}benzoic acid, IODIDE ION, Integrase, ...
Authors:Gorman, M.A, Parker, M.W.
Deposit date:2020-12-17
Release date:2021-12-22
Method:X-RAY DIFFRACTION (1.982 Å)
Cite:HIV Integrase core domain in complex with inhibitor
To Be Published
7ODN
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BU of 7odn by Molmil
Crystal structure of TD1-mebendazole complex
Descriptor: CHLORIDE ION, Designed Ankyrin Repeat Protein (DARPIN) D1, GLYCEROL, ...
Authors:Oliva, M.A, Bonato, F, Diaz, J.F.
Deposit date:2021-04-30
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Effect of Clinically Used Microtubule Targeting Drugs on Viral Infection and Transport Function.
Int J Mol Sci, 23, 2022
8QTR
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BU of 8qtr by Molmil
Cryo-EM structure of the FB-bound yeast Ceramide Synthase
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, AMMONIUM ION, Ceramide synthase LAC1, ...
Authors:Schaefer, J, Clausmeyer, L, Koerner, C, Moeller, A, Froehlich, F.
Deposit date:2023-10-13
Release date:2024-10-23
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM Structure of the Yeast Ceramide Synthase Complex
To Be Published, 2024
6OV3
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BU of 6ov3 by Molmil
Crystal structure of human claudin-9 in complex with Clostridium perfringens entertoxin C-terminal domain in open form
Descriptor: Claudin-9, Heat-labile enterotoxin B chain
Authors:Vecchio, A.J, Stroud, R.M.
Deposit date:2019-05-06
Release date:2019-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Claudin-9 structures reveal mechanism for toxin-induced gut barrier breakdown.
Proc.Natl.Acad.Sci.USA, 116, 2019
6ZSH
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BU of 6zsh by Molmil
The mechanism of activation of the actin binding protein EHBP1 by Rab8 family members
Descriptor: EH domain-binding protein 1
Authors:Rai, A, Bleimling, N, Vetter, I.R, Goody, R.S.
Deposit date:2020-07-15
Release date:2020-09-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The mechanism of activation of the actin binding protein EHBP1 by Rab8 family members.
Nat Commun, 11, 2020
4WDE
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BU of 4wde by Molmil
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation T311A
Descriptor: 2',3'-cyclic-nucleotide 3'-phosphodiesterase, GLYCEROL
Authors:Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2014-09-08
Release date:2015-09-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Determinants of ligand binding and catalytic activity in the myelin enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase.
Sci Rep, 5, 2015
4WA7
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BU of 4wa7 by Molmil
Crystal Structure of a GDP-bound Q61L Oncogenic Mutant of Human GT- Pase KRas
Descriptor: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Hunter, J.C, Manandhar, A, Gurbani, D, Chen, Z, Westover, K.D.
Deposit date:2014-08-28
Release date:2015-06-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.986 Å)
Cite:Biochemical and Structural Analysis of Common Cancer-Associated KRAS Mutations.
Mol Cancer Res., 13, 2015
8EQ0
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BU of 8eq0 by Molmil
Escherichia coli pyruvate kinase G381A
Descriptor: GLYCINE, Pyruvate kinase
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-10-07
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EOM
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BU of 8eom by Molmil
TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-5973
Descriptor: 4-(4-methylpiperazine-1-sulfonyl)benzamide, SULFATE ION, TP53-binding protein 1, ...
Authors:The, J, Hong, Z, Headey, S, Gunzburg, M, Doak, B, James, L.I, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2022-10-03
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-5973
to be published
8EQ3
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BU of 8eq3 by Molmil
Escherichia coli pyruvate kinase A301T
Descriptor: IMIDAZOLE, MALONATE ION, Pyruvate kinase, ...
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-10-07
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
4WCI
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BU of 4wci by Molmil
Crystal structure of the 1st SH3 domain from human CD2AP (CMS) in complex with a proline-rich peptide (aa 378-393) from human RIN3
Descriptor: CD2-associated protein, Ras and Rab interactor 3, SULFATE ION
Authors:Rouka, E, Simister, P.C, Janning, M, Kirsch, K.H, Krojer, T, Knapp, S, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Feller, S.M, Structural Genomics Consortium (SGC)
Deposit date:2014-09-04
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Differential Recognition Preferences of the Three Src Homology 3 (SH3) Domains from the Adaptor CD2-associated Protein (CD2AP) and Direct Association with Ras and Rab Interactor 3 (RIN3).
J.Biol.Chem., 290, 2015
7KNV
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BU of 7knv by Molmil
Solution NMR structure of CDHR3 extracellular domain EC1
Descriptor: CALCIUM ION, Cadherin-related family member 3
Authors:Lee, W, Tonelli, M, Frederick, R.O, Watters, K.E, Markley, J.L, Palmenberg, A.C.
Deposit date:2020-11-06
Release date:2021-02-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR Determination of the CDHR3 Rhinovirus-C Binding Domain, EC1
Viruses, 13, 2021
8EU4
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BU of 8eu4 by Molmil
Escherichia coli pyruvate kinase A301S
Descriptor: Pyruvate kinase, SULFATE ION
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-10-18
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
6RFH
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BU of 6rfh by Molmil
Human Carbonic Anhydrase II in complex with 4-Carboxybenzenesulfonamide
Descriptor: (4-CARBOXYPHENYL)(CHLORO)MERCURY, 4-sulfamoylbenzoic acid, Carbonic anhydrase 2, ...
Authors:Gloeckner, S, Heine, A, Klebe, G.
Deposit date:2019-04-15
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.969 Å)
Cite:Human Carbonic Anhydrase II in complex with 4-Carboxybenzenesulfonamide
To Be Published

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PDB entries from 2024-11-06

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