Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6XQI
DownloadVisualize
BU of 6xqi by Molmil
Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A
Descriptor: ASN-PRO-LEU-GLU-PHE-LEU, Protein Vpr, UV excision repair protein RAD23 homolog A, ...
Authors:Calero, G.C, Wu, Y, Weiss, S.C.
Deposit date:2020-07-09
Release date:2021-08-11
Last modified:2021-12-08
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A.
Nat Commun, 12, 2021
1QCK
DownloadVisualize
BU of 1qck by Molmil
SOLUTION STRUCTURE OF HUMAN BARRIER-TO-AUTOINTEGRATION FACTOR BAF, NMR, REGULARIZED MEAN STRUCTURE PLUS 20 INDIVIDUAL SIMULATED ANNEALING STRUCTURES
Descriptor: PROTEIN (BARRIER-TO-AUTOINTEGRATION FACTOR)
Authors:Clore, G.M.
Deposit date:1999-05-06
Release date:1999-06-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:IMPROVING THE PACKING AND ACCURACY OF NMR STRUCTURES WITH A PSEUDOPOTENTIAL FOR THE RADIUS OF GYRATION
J.Am.Chem.Soc., 121, 1999
1PGX
DownloadVisualize
BU of 1pgx by Molmil
THE 1.66 ANGSTROMS X-RAY STRUCTURE OF THE B2 IMMUNOGLOBULIN-BINDING DOMAIN OF STREPTOCOCCAL PROTEIN G AND COMPARISON TO THE NMR STRUCTURE OF THE B1 DOMAIN
Descriptor: PROTEIN G
Authors:Whitlow, M, Achari, A, Howard, A.J.
Deposit date:1992-04-03
Release date:1992-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:1.67-A X-ray structure of the B2 immunoglobulin-binding domain of streptococcal protein G and comparison to the NMR structure of the B1 domain.
Biochemistry, 31, 1992
4B3N
DownloadVisualize
BU of 4b3n by Molmil
Crystal structure of rhesus TRIM5alpha PRY/SPRY domain
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MALTOSE-BINDING PERIPLASMIC PROTEIN, TRIPARTITE MOTIF-CONTAINING PROTEIN 5, ...
Authors:Yang, H, Ji, X, Zhao, Q, Xiong, Y.
Deposit date:2012-07-25
Release date:2012-10-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insight Into HIV-1 Capsid Recognition by Rhesus Trim5Alpha
Proc.Natl.Acad.Sci.USA, 109, 2012
2SXL
DownloadVisualize
BU of 2sxl by Molmil
SEX-LETHAL RBD1, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: SEX-LETHAL PROTEIN
Authors:Inoue, M, Muto, Y, Sakamoto, H, Kigawa, T, Takio, K, Shimura, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-07-16
Release date:1998-07-22
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal.
J.Mol.Biol., 272, 1997
5JK7
DownloadVisualize
BU of 5jk7 by Molmil
The X-ray structure of the DDB1-DCAF1-Vpr-UNG2 complex
Descriptor: DNA damage-binding protein 1, Protein VPRBP, Protein Vpr, ...
Authors:Calero, G, Ahn, J, Wu, Y.
Deposit date:2016-04-26
Release date:2016-10-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction.
Nat.Struct.Mol.Biol., 23, 2016
5UP4
DownloadVisualize
BU of 5up4 by Molmil
Structure of the HIV-1 Capsid Protein and spacer peptide 1 by Cryo-EM
Descriptor: HIV-1 Capsid Protein and spacer peptide 1
Authors:Perilla, J.R, Schirra, R, Zhang, P, Schulten, K.
Deposit date:2017-02-01
Release date:2017-12-06
Last modified:2017-12-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Quenching protein dynamics interferes with HIV capsid maturation.
Nat Commun, 8, 2017
3EST
DownloadVisualize
BU of 3est by Molmil
STRUCTURE OF NATIVE PORCINE PANCREATIC ELASTASE AT 1.65 ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, PORCINE PANCREATIC ELASTASE, SULFATE ION
Authors:Meyer, E.F, Cole, G, Radhakrishnan, R, Epp, O.
Deposit date:1987-09-17
Release date:1988-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of native porcine pancreatic elastase at 1.65 A resolutions.
Acta Crystallogr.,Sect.B, 44, 1988
5UPW
DownloadVisualize
BU of 5upw by Molmil
CryoEM Structure Refinement by Integrating NMR Chemical Shifts with Molecular Dynamics Simulations
Descriptor: Gag polyprotein
Authors:Perilla, J.R.
Deposit date:2017-02-04
Release date:2017-03-01
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (5 Å)
Cite:CryoEM Structure Refinement by Integrating NMR Chemical Shifts with Molecular Dynamics Simulations.
J Phys Chem B, 121, 2017
1PGA
DownloadVisualize
BU of 1pga by Molmil
TWO CRYSTAL STRUCTURES OF THE B1 IMMUNOGLOBULIN-BINDING DOMAIN OF STREPTOCOCCAL PROTEIN G AND COMPARISON WITH NMR
Descriptor: PROTEIN G
Authors:Gallagher, T, Alexander, P, Bryan, P, Gilliland, G.L.
Deposit date:1993-11-23
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR.
Biochemistry, 33, 1994
1PGB
DownloadVisualize
BU of 1pgb by Molmil
TWO CRYSTAL STRUCTURES OF THE B1 IMMUNOGLOBULIN-BINDING DOMAIN OF STREPTOCCOCAL PROTEIN G AND COMPARISON WITH NMR
Descriptor: PROTEIN G
Authors:Gallagher, T, Alexander, P, Bryan, P, Gilliland, G.L.
Deposit date:1993-11-23
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR.
Biochemistry, 33, 1994
1NAP
DownloadVisualize
BU of 1nap by Molmil
THE CRYSTAL STRUCTURE OF RECOMBINANT HUMAN NEUTROPHIL-ACTIVATING PEPTIDE-2 (M6L) AT 1.9-ANGSTROMS RESOLUTION
Descriptor: NEUTROPHIL ACTIVATING PEPTIDE-2
Authors:Malkowski, M.G, Edwards, B.F.P.
Deposit date:1994-12-19
Release date:1995-12-19
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of recombinant human neutrophil-activating peptide-2 (M6L) at 1.9-A resolution.
J.Biol.Chem., 270, 1995
1IGC
DownloadVisualize
BU of 1igc by Molmil
IGG1 FAB FRAGMENT (MOPC21) COMPLEX WITH DOMAIN III OF PROTEIN G FROM STREPTOCOCCUS
Descriptor: IGG1-KAPPA MOPC21 FAB (HEAVY CHAIN), IGG1-KAPPA MOPC21 FAB (LIGHT CHAIN), STREPTOCOCCAL PROTEIN G (DOMAIN III)
Authors:Derrick, J.P, Wigley, D.B.
Deposit date:1994-08-05
Release date:1995-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The third IgG-binding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab.
J.Mol.Biol., 243, 1994
1IGD
DownloadVisualize
BU of 1igd by Molmil
THE THIRD IGG-BINDING DOMAIN FROM STREPTOCOCCAL PROTEIN G: AN ANALYSIS BY X-RAY CRYSTALLOGRAPHY OF THE STRUCTURE ALONE AND IN A COMPLEX WITH FAB
Descriptor: PROTEIN G
Authors:Derrick, J.P, Wigley, D.B.
Deposit date:1994-08-05
Release date:1994-11-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The third IgG-binding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab.
J.Mol.Biol., 243, 1994
1J4V
DownloadVisualize
BU of 1j4v by Molmil
CYANOVIRIN-N
Descriptor: CYANOVIRIN-N
Authors:Clore, G.M, Bewley, C.A.
Deposit date:2001-11-21
Release date:2002-03-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Using conjoined rigid body/torsion angle simulated annealing to determine the relative orientation of covalently linked protein domains from dipolar couplings.
J.Magn.Reson., 154, 2002
3EZM
DownloadVisualize
BU of 3ezm by Molmil
CYANOVIRIN-N
Descriptor: PROTEIN (CYANOVIRIN-N)
Authors:Yang, F, Wlodawer, A.
Deposit date:1998-12-15
Release date:1998-12-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping.
J.Mol.Biol., 288, 1999
3BVB
DownloadVisualize
BU of 3bvb by Molmil
Cystal structure of HIV-1 Active Site Mutant D25N and inhibitor Darunavir
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, CHLORIDE ION, GLYCEROL, ...
Authors:Liu, F, Weber, I.T.
Deposit date:2008-01-05
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Effect of the Active Site D25N Mutation on the Structure, Stability, and Ligand Binding of the Mature HIV-1 Protease.
J.Biol.Chem., 283, 2008
3BVA
DownloadVisualize
BU of 3bva by Molmil
Cystal structure of HIV-1 Active Site Mutant D25N and p2-NC analog inhibitor
Descriptor: GLYCEROL, N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide, Protease (Retropepsin)
Authors:Liu, F, Weber, I.T.
Deposit date:2008-01-05
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of the Active Site D25N Mutation on the Structure, Stability, and Ligand Binding of the Mature HIV-1 Protease.
J.Biol.Chem., 283, 2008
3J3Y
DownloadVisualize
BU of 3j3y by Molmil
Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)
Descriptor: capsid protein
Authors:Perilla, J.R, Zhao, G, Zhang, P, Schulten, K.J.
Deposit date:2013-05-06
Release date:2013-05-29
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J4F
DownloadVisualize
BU of 3j4f by Molmil
Structure of HIV-1 capsid protein by cryo-EM
Descriptor: capsid protein
Authors:Zhao, G, Perilla, J.R, Meng, X, Schulten, K, Zhang, P.
Deposit date:2013-07-11
Release date:2013-07-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J3Q
DownloadVisualize
BU of 3j3q by Molmil
Atomic-level structure of the entire HIV-1 capsid
Descriptor: capsid protein
Authors:Perilla, J.R, Zhao, G, Zhang, P, Schulten, K.J.
Deposit date:2013-04-12
Release date:2013-05-29
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
1TWO
DownloadVisualize
BU of 1two by Molmil
NMR structure of the pheromone binding protein from Antheraea polyphemus at acidic pH
Descriptor: Pheromone-binding protein
Authors:Mohanty, S, Zubkov, S.
Deposit date:2004-07-01
Release date:2005-10-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural Consequences of the pH-induced Conformational Switch in A.polyphemus Pheromone-binding Protein: Mechanisms of Ligand Release
J.Mol.Biol., 354, 2005
2KLM
DownloadVisualize
BU of 2klm by Molmil
Solution Structure of L11 with SAXS and RDC
Descriptor: 50S ribosomal protein L11
Authors:Wang, J, Zuo, X, Yu, P, Schwieters, C.D, Wang, Y.
Deposit date:2009-07-06
Release date:2009-10-06
Last modified:2022-03-16
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Determination of multicomponent protein structures in solution using global orientation and shape restraints.
J.Am.Chem.Soc., 131, 2009
1IOB
DownloadVisualize
BU of 1iob by Molmil
INTERLEUKIN-1 BETA FROM JOINT X-RAY AND NMR REFINEMENT
Descriptor: INTERLEUKIN-1 BETA
Authors:Shaanan, B, Clore, G.M.
Deposit date:1996-03-14
Release date:1996-08-17
Last modified:2024-05-01
Method:SOLUTION NMR (2 Å), X-RAY DIFFRACTION
Cite:Combining experimental information from crystal and solution studies: joint X-ray and NMR refinement.
Science, 257, 1992
1CQ4
DownloadVisualize
BU of 1cq4 by Molmil
CI2 MUTANT WITH TETRAGLUTAMINE (MGQQQQGM) REPLACING MET59
Descriptor: PROTEIN (SERINE PROTEINASE INHIBITOR 2), SULFATE ION
Authors:Chen, Y.W, Stott, K.R.
Deposit date:1998-11-17
Release date:1998-11-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a dimeric chymotrypsin inhibitor 2 mutant containing an inserted glutamine repeat.
Proc.Natl.Acad.Sci.USA, 96, 1999

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon