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4ME7
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BU of 4me7 by Molmil
Crystal structure of Bacillus subtilis toxin MazF in complex with cognate antitoxin MazE
分子名称: Antitoxin EndoAI, mRNA interferase EndoA
著者Simanshu, D.K, Patel, D.J.
登録日2013-08-25
公開日2013-10-23
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.918 Å)
主引用文献Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis.
Mol.Cell, 52, 2013
4MDX
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BU of 4mdx by Molmil
Crystal structure of Bacillus subtilis MazF in complex with RNA
分子名称: IODIDE ION, RNA, mRNA, ...
著者Simanshu, D.K, Patel, D.J.
登録日2013-08-23
公開日2013-10-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis.
Mol.Cell, 52, 2013
7CRQ
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BU of 7crq by Molmil
NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (2:1 binding mode)
分子名称: DNA (168-MER), Histone H2A, Histone H2B, ...
著者Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z.
登録日2020-08-14
公開日2020-10-21
最終更新日2021-03-03
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases.
Nature, 590, 2021
7CRP
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BU of 7crp by Molmil
NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (1:1 binding mode)
分子名称: DNA (168-MER), Histone H2A, Histone H2B, ...
著者Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z.
登録日2020-08-14
公開日2020-10-21
最終更新日2021-03-03
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases.
Nature, 590, 2021
7CRO
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BU of 7cro by Molmil
NSD2 bearing E1099K/T1150A dual mutation in complex with 187-bp NCP
分子名称: DNA (168-MER), Histone H2A, Histone H2B, ...
著者Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z.
登録日2020-08-14
公開日2020-10-21
最終更新日2021-03-03
実験手法ELECTRON MICROSCOPY (3.75 Å)
主引用文献Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases.
Nature, 590, 2021
7CRR
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BU of 7crr by Molmil
Native NSD3 bound to 187-bp nucleosome
分子名称: DNA (168-MER), DNA(168-MER), Histone H2A, ...
著者Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z.
登録日2020-08-14
公開日2020-10-21
最終更新日2021-03-03
実験手法ELECTRON MICROSCOPY (3.48 Å)
主引用文献Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases.
Nature, 590, 2021
7VKI
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BU of 7vki by Molmil
ESRP1 qRRM2 in complex with 12mer-RNA
分子名称: Epithelial splicing regulatory protein 1, RNA (12-mer)
著者Wu, B.X, Patel, D.J.
登録日2021-09-30
公開日2022-10-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献ESRP1 controls biogenesis and function of a large abundant multiexon circRNA.
Nucleic Acids Res., 2023
6DBP
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BU of 6dbp by Molmil
RNA-recognition motif 1 of human MSI2
分子名称: RNA-binding protein Musashi homolog 2
著者Goldgur, Y, Kharas, M.G, Minuesa, G.
登録日2018-05-03
公開日2019-05-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.603 Å)
主引用文献Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia.
Nat Commun, 10, 2019
7W27
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BU of 7w27 by Molmil
Crystal structure of BEND3-BEN4-DNA complex
分子名称: BEN domain-containing protein 3, DNA (5'-D(P*GP*GP*AP*CP*CP*CP*AP*CP*GP*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*GP*CP*GP*TP*GP*GP*GP*TP*C)-3')
著者Zheng, L, Ren, A.
登録日2021-11-22
公開日2022-02-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Distinct structural bases for sequence-specific DNA binding by mammalian BEN domain proteins.
Genes Dev., 36, 2022
5K7E
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BU of 5k7e by Molmil
The structure of pistol ribozyme, soaked with Mn2+
分子名称: DNA/RNA 11-MER, MANGANESE (II) ION, RNA 47-MER
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.27 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7C
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BU of 5k7c by Molmil
The native structure of native pistol ribozyme
分子名称: DNA/RNA 11-MER, MAGNESIUM ION, RNA 47-MER
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7D
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BU of 5k7d by Molmil
The structure of native pistol ribozyme, bound to Iridium
分子名称: DNA/RNA 11-MER, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5KDM
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BU of 5kdm by Molmil
Crystal structure of EBV tegument protein BNRF1 in complex with histone chaperone DAXX and histones H3.3-H4
分子名称: Death domain-associated protein 6, Histone H3.3, Histone H4, ...
著者Huang, H, Patel, D.
登録日2016-06-08
公開日2016-09-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural basis underlying viral hijacking of a histone chaperone complex.
Nat Commun, 7, 2016
5JA4
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BU of 5ja4 by Molmil
Crystal structure of human TONSL and MCM2 HBDs binding to a histone H3-H4 tetramer
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA replication licensing factor MCM2, GLYCEROL, ...
著者Huang, H, Patel, D.
登録日2016-04-11
公開日2016-06-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.424 Å)
主引用文献H4K20me0 marks post-replicative chromatin and recruits the TONSL-MMS22L DNA repair complex.
Nature, 534, 2016
5XP8
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BU of 5xp8 by Molmil
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand
分子名称: DNA (5'-D(*AP*GP*T)-3'), DNA (5'-D(*CP*AP*AP*CP*C*AP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(P*TP*GP*AP*GP*AP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3'), ...
著者Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, J.D, Wang, Y.
登録日2017-06-01
公開日2018-04-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes.
Nucleic Acids Res., 45, 2017
5XQ2
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BU of 5xq2 by Molmil
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 5A6 on the guide strand
分子名称: DNA (5'-D(*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(*AP*GP*T)-3'), DNA (5'-D(P*TP*GP*AP*AP*GP*AP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3'), ...
著者Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, D, Wang, Y.
登録日2017-06-06
公開日2017-10-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.33 Å)
主引用文献Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes
Nucleic Acids Res., 45, 2017
5XPA
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BU of 5xpa by Molmil
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 9'U10' on the target strand
分子名称: DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'), MAGNESIUM ION, RNA (5'-R(P*AP*UP*AP*CP*AP*AP*CP*CP*GP*UP*UP*CP*UP*AP*CP*UP*CP*CP*G)-3'), ...
著者Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, J.D, Wang, Y.
登録日2017-06-01
公開日2018-04-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes.
Nucleic Acids Res., 45, 2017
5XPG
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BU of 5xpg by Molmil
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 6'U7' on the target strand
分子名称: 5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*A P*GP*T)-3', 5'-R(*UP*AP*U*AP*CP*AP*AP*CP*CP*UP*AP*CP*AP*UP*AP*CP*CP*UP*CP* G)-3', MAGNESIUM ION, ...
著者Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, J.D, Wang, Y.
登録日2017-06-02
公開日2018-04-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes.
Nucleic Acids Res., 45, 2017
6JQ5
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BU of 6jq5 by Molmil
The structure of Hatchet Ribozyme
分子名称: MAGNESIUM ION, RNA (82-MER)
著者Ren, A, Zheng, L.
登録日2019-03-29
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.059 Å)
主引用文献Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JQ6
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BU of 6jq6 by Molmil
Hatchet Ribozyme Structure soaking with Ir(NH3)6+
分子名称: IRIDIUM HEXAMMINE ION, RNA (81-MER)
著者Ren, A, Zheng, L.
登録日2019-03-29
公開日2019-06-12
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.626 Å)
主引用文献Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
1SI2
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BU of 1si2 by Molmil
Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex of deoxynucleotide overhang
分子名称: 5'-R(*CP*GP*UP*GP*AP*CP*U)-D(P*CP*T)-3', Eukaryotic translation initiation factor 2C 1
著者Ye, K, Ma, J.B, Patel, D.
登録日2004-02-26
公開日2004-05-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004
1SI3
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BU of 1si3 by Molmil
Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex
分子名称: 5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3', Eukaryotic translation initiation factor 2C 1
著者Ye, K, Ma, J.B, Patel, D.
登録日2004-02-27
公開日2004-05-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004
7CJ0
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BU of 7cj0 by Molmil
Crystal structure of DNAJC9 HBD in complex with H3.3-H4 dimer and MCM2 HBD
分子名称: DNA replication licensing factor MCM2, DnaJ homolog subfamily C member 9, GLYCEROL, ...
著者Bao, H, Huang, H.
登録日2020-07-09
公開日2021-04-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network.
Mol.Cell, 81, 2021
7CIZ
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BU of 7ciz by Molmil
Crystal structure of DNAJC9 HBD helix2 in complex with H3.3-H4 dimer and MCM2 HBD
分子名称: DNA replication licensing factor MCM2, DnaJ homolog subfamily C member 9, Histone H3.3, ...
著者Bao, H, Huang, H.
登録日2020-07-08
公開日2021-04-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network.
Mol.Cell, 81, 2021
7CFB
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BU of 7cfb by Molmil
Drosophila melanogaster Krimper eTud1 apo structure
分子名称: FI20010p1, SULFATE ION
著者Hu, H, Li, S.
登録日2020-06-25
公開日2021-06-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex.
Nat Commun, 12, 2021

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