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PDB: 29 results

1NH4
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BU of 1nh4 by Molmil
Structure of the coat protein in fd filamentous bacteriophage particles
Descriptor: Major coat protein
Authors:Zeri, A.C, Mesleh, M.F, Nevzorov, A.A, Opella, S.J.
Deposit date:2002-12-18
Release date:2003-05-06
Last modified:2022-02-23
Method:SOLID-STATE NMR
Cite:Structure of the coat protein in fd filamentous bacteriophage particles determined by solid-state NMR spectroscopy
Proc.Natl.Acad.Sci.USA, 100, 2003
2K5L
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BU of 2k5l by Molmil
Solution NMR Structure of Protein FeoA from Clostridium thermocellum, Northeast Structural Genomics Consortium Target CmR17
Descriptor: FeoA
Authors:Zeri, A, Singarapu, K.K, Mills, J.L, Wu, Y, Garcia, E, Wang, H, Jiang, M, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-29
Release date:2008-09-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution NMR Structure of Protein FeoA from Clostridium thermocellum, Northeast Structural Genomics Consortium Target CmR17
To be Published
4U39
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BU of 4u39 by Molmil
Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
Descriptor: Cell division factor, Cell division protein FtsZ, PHOSPHATE ION
Authors:Bisson-Filho, A.W, Discola, K.F, Castellen, P, Blasios, V, Martins, A, Sforca, M.L, Garcia, W, Zeri, A.C, Erickson, H.P, Dessen, A, Gueiros-Filho, F.J.
Deposit date:2014-07-19
Release date:2015-03-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
To be Published
7N5Z
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BU of 7n5z by Molmil
SARS-CoV-2 Main protease C145S mutant
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-06-07
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7N6N
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BU of 7n6n by Molmil
SARS-CoV-2 Main protease C145S mutant in complex with N and C-terminal residues
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2021-06-08
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
5KLE
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BU of 5kle by Molmil
Structure of CBM_E1, a novel carbohydrate-binding module found by sugar cane soil metagenome, complexed with cellopentaose
Descriptor: Carbohydrate binding module E1, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Liberato, M.V, Campos, B.M, Zeri, A.C.M, Squina, F.M.
Deposit date:2016-06-24
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.
J.Biol.Chem., 291, 2016
5KLC
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BU of 5klc by Molmil
Structure of CBM_E1, a novel carbohydrate-binding module found by sugar cane soil metagenome
Descriptor: Carbohydrate binding module E1
Authors:Liberato, M.V, Campos, B.M, Zeri, A.C.M, Squina, F.M.
Deposit date:2016-06-24
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.746 Å)
Cite:A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.
J.Biol.Chem., 291, 2016
5KLF
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BU of 5klf by Molmil
Structure of CBM_E1, a novel carbohydrate-binding module found by sugar cane soil metagenome, complexed with cellopentaose and gadolinium ion
Descriptor: Carbohydrate binding module E1, GADOLINIUM ATOM, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Liberato, M.V, Campos, B.M, Zeri, A.C.M, Squina, F.M.
Deposit date:2016-06-24
Release date:2016-09-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.
J.Biol.Chem., 291, 2016
2MMV
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BU of 2mmv by Molmil
ZapA mutant dimer from Geobacillus stearothermophilus
Descriptor: Cell division protein ZapA
Authors:Nogueira, M.L, Sforca, M, Zeri, A.
Deposit date:2014-03-19
Release date:2015-06-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Backbone and side chain NMR assignments of Geobacillus stearothermophilus ZapA allow identification of residues that mediate the interaction of ZapA with FtsZ.
Biomol.Nmr Assign., 9, 2015
2MRW
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BU of 2mrw by Molmil
Solution Structure of MciZ from Bacillus subtilis
Descriptor: Cell division factor
Authors:Castellen, P, Sforca, M.L, Zeri, A.C.M, Gueiros-Filho, F.J.
Deposit date:2014-07-16
Release date:2015-03-25
Last modified:2015-05-13
Method:SOLUTION NMR
Cite:FtsZ filament capping by MciZ, a developmental regulator of bacterial division.
Proc.Natl.Acad.Sci.USA, 112, 2015
2M70
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BU of 2m70 by Molmil
Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
Descriptor: Poly(A)-binding protein 1
Authors:Sforca, M.L, Domingues, M.N, Zeri, A.C.M, Benedetti, C.E.
Deposit date:2013-04-16
Release date:2014-04-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
To be Published
7KFI
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BU of 7kfi by Molmil
SARS-CoV-2 Main protease immature form - apo structure
Descriptor: 3C-like proteinase, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2020-10-14
Release date:2020-10-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7LDX
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BU of 7ldx by Molmil
SARS-CoV-2 Main protease immature form - F2X Entry Library E06 fragment
Descriptor: (3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-ol, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-01-14
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7KVL
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BU of 7kvl by Molmil
SARS-CoV-2 Main protease immature form - FMAX Library E01 fragment
Descriptor: 2-chloropyridine-4-carboxamide, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2020-11-28
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7MBG
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BU of 7mbg by Molmil
SARS-CoV-2 Main protease in orthorhombic space group
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Fearon, D, Douangamath, A, von Delft, F, Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-03-31
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7KPH
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BU of 7kph by Molmil
SARS-CoV-2 Main Protease in mature form
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2020-11-11
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7KVR
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BU of 7kvr by Molmil
SARS-CoV-2 Main protease immature form - FMAX Library E09 fragment
Descriptor: 3C-like proteinase, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2020-11-28
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7LFP
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BU of 7lfp by Molmil
SARS-CoV-2 Main protease immature form - F2X Entry Library G05 fragment
Descriptor: 3C-like proteinase, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-01-18
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7LFE
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BU of 7lfe by Molmil
SARS-CoV-2 Main protease immature form - F2X Entry Library E03 fragment
Descriptor: (2R,4R)-1-phenylhexahydropyrimidine-2,4-diol, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-01-16
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
2M4I
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BU of 2m4i by Molmil
Solution structure of Bacillus subtilis MinC N-terminal domain
Descriptor: Septum site-determining protein MinC
Authors:Castellen, P, Sforca, M.L, Zeri, A.C.M, Gueiros-Filho, F.J.
Deposit date:2013-02-05
Release date:2014-03-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of Bacillus subtilis MinC N-terminal domain
To be Published
2L8A
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BU of 2l8a by Molmil
Structure of a novel CBM3 lacking the calcium-binding site
Descriptor: Endoglucanase
Authors:Paiva, J.H, Meza, A.N, Sforca, M.L, Navarro, R.Z, Neves, J.L, Santos, C.R, Murakami, M.T, Zeri, A.C.
Deposit date:2011-01-07
Release date:2011-12-21
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168.
Biochem.J., 441, 2012
7JR4
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BU of 7jr4 by Molmil
SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Nascimento, A.F.Z, de Oliveira, R.R, Zeri, A.C.M, Trivella, D.B.B.
Deposit date:2020-08-11
Release date:2020-08-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues
To be Published
7JR3
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BU of 7jr3 by Molmil
SARS-CoV-2 3CL protease crystallized under reducing conditions
Descriptor: 3C-like proteinase
Authors:de Oliveira, R.R, Nascimento, A.F.Z, Zeri, A.C.M, Trivella, D.B.B.
Deposit date:2020-08-11
Release date:2020-08-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:SARS-CoV-2 3CL protease crystallized under reducing conditions.
To be Published
2JR1
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BU of 2jr1 by Molmil
Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa.
Descriptor: Virulence regulator
Authors:Rosselli, L.K, Sforca, M.L, Souza, A.P, Zeri, A.C.
Deposit date:2007-06-18
Release date:2007-09-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa.
To be Published
2KDO
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BU of 2kdo by Molmil
Structure of the human Shwachman-Bodian-Diamond syndrome protein, SBDS
Descriptor: Ribosome maturation protein SBDS
Authors:de Oliveira, J.F, Sforca, M.L, Blumenschein, T, Guimaraes, B.G, Zanchin, N.I.T, Zeri, A.C.
Deposit date:2009-01-14
Release date:2010-01-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure, dynamics, and RNA interaction analysis of the human SBDS protein.
J.Mol.Biol., 396, 2010

 

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