Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2QPD
DownloadVisualize
BU of 2qpd by Molmil
An unexpected outcome of surface-engineering an integral membrane protein: Improved crystallization of cytochrome ba3 oxidase from Thermus thermophilus
Descriptor: COPPER (I) ION, Cytochrome c oxidase polypeptide 2A, Cytochrome c oxidase subunit 1, ...
Authors:Liu, B, Luna, V.M, Chen, Y, Stout, C.D, Fee, J.A.
Deposit date:2007-07-23
Release date:2007-12-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.
Acta Crystallogr.,Sect.F, 63, 2007
1N6B
DownloadVisualize
BU of 1n6b by Molmil
Microsomal Cytochrome P450 2C5/3LVdH Complex with a dimethyl derivative of sulfaphenazole
Descriptor: 4-METHYL-N-METHYL-N-(2-PHENYL-2H-PYRAZOL-3-YL)BENZENESULFONAMIDE, Cytochrome P450 2C5, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Wester, M.R, Johnson, E.F, Marques-Soares, C, Dansette, P.M, Mansuy, D, Stout, C.D.
Deposit date:2002-11-09
Release date:2003-06-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a Substrate Complex of Mammalian Cytochrome P450 2C5 at 2.3 A Resolution: Evidence for Multiple Substrate Binding Modes
Biochemistry, 42, 2003
1NYK
DownloadVisualize
BU of 1nyk by Molmil
Crystal Structure of the Rieske protein from Thermus thermophilus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, MAGNESIUM ION, Rieske iron-sulfur protein
Authors:Hunsicker-Wang, L.M, Heine, A, Chen, Y, Luna, E.P, Todaro, T, Zhang, Y.M, Williams, P.A, McRee, D.E, Hirst, J, Stout, C.D, Fee, J.A.
Deposit date:2003-02-12
Release date:2003-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:High resolution structure of the soluble, respiratory-type Rieske protein from Thermus thermophilus: Analysis and Comparison
Biochemistry, 42, 2003
1NR6
DownloadVisualize
BU of 1nr6 by Molmil
MICROSOMAL CYTOCHROME P450 2C5/3LVDH COMPLEX WITH DICLOFENAC
Descriptor: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID, CYTOCHROME P450 2C5, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Wester, M.R, Johnson, E.F, Stout, C.D.
Deposit date:2003-01-23
Release date:2003-08-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Mammalian Cytochrome P450 2C5 Complexed with Diclofenac at 2.1 A Resolution: Evidence for an Induced Fit Model of Substrate Binding
Biochemistry, 42, 2003
1NMU
DownloadVisualize
BU of 1nmu by Molmil
MBP-L30
Descriptor: 60S ribosomal protein L30, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, maltose-binding periplasmic protein
Authors:Chao, J.A, Prasad, G.S, White, S.A, Stout, C.D, Williamson, J.R.
Deposit date:2003-01-10
Release date:2003-02-18
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Inherent Protein Structural Flexibility at the RNA-binding Interface of L30e
J.Mol.Biol., 326, 2003
1PNQ
DownloadVisualize
BU of 1pnq by Molmil
Crystal structure of R. rubrum transhydrogenase domain III bound to NADPH
Descriptor: NAD(P) transhydrogenase subunit beta, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Sundaresan, V, Yamaguchi, M, Chartron, J, Stout, C.D.
Deposit date:2003-06-12
Release date:2003-11-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational Change in the NADP(H) Binding Domain of Transhydrogenase Defines Four States
Biochemistry, 42, 2003
1PNO
DownloadVisualize
BU of 1pno by Molmil
Crystal structure of R. rubrum transhydrogenase domain III bound to NADP
Descriptor: NAD(P) transhydrogenase subunit beta, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Sundaresan, V, Yamaguchi, M, Chartron, J, Stout, C.D.
Deposit date:2003-06-12
Release date:2003-11-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational Change in the NADP(H) Binding Domain of Transhydrogenase Defines Four States
Biochemistry, 42, 2003
1PO5
DownloadVisualize
BU of 1po5 by Molmil
Structure of mammalian cytochrome P450 2B4
Descriptor: Cytochrome P450 2B4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Scott, E.E, He, Y.A, Wester, M.R, White, M.A, Chin, C.C, Halpert, J.R, Johnson, E.F, Stout, C.D.
Deposit date:2003-06-13
Release date:2003-10-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An open conformation of mammalian cytochrome P450 2B4 at 1.6 A resolution
Proc.Natl.Acad.Sci.USA, 100, 2003
1PQ2
DownloadVisualize
BU of 1pq2 by Molmil
Crystal Structure of Human Drug Metabolizing Cytochrome P450 2C8
Descriptor: Cytochrome P450 2C8, PALMITIC ACID, PHOSPHATE ION, ...
Authors:Schoch, G.A, Yano, J.K, Wester, M.R, Griffin, K.J, Stout, C.D, Johnson, E.F.
Deposit date:2003-06-17
Release date:2004-01-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of human microsomal cytochrome P450 2C8. Evidence for a peripheral fatty acid binding site
J.Biol.Chem., 279, 2004
1R0Q
DownloadVisualize
BU of 1r0q by Molmil
Characterization of the conversion of the malformed, recombinant cytochrome rc552 to a 2-formyl-4-vinyl (Spirographis) heme
Descriptor: 2-FORMYL-PROTOPORPHRYN IX, Cytochrome c-552
Authors:Fee, J.A, Todaro, T.R, Luna, E, Sanders, D, Hunsicker-Wang, L.M, Patel, K.M, Bren, K.L, Gomez-Moran, E, Hill, M.G, Ai, J, Loehr, T.M, Oertling, W.A, Williams, P.A, Stout, C.D, McRee, D, Pastuszyn, A.
Deposit date:2003-09-22
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Cytochrome rC552, formed during expression of the truncated, Thermus thermophilus cytochrome c552 gene in the cytoplasm of Escherichia coli, reacts spontaneously to form protein-bound 2-formyl-4-vinyl (Spirographis) heme.
Biochemistry, 43, 2004
1QYZ
DownloadVisualize
BU of 1qyz by Molmil
Characterization of the malformed, recombinant cytochrome rC552
Descriptor: 2-ACETYL-PROTOPORPHYRIN IX, Cytochrome c-552
Authors:Fee, J.A, Todaro, T.R, Luna, E, Sanders, D, Hunsicker-Wang, L.M, Patel, K.M, Bren, K.L, Gomez-Moran, E, Hill, M.G, Ai, J, Loehr, T.M, Oertling, W.A, Williams, P.A, Stout, C.D, McRee, D, Pastuszyn, A.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Cytochrome rC552, formed during expression of the truncated, Thermus thermophilus cytochrome c552 gene in the cytoplasm of Escherichia coli, reacts spontaneously to form protein-bound 2-formyl-4-vinyl (Spirographis) heme.
Biochemistry, 43, 2004
1R9O
DownloadVisualize
BU of 1r9o by Molmil
Crystal Structure of P4502C9 with Flurbiprofen bound
Descriptor: Cytochrome P450 2C9, FLURBIPROFEN, GLYCEROL, ...
Authors:Wester, M.R, Yano, J.K, Schoch, G.A, Griffin, K.J, Stout, C.D, Johnson, E.F.
Deposit date:2003-10-30
Release date:2004-06-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Structure of Human Cytochrome P450 2C9 Complexed with Flurbiprofen at 2.0 A Resolution
J.Biol.Chem., 279, 2004
1RF9
DownloadVisualize
BU of 1rf9 by Molmil
Crystal structure of cytochrome P450-cam with a fluorescent probe D-4-AD (Adamantane-1-carboxylic acid-5-dimethylamino-naphthalene-1-sulfonylamino-butyl-amide)
Descriptor: 1,2-ETHANEDIOL, ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-BUTYL-AMIDE, Cytochrome P450-cam, ...
Authors:Hays, A.-M.A, Dunn, A.R, Gray, H.B, Stout, C.D, Goodin, D.B.
Deposit date:2003-11-07
Release date:2004-11-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conformational States of Cytochrome P450cam Revealed by Trapping of synthetic Molecular Wires
J.Mol.Biol., 344, 2004
1RE9
DownloadVisualize
BU of 1re9 by Molmil
CRYSTAL STRUCTURE OF CYTOCHROME P450-CAM WITH A FLUORESCENT PROBE D-8-AD (ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE)
Descriptor: 1,2-ETHANEDIOL, ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE, Cytochrome P450-cam, ...
Authors:Hays, A.-M.A, Dunn, A.R, Gray, H.B, Stout, C.D, Goodin, D.B.
Deposit date:2003-11-06
Release date:2004-11-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Conformational states of cytochrome P450cam revealed by trapping of synthetic molecular wires.
J.Mol.Biol., 344, 2004
2FLA
DownloadVisualize
BU of 2fla by Molmil
Structure of thereduced HiPIP from thermochromatium tepidum at 0.95 angstrom resolution
Descriptor: GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ...
Authors:Hunsicker-Wang, L.M, Stout, C.D, Fee, J.A.
Deposit date:2006-01-05
Release date:2006-12-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Geometric factors determine, in part, the electronic state of the 4Fe-4S cluster of HiPIP: a geometric, crystallographic, and theoretical study.
To be Published
2HAH
DownloadVisualize
BU of 2hah by Molmil
The structure of FIV 12S protease in complex with TL-3
Descriptor: Protease, benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate
Authors:Heaslet, H, Lin, Y.C, Elder, J.H, Stout, C.D.
Deposit date:2006-06-12
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of an FIV/HIV chimeric protease complexed with the broad-based inhibitor, TL-3.
Retrovirology, 4, 2007
2GOY
DownloadVisualize
BU of 2goy by Molmil
Crystal structure of assimilatory adenosine 5'-phosphosulfate reductase with bound APS
Descriptor: ADENOSINE-5'-PHOSPHOSULFATE, IRON/SULFUR CLUSTER, adenosine phosphosulfate reductase
Authors:Chartron, J, Carroll, K.S, Shiau, C, Gao, H, Leary, J.A, Bertozzi, C.R, Stout, C.D.
Deposit date:2006-04-14
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Substrate Recognition, Protein Dynamics, and Iron-Sulfur Cluster in Pseudomonas aeruginosa Adenosine 5'-Phosphosulfate Reductase.
J.Mol.Biol., 364, 2006
2HB2
DownloadVisualize
BU of 2hb2 by Molmil
Structure of HIV protease 6X mutant in apo form
Descriptor: Protease
Authors:Heaslet, H, Tam, K, Elder, J.H, Stout, C.D.
Deposit date:2006-06-13
Release date:2007-06-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational flexibility in the flap domains of ligand-free HIV protease.
Acta Crystallogr.,Sect.D, 63, 2007
2HC0
DownloadVisualize
BU of 2hc0 by Molmil
Structure of HIV protease 6X mutant in complex with AB-2.
Descriptor: BROMIDE ION, Protease, [1-((1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL)-1H-1,2,3-TRIAZOL-4-YL]METHYL (1R,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YLCARBAMATE
Authors:Heaslet, H, Brik, A, Lin, Y.-C, Elder, J.H, Stout, C.D.
Deposit date:2006-06-14
Release date:2007-06-26
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of HIV Protease 6X Mutant in complex with AB-2
To be Published
2HB4
DownloadVisualize
BU of 2hb4 by Molmil
Structure of HIV Protease NL4-3 in an Unliganded State
Descriptor: MAGNESIUM ION, Protease, R-1,2-PROPANEDIOL
Authors:Heaslet, H, Tam, K, Elder, J.H, Stout, C.D.
Deposit date:2006-06-13
Release date:2007-06-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Conformational flexibility in the flap domains of ligand-free HIV protease.
Acta Crystallogr.,Sect.D, 63, 2007
2HI4
DownloadVisualize
BU of 2hi4 by Molmil
Crystal Structure of Human Microsomal P450 1A2 in complex with alpha-naphthoflavone
Descriptor: 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE, Cytochrome P450 1A2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sansen, S, Yano, J.K, Reynald, R.L, Schoch, G.S, Stout, C.D, Johnson, E.F.
Deposit date:2006-06-29
Release date:2007-02-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Adaptations for the oxidation of polycyclic aromatic hydrocarbons exhibited by the structure of human P450 1A2.
J.Biol.Chem., 282, 2007
4EJK
DownloadVisualize
BU of 4ejk by Molmil
HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment 1F1-N in the outside/top of flap
Descriptor: INDOLYLPROPIONIC ACID, Protease, pepstatin
Authors:Tiefenbrunn, T, Stout, C.D.
Deposit date:2012-04-06
Release date:2013-05-01
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.794 Å)
Cite:Small molecule regulation of protein conformation by binding in the Flap of HIV protease.
Acs Chem.Biol., 8, 2013
4EJD
DownloadVisualize
BU of 4ejd by Molmil
HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment 1F1 in the outside/top of flap
Descriptor: 1H-indole-6-carboxylic acid, BETA-MERCAPTOETHANOL, GLYCEROL, ...
Authors:Tiefenbrunn, T, Stout, C.D.
Deposit date:2012-04-06
Release date:2013-05-01
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (1.103 Å)
Cite:Small molecule regulation of protein conformation by binding in the Flap of HIV protease.
Acs Chem.Biol., 8, 2013
4G72
DownloadVisualize
BU of 4g72 by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase mutant V236M from Thermus thermophilus
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
Authors:Li, Y, Chen, Y, Stout, C.D.
Deposit date:2012-07-19
Release date:2013-07-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Structure of Recombinant Cytochrome ba3 Oxidase mutant V236M from Thermus thermophilus
To be Published
4G7Q
DownloadVisualize
BU of 4g7q by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase mutant V236L from Thermus thermophilus
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
Authors:Li, Y, Chen, Y, Stout, C.D.
Deposit date:2012-07-20
Release date:2013-07-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Recombinant Cytochrome ba3 Oxidase mutant V236L from Thermus thermophilus
To be Published

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon