Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6CU7
DownloadVisualize
BU of 6cu7 by Molmil
Alpha Synuclein fibril formed by full length protein - Rod Polymorph
Descriptor: Alpha-synuclein
Authors:Li, B, Hatami, A, Ge, P, Murray, K.A, Sheth, P, Zhang, M, Nair, G, Sawaya, M.R, Zhu, C, Broad, M, Shin, W.S, Ye, S, John, V, Eisenberg, D.S, Zhou, Z.H, Jiang, L.
Deposit date:2018-03-23
Release date:2018-09-12
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM of full-length alpha-synuclein reveals fibril polymorphs with a common structural kernel.
Nat Commun, 9, 2018
7D3U
DownloadVisualize
BU of 7d3u by Molmil
Structure of Mrp complex from Dietzia sp. DQ12-45-1b
Descriptor: Cation antiporter, DODECYL-BETA-D-MALTOSIDE, Monovalent Na+/H+ antiporter subunit A, ...
Authors:Li, B, Zhang, K.D, Wu, X.L, Zhang, X.C.
Deposit date:2020-09-21
Release date:2020-12-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the Dietzia Mrp complex reveals molecular mechanism of this giant bacterial sodium proton pump.
Proc.Natl.Acad.Sci.USA, 117, 2020
6INY
DownloadVisualize
BU of 6iny by Molmil
Crystal structure of an uncharacterized protein
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, UPF0061 protein YdiU
Authors:Li, B, Yuan, Z.
Deposit date:2018-10-29
Release date:2020-01-01
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Crystal structure of an uncharacterized protein
To Be Published
6III
DownloadVisualize
BU of 6iii by Molmil
Crystal structure of an uncharacterized protein
Descriptor: ADENOSINE MONOPHOSPHATE, IMIDODIPHOSPHORIC ACID, MAGNESIUM ION, ...
Authors:Li, B, Yuan, Z.
Deposit date:2018-10-06
Release date:2019-10-09
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.113 Å)
Cite:Crystal structure of an uncharacterized protein
To Be Published
6K20
DownloadVisualize
BU of 6k20 by Molmil
Structure of Apo YdiU
Descriptor: MAGNESIUM ION, Protein adenylyltransferase SelO
Authors:Li, B, Yang, Y, Ma, Y.
Deposit date:2019-05-13
Release date:2020-05-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structure of Apo-YdiU
To Be Published
5HKP
DownloadVisualize
BU of 5hkp by Molmil
Crystal structure of mouse Tankyrase/human TRF1 complex
Descriptor: Tankyrase-1, Telomeric repeat-binding factor 1
Authors:Wang, Z, Li, B, Rao, Z, Xu, W.
Deposit date:2016-01-14
Release date:2016-03-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a tankyrase 1-telomere repeat factor 1 complex.
Acta Crystallogr F Struct Biol Commun, 72, 2016
4L7F
DownloadVisualize
BU of 4l7f by Molmil
Co-crystal Structure of JNK1 and AX13587
Descriptor: Mitogen-activated protein kinase 8, N-[1-(4-fluorophenyl)cyclopropyl]-4-[(trans-4-hydroxycyclohexyl)amino]imidazo[1,2-a]quinoxaline-8-carboxamide
Authors:Walter, R.L, Ranieri, G.M, Riggs, A.M, Weissig, H, Li, B, Shreder, K.R.
Deposit date:2013-06-13
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Hit-to-lead optimization and kinase selectivity of imidazo[1,2-a]quinoxalin-4-amine derived JNK1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
6LNA
DownloadVisualize
BU of 6lna by Molmil
YdiU complex with AMPNPP and Mn2+
Descriptor: CALCIUM ION, MANGANESE (II) ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Li, B, Yang, Y, Ma, Y.
Deposit date:2019-12-28
Release date:2020-12-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:The YdiU Domain Modulates Bacterial Stress Signaling through Mn 2+ -Dependent UMPylation.
Cell Rep, 32, 2020
7TXO
DownloadVisualize
BU of 7txo by Molmil
Selenomethionine Labeled Structure of RexT
Descriptor: CHLORIDE ION, Transcriptional regulator
Authors:Bridwell-Rabb, J, Li, B.
Deposit date:2022-02-09
Release date:2022-03-23
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and mechanistic basis for redox sensing by the cyanobacterial transcription regulator RexT.
Commun Biol, 5, 2022
7TXM
DownloadVisualize
BU of 7txm by Molmil
Oxidized Structure of RexT
Descriptor: HYDROGEN PEROXIDE, Transcriptional regulator
Authors:Bridwell-Rabb, J, Li, B.
Deposit date:2022-02-09
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structural and mechanistic basis for redox sensing by the cyanobacterial transcription regulator RexT.
Commun Biol, 5, 2022
7TXN
DownloadVisualize
BU of 7txn by Molmil
Reduced Structure of RexT
Descriptor: CHLORIDE ION, GLYCEROL, Transcriptional regulator
Authors:Bridwell-Rabb, J, Li, B.
Deposit date:2022-02-09
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and mechanistic basis for redox sensing by the cyanobacterial transcription regulator RexT.
Commun Biol, 5, 2022
7XXI
DownloadVisualize
BU of 7xxi by Molmil
Cryo-EM structure of the purinergic receptor P2Y12R in complex with 2MeSADP and Gi
Descriptor: 2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Tan, Q, Li, B, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-05-30
Release date:2023-06-07
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into signal transduction of the purinergic receptors P2Y1R and P2Y12R.
Protein Cell, 14, 2023
7XXH
DownloadVisualize
BU of 7xxh by Molmil
Cryo-EM structure of the purinergic receptor P2Y1R in complex with 2MeSADP and G11
Descriptor: 2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate), Guanine nucleotide-binding protein G(11) subunit alpha, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Tan, Q, Li, B, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-05-30
Release date:2023-06-07
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into signal transduction of the purinergic receptors P2Y1R and P2Y12R.
Protein Cell, 14, 2023
7DA7
DownloadVisualize
BU of 7da7 by Molmil
Mouse Toll-like receptor 3 ectodomain in complex with lncRNA Rmrp in elongated form
Descriptor: RNA component of mitochondrial RNAase P (Rmrp), RNase MRP RNA, Toll-like receptor 3
Authors:Li, B, Cao, X.
Deposit date:2020-10-15
Release date:2021-10-20
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Endosomal lncRNA Rmrp is required for TLR3 innate sensing by engaging TLR3 dimerization
To Be Published
7DAS
DownloadVisualize
BU of 7das by Molmil
Mouse Toll-like receptor 3 ectodomain in complex with lncRNA Rmrp in lapped form
Descriptor: RNA component of mitochondrial RNAase P (Rmrp), RNase MRP RNA, Toll-like receptor 3
Authors:Li, B, Cao, X.
Deposit date:2020-10-18
Release date:2021-10-20
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Endosomal lncRNA Rmrp is required for TLR3 innate sensing by engaging TLR3 dimerization
To Be Published
7M1N
DownloadVisualize
BU of 7m1n by Molmil
Wild-type Hydrogenobacter thermophilus ferredoxin 1
Descriptor: IRON/SULFUR CLUSTER, Putative ferredoxin
Authors:Steindel, P.S, Li, B, Elliott, S.J.
Deposit date:2021-03-13
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Maximizing (Electro)catalytic CO2 Reduction with a Ferredoxin-Based Reduction Potential Gradient
Acs Catalysis, 11, 2021
7M1O
DownloadVisualize
BU of 7m1o by Molmil
Hydrogenobacter thermophilus ferredoxin 1 S64A variant
Descriptor: IRON/SULFUR CLUSTER, Putative ferredoxin
Authors:Steindel, P.S, Li, B, Elliott, S.J.
Deposit date:2021-03-13
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98388708 Å)
Cite:Maximizing (Electro)catalytic CO2 Reduction with a Ferredoxin-Based Reduction Potential Gradient
Acs Catalysis, 11, 2021
1CZ8
DownloadVisualize
BU of 1cz8 by Molmil
VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH AN AFFINITY MATURED ANTIBODY
Descriptor: HEAVY CHAIN OF NEUTRALIZING ANTIBODY, LIGHT CHAIN OF NEUTRALIZING ANTIBODY, SULFATE ION, ...
Authors:Chen, Y, Wiesmann, C, Fuh, G, Li, B, Christinger, H.W, McKay, P, de Vos, A.M, Lowman, H.B.
Deposit date:1999-09-01
Release date:2000-03-20
Last modified:2017-04-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Selection and analysis of an optimized anti-VEGF antibody: crystal structure of an affinity-matured Fab in complex with antigen.
J.Mol.Biol., 293, 1999
2C0I
DownloadVisualize
BU of 2c0i by Molmil
Src family kinase Hck with bound inhibitor A-420983
Descriptor: CALCIUM ION, N-(4-{4-AMINO-1-[4-(4-METHYLPIPERAZIN-1-YL)-TRANS-CYCLOHEXYL]-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL}-2-METHOXYPHENYL)-1-METHYL-1H-INDOLE-2-CARBOXAMIDE, TYROSINE-PROTEIN KINASE HCK
Authors:Borhani, D.W, Burchat, A, Calderwood, D.J, Hirst, G.C, Li, B, Loew, A.
Deposit date:2005-09-03
Release date:2006-09-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of A-770041, a Src-Family Selective Orally Active Lck Inhibitor that Prevents Organ Allograft Rejection.
Bioorg.Med.Chem.Lett., 16, 2006
2C0T
DownloadVisualize
BU of 2c0t by Molmil
Src family kinase Hck with bound inhibitor A-641359
Descriptor: CALCIUM ION, N-(4-{4-AMINO-1-[1-(TETRAHYDRO-2H-PYRAN-4-YL)PIPERIDIN-4-YL]-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL}-2-METHOXYPHENYL)-1-METHYL-1H-INDOLE-2-CARBOXAMIDE, TYROSINE-PROTEIN KINASE HCK
Authors:Borhani, D.W, Burchat, A, Calderwood, D.J, Hirst, G.C, Li, B, Loew, A.
Deposit date:2005-09-07
Release date:2006-09-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of A-770041, a Src-Family Selective Orally Active Lck Inhibitor that Prevents Organ Allograft Rejection.
Bioorg.Med.Chem.Lett., 16, 2006
1KAT
DownloadVisualize
BU of 1kat by Molmil
Solution Structure of a Phage-Derived Peptide Antagonist in Complex with Vascular Endothelial Growth Factor
Descriptor: Phage-Derived Peptide Antagonist, Vascular Endothelial Growth Factor
Authors:Pan, B, Li, B, Russell, S.J, Tom, J.Y.K, Cochran, A.G, Fairbrother, W.J.
Deposit date:2001-11-02
Release date:2002-11-02
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution Structure of a Phage-derived Peptide Antagonist in Complex with Vascular Endothelial Growth Factor
J.Mol.Biol., 316, 2002
2C0O
DownloadVisualize
BU of 2c0o by Molmil
Src family kinase Hck with bound inhibitor A-770041
Descriptor: CALCIUM ION, N-(4-{1-[4-(4-ACETYLPIPERAZIN-1-YL)-TRANS-CYCLOHEXYL]-4-AMINO-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL}-2-METHOXYPHENYL)-1-METHYL-1H-INDOLE-2-CARBOXAMIDE, TYROSINE-PROTEIN KINASE HCK
Authors:Borhani, D.W, Burchat, A, Calderwood, D.J, Hirst, G.C, Li, B, Loew, A.
Deposit date:2005-09-06
Release date:2006-09-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Discovery of A-770041, a Src-Family Selective Orally Active Lck Inhibitor that Prevents Organ Allograft Rejection.
Bioorg.Med.Chem.Lett., 16, 2006
3DL4
DownloadVisualize
BU of 3dl4 by Molmil
Non-Aged Form of Mouse Acetylcholinesterase Inhibited by Tabun- Update
Descriptor: Acetylcholinesterase, HEXAETHYLENE GLYCOL
Authors:Carletti, E, Li, H, Li, B, Ekstrom, F, Nicolet, Y, Loiodice, M, Gillon, E, Froment, M.T, Lockridge, O, Schopfer, L.M, Masson, P, Nachon, F.
Deposit date:2008-06-26
Release date:2008-12-02
Last modified:2021-03-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Aging of Cholinesterases Phosphylated by Tabun Proceeds through O-Dealkylation.
J.Am.Chem.Soc., 130, 2008
3DL7
DownloadVisualize
BU of 3dl7 by Molmil
Aged Form of Mouse Acetylcholinesterase Inhibited by Tabun- Update
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase, CHLORIDE ION, ...
Authors:Carletti, E, Li, H, Li, B, Ekstrom, F, Nicolet, Y, Loiodice, M, Gillon, E, Froment, M.T, Lockridge, O, Schopfer, L.M, Masson, P, Nachon, F.
Deposit date:2008-06-26
Release date:2008-12-02
Last modified:2021-03-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Aging of Cholinesterases Phosphylated by Tabun Proceeds through O-Dealkylation.
J.Am.Chem.Soc., 130, 2008
1RWE
DownloadVisualize
BU of 1rwe by Molmil
Enhancing the activity of insulin at receptor edge: crystal structure and photo-cross-linking of A8 analogues
Descriptor: CHLORIDE ION, Insulin, PHENOL, ...
Authors:Wan, Z, Xu, B, Chu, Y.C, Li, B, Nakagawa, S.H, Qu, Y, Hu, S.Q, Katsoyannis, P.G, Weiss, M.A.
Deposit date:2003-12-16
Release date:2005-02-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Enhancing the activity of insulin at the receptor interface: crystal structure and photo-cross-linking of A8 analogues.
Biochemistry, 43, 2004

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon