2VPL

The structure of the complex between the first domain of L1 protein from Thermus thermophilus and mRNA from Methanococcus jannaschii

Summary for 2VPL

Related1ZHO 1AD2 2J01 1EG0 487D 1U63
Descriptor50S RIBOSOMAL PROTEIN L1, FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE, POTASSIUM ION, ... (4 entities in total)
Functional Keywordsribosomal protein, rna-protein complex, translation regulation, translation, repressor, rna-binding, trna-binding, rrna-binding
Biological sourceTHERMUS THERMOPHILUS
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Total number of polymer chains4
Total molecular weight61465.59
Authors
Kljashtorny, V.,Tishchenko, S.,Nevskaya, N.,Nikonov, S.,Garber, M. (deposition date: 2008-03-01, release date: 2008-09-23, Last modification date: 2017-08-09)
Primary citation
Tishchenko, S.,Kljashtorny, V.,Kostareva, O.,Nevskaya, N.,Nikulin, A.,Gulak, P.,Piendl, W.,Garber, M.,Nikonov, S.
Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA.
J. Mol. Biol., 383:301-305, 2008
PubMed: 18778715 (PDB entries with the same primary citation)
DOI: 10.1016/j.jmb.2008.08.058
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliersRNA backbone0.26920.4%2.2%9.2%0.45MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution