Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5K30
DownloadVisualize
BU of 5k30 by Molmil
Crystal structure of methionine gamma-lyase from Citrobacter freundii modified by S-Ethyl-L-cysteine sulfoxide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, Methionine gamma-lyase, ...
Authors:Revtovich, S.V, Nikulin, A.D, Morozova, E.A, Demidkina, T.V.
Deposit date:2016-05-19
Release date:2017-07-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Sulfoxides of sulfur-containing amino acids are suicide substrates of Citrobacter freundii methionine gamma-lyase. Structural bases of the enzyme inactivation.
Biochimie, 168, 2020
3QSY
DownloadVisualize
BU of 3qsy by Molmil
Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea
Descriptor: METHIONINE, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Translation initiation factor 2 subunit alpha, ...
Authors:Nikonov, O.S, Stolboushkina, E.A, Zelinskaya, N.V, Nikulin, A.D, Garber, M.B, Nikonov, S.V.
Deposit date:2011-02-22
Release date:2012-03-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the archaeal translation initiation factor 2 in complex with a GTP analogue and Met-tRNAf(Met.)
J.Mol.Biol., 425, 2013
6S0C
DownloadVisualize
BU of 6s0c by Molmil
Crystal structure of methionine gamma-lyase from Citrobacter freundii modified by dimethylthiosulfinate
Descriptor: Cystathionine gamma-synthase, PYRIDOXAL-5'-PHOSPHATE, TRIETHYLENE GLYCOL
Authors:Revtovich, S.V, Morozova, E.A, Nikulin, A.D, Demidkina, T.V.
Deposit date:2019-06-14
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Sulfoxides of sulfur-containing amino acids are suicide substrates of Citrobacter freundii methionine gamma-lyase. Structural bases of the enzyme inactivation.
Biochimie, 168, 2020
3QUI
DownloadVisualize
BU of 3qui by Molmil
Crystal structure of Pseudomonas aeruginosa Hfq in complex with ADPNP
Descriptor: ADENINE, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Nikulin, A.D, Murina, V.N, Gabdulkhakov, A.G.
Deposit date:2011-02-24
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.933 Å)
Cite:Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
5MKI
DownloadVisualize
BU of 5mki by Molmil
Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Like-Sm ribonucleoprotein core
Authors:Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
Deposit date:2016-12-05
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.048 Å)
Cite:Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
5MKL
DownloadVisualize
BU of 5mkl by Molmil
Crystal structure of SmAP (LSm) protein from Sulfolobus acidocaldarius
Descriptor: Sm ribonucleo
Authors:Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
Deposit date:2016-12-05
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.086 Å)
Cite:Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
4J6X
DownloadVisualize
BU of 4j6x by Molmil
Crystal structure of Hfq from Pseudomonas aeruginosa in complex with UTP
Descriptor: Protein hfq, URIDINE 5'-TRIPHOSPHATE
Authors:Nikulin, A.D, Murina, V, Lekontseva, N.
Deposit date:2013-02-12
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.222 Å)
Cite:Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
4J6Y
DownloadVisualize
BU of 4j6y by Molmil
Hfq from Pseudomonas aeruginosa crystallized in GTP presence
Descriptor: CADMIUM ION, Protein hfq
Authors:Nikulin, A.D, Murina, V, Lekontseva, N.
Deposit date:2013-02-12
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1405 Å)
Cite:Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
5DX5
DownloadVisualize
BU of 5dx5 by Molmil
Crystal structure of methionine gamma-lyase from Clostridium sporogenes
Descriptor: CHLORIDE ION, Methionine gamma-lyase, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Revtovich, S.V, Nikulin, A.D, Morozova, E.A, Anufrieva, N.V, Demidkina, T.V.
Deposit date:2015-09-23
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure of methionine gamma-lyase from Clostridium sporogenes.
Acta Crystallogr.,Sect.F, 72, 2016
2PMD
DownloadVisualize
BU of 2pmd by Molmil
The structures of aIF2gamma subunit from the archaeon Sulfolobus solfataricus in the GDP-bound form.
Descriptor: GUANOSINE-5'-DIPHOSPHATE, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, PYROPHOSPHATE, ...
Authors:Nikonov, O.S, Stolboushkina, E.A, Nikulin, A.D, Hasenohrl, D, Blaesi, U, Manstein, D.J, Fedorov, R.V, Garber, M.B, Nikonov, S.V.
Deposit date:2007-04-21
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:New Insights into the Interactions of the Translation Initiation Factor 2 from Archaea with Guanine Nucleotides and Initiator tRNA.
J.Mol.Biol., 373, 2007
2PLF
DownloadVisualize
BU of 2plf by Molmil
The structure of aIF2gamma subunit from the archaeon Sulfolobus solfataricus in the nucleotide-free form.
Descriptor: Translation initiation factor 2 gamma subunit
Authors:Nikonov, O.S, Stolboushkina, E.A, Nikulin, A.D, Hasenohrl, D, Blaesi, U, Manstein, D.J, Fedorov, R.V, Garber, M.B, Nikonov, S.V.
Deposit date:2007-04-19
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:New Insights into the Interactions of the Translation Initiation Factor 2 from Archaea with Guanine Nucleotides and Initiator tRNA.
J.Mol.Biol., 373, 2007
1AN7
DownloadVisualize
BU of 1an7 by Molmil
RIBOSOMAL PROTEIN S8 FROM THERMUS THERMOPHILUS
Descriptor: RIBOSOMAL PROTEIN S8
Authors:Nevskaya, N, Nikonov, S, Al-Karadaghi, S.
Deposit date:1997-06-27
Release date:1998-07-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site.
J.Mol.Biol., 279, 1998
487D
DownloadVisualize
BU of 487d by Molmil
SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
Descriptor: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L14, ...
Authors:Brimacombe, R, Mueller, F.
Deposit date:2000-02-23
Release date:2000-04-10
Last modified:2023-06-07
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
J.Mol.Biol., 298, 2000
4J6W
DownloadVisualize
BU of 4j6w by Molmil
Crystal structure of HFQ from Pseudomonas aeruginosa in complex with CTP
Descriptor: CHLORIDE ION, CYTIDINE-5'-DIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, ...
Authors:Nikulin, A.D, Murina, V, Lekontseva, N.
Deposit date:2013-02-12
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
1F7Y
DownloadVisualize
BU of 1f7y by Molmil
THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY
Descriptor: 16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, ...
Authors:Ennifar, E, Nikouline, A, Serganov, A, Tishchenko, S, Nevskaya, N, Garber, M, Ehresmann, B, Ehresmann, C, Nikonov, S, Dumas, P.
Deposit date:2000-06-28
Release date:2000-11-22
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of UUCG tetraloop.
J.Mol.Biol., 304, 2000
2VPL
DownloadVisualize
BU of 2vpl by Molmil
The structure of the complex between the first domain of L1 protein from Thermus thermophilus and mRNA from Methanococcus jannaschii
Descriptor: 50S RIBOSOMAL PROTEIN L1, FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE, POTASSIUM ION
Authors:Kljashtorny, V, Tishchenko, S, Nevskaya, N, Nikonov, S, Garber, M.
Deposit date:2008-03-01
Release date:2008-09-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA.
J. Mol. Biol., 383, 2008
2RDO
DownloadVisualize
BU of 2rdo by Molmil
50S subunit with EF-G(GDPNP) and RRF bound
Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L1, 50S ribosomal protein L11, ...
Authors:Gao, N, Zavialov, A.V, Ehrenberg, M, Frank, J.
Deposit date:2007-09-24
Release date:2008-03-04
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.
J.Mol.Biol., 374, 2007
1FKA
DownloadVisualize
BU of 1fka by Molmil
STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Descriptor: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
Authors:Schluenzen, F, Tocilj, A, Zarivach, R, Harms, J, Gluehmann, M, Janell, D, Bashan, A, Bartels, H, Agmon, I, Franceschi, F, Yonath, A.
Deposit date:2000-08-09
Release date:2000-09-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution.
Cell(Cambridge,Mass.), 102, 2000
1EG0
DownloadVisualize
BU of 1eg0 by Molmil
FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Descriptor: FORMYL-METHIONYL-TRNA, FRAGMENT OF 16S RRNA HELIX 23, FRAGMENT OF 23S RRNA, ...
Authors:Gabashvili, I.S, Agrawal, R.K, Spahn, C.M.T, Grassucci, R.A, Svergun, D.I, Frank, J, Penczek, P.
Deposit date:2000-02-11
Release date:2000-03-06
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Solution structure of the E. coli 70S ribosome at 11.5 A resolution.
Cell(Cambridge,Mass.), 100, 2000
1QD7
DownloadVisualize
BU of 1qd7 by Molmil
PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Descriptor: CENTRAL FRAGMENT OF 16 S RNA, END FRAGMENT OF 16 S RNA, S15 RIBOSOMAL PROTEIN, ...
Authors:Clemons Jr, W.M, May, J.L.C, Wimberly, B.T, McCutcheon, J.P, Capel, M.S, Ramakrishnan, V.
Deposit date:1999-07-09
Release date:1999-08-31
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution.
Nature, 400, 1999
<12

 

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon