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5WOD
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BU of 5wod by Molmil
De Novo Design of Covalently Constrained Meso-size Protein Scaffolds with Unique Tertiary Structures
Descriptor: 38-mer peptide
Authors:Wu, H, Wu, Y, DeGrado, W.F.
Deposit date:2017-08-01
Release date:2017-10-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2KI8
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BU of 2ki8 by Molmil
Solution NMR structure of tungsten formylmethanofuran dehydrogenase subunit D from Archaeoglobus fulgidus, Northeast Structural Genomics Consortium target AtT7
Descriptor: Tungsten formylmethanofuran dehydrogenase, subunit D (FwdD-2)
Authors:Eletsky, A, Wu, Y, Yee, A, Fares, C, Lee, H.W, Arrowsmith, C.H, Prestegard, J.H, Szyperski, T, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-04-28
Release date:2009-05-26
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution NMR structure of tungsten formylmethanofuran dehydrogenase subunit D from Archaeoglobus fulgidus
To be Published
2KC7
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BU of 2kc7 by Molmil
Solution NMR structure of Bacteroides fragilis protein BF1650. Northeast Structural Genomics Consortium target BfR218
Descriptor: bfr218_protein
Authors:Eletsky, A, Wu, Y, Sukumaran, D, Lee, H, Lee, D.Y, Jiang, M, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Prestegard, J.H, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-12-17
Release date:2009-01-13
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution NMR structure of Bacteroides fragilis protein BF1650. Northeast Structural Genomics Consortium target BfR218
To be Published
2K4Y
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BU of 2k4y by Molmil
NMR Structure of FeoA-like protein from Clostridium acetobutylicum: Northeast Structural Genomics Consortium Target CaR178
Descriptor: FeoA-like protein
Authors:Singarapu, K, Wu, Y, Hua, J, Sukumaran, D, Zhao, L, Jiang, M, Foote, E.L, Xiao, R, Nair, R, Baran, M.C, Swapna, G.V.T, Acton, T, Rost, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-20
Release date:2008-09-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR Structure of FeoA-like protein from Clostridium acetobutylicum: Northeast Structural Genomics Consortium Target CaR178
To be Published
2K5L
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BU of 2k5l by Molmil
Solution NMR Structure of Protein FeoA from Clostridium thermocellum, Northeast Structural Genomics Consortium Target CmR17
Descriptor: FeoA
Authors:Zeri, A, Singarapu, K.K, Mills, J.L, Wu, Y, Garcia, E, Wang, H, Jiang, M, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-29
Release date:2008-09-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution NMR Structure of Protein FeoA from Clostridium thermocellum, Northeast Structural Genomics Consortium Target CmR17
To be Published
2KKV
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BU of 2kkv by Molmil
Solution NMR structure of an integrase domain from protein SPA4288 from Salmonella enterica, Northeast Structural Genomics Consortium Target SlR105H
Descriptor: Integrase
Authors:Mills, J.L, Wu, Y, Sukumaran, D.K, Belote, R.L, Ciccosanti, C, Jiang, M, Nair, R, Rost, B, Acton, T.B, Xiao, R, Swapna, G.V.T, Everett, J.K, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-06-29
Release date:2009-08-25
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Solution NMR structure of an integrase domain from protein SPA4288 from Salmonella enterica, Northeast Structural Genomics Consortium Target SlR105H
To be Published
2KZ2
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BU of 2kz2 by Molmil
Calmodulin, C-terminal domain, F92E mutant
Descriptor: CALCIUM ION, Calmodulin
Authors:Korendovych, I, Kulp, D, Wu, Y, Cheng, H, Roder, H, DeGrado, W.
Deposit date:2010-06-10
Release date:2011-04-20
Last modified:2013-05-22
Method:SOLUTION NMR
Cite:Design of a switchable eliminase.
Proc.Natl.Acad.Sci.USA, 108, 2011
2LFF
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BU of 2lff by Molmil
Solution structure of Diiron protein in presence of 8 eq Zn2+, Northeast Structural Genomics consortium target OR21
Descriptor: Diiron protein, ZINC ION
Authors:Pires, M, Wu, Y, Mills, J.L, Reig, A, Englander, W, Degrado, W, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-06-29
Release date:2011-08-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of Diiron protein in presence of 8 eq Zn2+
To be Published
5AQB
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BU of 5aqb by Molmil
DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
Descriptor: 3G61_DB15V4, GREEN FLUORESCENT PROTEIN
Authors:Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
Deposit date:2015-09-21
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
5AQ9
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BU of 5aq9 by Molmil
DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
Descriptor: MALTOSE-BINDING PERIPLASMIC PROTEIN, OFF7_DB08V4
Authors:Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
Deposit date:2015-09-21
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
5AQA
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BU of 5aqa by Molmil
DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
Descriptor: OFF7_DB04V3, THIOCYANATE ION
Authors:Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
Deposit date:2015-09-21
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
5AQ7
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BU of 5aq7 by Molmil
DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
Descriptor: D12_DB04V3, MALONATE ION
Authors:Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
Deposit date:2015-09-21
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
5AQ8
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BU of 5aq8 by Molmil
DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, OFF7_DB12V4, THIOCYANATE ION
Authors:Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
Deposit date:2015-09-21
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
6IEC
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BU of 6iec by Molmil
Structure of RVFV Gn and human monoclonal antibody R17
Descriptor: NSmGnGc, R17 H chain, R17 L chain
Authors:Wang, Q.H, Wu, Y, Gao, F, Qi, J.X, Gao, G.F.
Deposit date:2018-09-13
Release date:2019-04-10
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Neutralization mechanism of human monoclonal antibodies against Rift Valley fever virus.
Nat Microbiol, 4, 2019
6IEA
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BU of 6iea by Molmil
Structure of RVFV Gn and human monoclonal antibody R13
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, NSmGnGc, ...
Authors:Wang, Q.H, Wu, Y, Gao, F, Qi, J.X, Gao, G.F.
Deposit date:2018-09-13
Release date:2019-04-10
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Neutralization mechanism of human monoclonal antibodies against Rift Valley fever virus.
Nat Microbiol, 4, 2019
6IEK
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BU of 6iek by Molmil
Structure of RVFV Gn and human monoclonal antibody R12
Descriptor: Heavy chain of Fab R12, Light chain of Fab R12, NSmGnGc
Authors:Wang, Q.H, Wu, Y, Gao, F, Qi, J.X, Gao, G.F.
Deposit date:2018-09-14
Release date:2019-04-10
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Neutralization mechanism of human monoclonal antibodies against Rift Valley fever virus.
Nat Microbiol, 4, 2019
6IEB
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BU of 6ieb by Molmil
Structure of RVFV Gn and human monoclonal antibody R15
Descriptor: NSmGnGc, R15 H chain, R15 L chain
Authors:Wang, Q.H, Wu, Y, Gao, F, Qi, J.X, Gao, G.F.
Deposit date:2018-09-13
Release date:2019-04-10
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (2.409 Å)
Cite:Neutralization mechanism of human monoclonal antibodies against Rift Valley fever virus.
Nat Microbiol, 4, 2019
7Y3N
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BU of 7y3n by Molmil
Crystal structure of SARS-CoV receptor binding domain in complex with human antibody BIOLS56
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of BIOLS56, ...
Authors:Rao, X, Chai, Y, Wu, Y, Gao, F.
Deposit date:2022-06-11
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
7WWH
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BU of 7wwh by Molmil
Crystal structure of the Geobacillus thermoglucosidasius feruloyl esterase GthFAE
Descriptor: Alpha/beta hydrolase
Authors:Yang, W, Wu, Y.
Deposit date:2022-02-12
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structure-guided rational design of the Geobacillus thermoglucosidasius feruloyl esterase GthFAE to improve its thermostability.
Biochem.Biophys.Res.Commun., 600, 2022
7Y3O
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BU of 7y3o by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with human antibody BIOLS56
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of BIOLS56, Light chain of BIOLS56, ...
Authors:Rao, X, Gao, F, Wu, Y, Gao, F.
Deposit date:2022-06-11
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
2MLD
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BU of 2mld by Molmil
Solution structure of BmKTX-D19K/K6D
Descriptor: Potassium channel toxin alpha-KTx 3.6
Authors:Hong, J, Lin, D, Chen, Z, Wu, Y.
Deposit date:2014-02-24
Release date:2015-02-25
Method:SOLUTION NMR
Cite:SOLUTION STRUCTURE of BMKTX-D19K
To be Published
2MLA
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BU of 2mla by Molmil
Solution structure of BmKTX-D19K
Descriptor: Potassium channel toxin alpha-KTx 3.6
Authors:Hong, J, Lin, D, Chen, Z, Wu, Y.
Deposit date:2014-02-21
Release date:2015-02-25
Method:SOLUTION NMR
Cite:Solution structure of BmKTX-D19K
To be Published
2M3S
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BU of 2m3s by Molmil
Calmodulin, i85l, f92e, h107i, l112r, a128t, m144r mutant
Descriptor: CALCIUM ION, Calmodulin
Authors:Moroz, Y.S, Wu, Y, Cheng, H, Roder, H, Korendovych, I.V.
Deposit date:2013-01-25
Release date:2013-07-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A single mutation in a regulatory protein produces evolvable allosterically regulated catalyst of nonnatural reaction.
Angew.Chem.Int.Ed.Engl., 52, 2013
6IQT
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BU of 6iqt by Molmil
Crystal Structure of CagV, a VirB8 homolog of T4SS from Helicobacter pylori Strain 26695
Descriptor: Cag pathogenicity island protein (Cag10)
Authors:Wu, X, Zhao, Y, Sun, L, Jiang, M, Wang, Q, Wang, Q, Yang, W, Wu, Y.
Deposit date:2018-11-08
Release date:2019-11-13
Last modified:2020-04-29
Method:X-RAY DIFFRACTION (1.922 Å)
Cite:Crystal structure of CagV, the Helicobacter pylori homologue of the T4SS protein VirB8.
Febs J., 286, 2019
2M01
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BU of 2m01 by Molmil
Solution structure of Kunitz-type neurotoxin LmKKT-1a from scorpion venom
Descriptor: Protease inhibitor LmKTT-1a
Authors:Luo, F, Jiang, L, Liu, M, Chen, Z, Wu, Y.
Deposit date:2012-10-15
Release date:2013-11-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Genomic and structural characterization of Kunitz-type peptide LmKTT-1a highlights diversity and evolution of scorpion potassium channel toxins.
Plos One, 8, 2013

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