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8UUO
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BU of 8uuo by Molmil
Prototypic SARS-CoV-2 spike (containing V417) in the open conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, alpha-D-mannopyranose, ...
Authors:Geng, Q, Liu, B, Li, F.
Deposit date:2023-11-01
Release date:2023-11-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Lys417 acts as a molecular switch that regulates the conformation of SARS-CoV-2 spike protein.
Elife, 12, 2023
8UUM
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BU of 8uum by Molmil
Prototypic SARS-CoV-2 spike (containing K417) in the open conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, alpha-D-mannopyranose, ...
Authors:Geng, Q, Liu, B, Li, F.
Deposit date:2023-11-01
Release date:2023-11-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Lys417 acts as a molecular switch that regulates the conformation of SARS-CoV-2 spike protein.
Elife, 12, 2023
8UUL
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BU of 8uul by Molmil
Prototypic SARS-CoV-2 spike (containing K417) in the closed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Geng, Q, Liu, B, Li, F.
Deposit date:2023-11-01
Release date:2023-11-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Lys417 acts as a molecular switch that regulates the conformation of SARS-CoV-2 spike protein.
Elife, 12, 2023
5L16
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BU of 5l16 by Molmil
Crystal Structure of N-terminus truncated selenophosphate synthetase from Leishmania major
Descriptor: Putative selenophosphate synthetase, SULFATE ION
Authors:Faim, L.M, Silva, I.R, Pereira, H.M, Dias, M.B, Silva, M.T.A, Brandao-Neto, J, Thiemann, O.H.
Deposit date:2016-07-28
Release date:2017-08-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.882 Å)
Cite:Trypanosomatid selenophosphate synthetase structure, function and interaction with selenocysteine lyase.
Plos Negl Trop Dis, 14, 2020
5M6Q
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BU of 5m6q by Molmil
Crystal Structure of Kutzneria albida transglutaminase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, TETRAETHYLENE GLYCOL, ...
Authors:Steffen, W, Benz, J, Rudolph, M.G.
Deposit date:2016-10-25
Release date:2017-07-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Discovery of a microbial transglutaminase enabling highly site-specific labeling of proteins.
J. Biol. Chem., 292, 2017
4U0V
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BU of 4u0v by Molmil
Crystal structure of YvoA from Bacillus subtilis in complex with glucosamine-6-phosphate
Descriptor: 1,2-ETHANEDIOL, 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, HTH-type transcriptional repressor YvoA
Authors:Fillenberg, S.B, Muller, Y.A.
Deposit date:2014-07-14
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.051 Å)
Cite:Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR.
Nucleic Acids Res., 43, 2015
4U0W
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BU of 4u0w by Molmil
Crystal structure of YvoA from Bacillus subtilis in complex with N-acetylglucosamine-6-phosphate
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLYCEROL, ...
Authors:Fillenberg, S.B, Muller, Y.A.
Deposit date:2014-07-14
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR.
Nucleic Acids Res., 43, 2015
4U0Y
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BU of 4u0y by Molmil
Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA
Descriptor: CHLORIDE ION, DNA (5'-D(P*GP*TP*GP*GP*TP*CP*TP*AP*GP*AP*CP*CP*AP*CP*T)-3'), HTH-type transcriptional repressor YvoA
Authors:Fillenberg, S.B, Muller, Y.A.
Deposit date:2014-07-14
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR.
Nucleic Acids Res., 43, 2015
5MQQ
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BU of 5mqq by Molmil
Transcriptional repressor AmtR of corynebacterium glutamicum
Descriptor: AmtR protein, SULFATE ION
Authors:Sevvana, M, Hasselt, K, Muller, Y.A.
Deposit date:2016-12-20
Release date:2017-03-15
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Similarities in the structure of the transcriptional repressor AmtR in two different space groups suggest a model for the interaction with GlnK.
Acta Crystallogr F Struct Biol Commun, 73, 2017
4UAI
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BU of 4uai by Molmil
Crystal structure of CXCL12 in complex with inhibitor
Descriptor: 1-phenyl-3-[4-(1H-tetrazol-5-yl)phenyl]urea, SULFATE ION, Stromal cell-derived factor 1
Authors:Smith, E.W, Chen, Y.
Deposit date:2014-08-09
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Analysis of a Novel Small Molecule Ligand Bound to the CXCL12 Chemokine.
J.Med.Chem., 57, 2014
7PNO
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BU of 7pno by Molmil
C terminal domain of Nipah Virus Phosphoprotein fused to the Ntail alpha more of the Nucleoprotein.
Descriptor: Phosphoprotein, alpha MoRE of Nipah virus Nucleoprotein tail
Authors:Bourhis, J.M, Yabukaski, F, Tarbouriech, N, Jamin, M.
Deposit date:2021-09-07
Release date:2022-04-20
Last modified:2022-04-27
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural Dynamics of the C-terminal X Domain of Nipah and Hendra Viruses Controls the Attachment to the C-terminal Tail of the Nucleocapsid Protein.
J.Mol.Biol., 434, 2022
7PON
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BU of 7pon by Molmil
C TERMINAL DOMAIN OF NIPAH VIRUS PHOSPHOPROTEIN
Descriptor: Phosphoprotein
Authors:Yabukarski, F, Tarbouriech, N, Jamin, M, Bourhis, J.M.
Deposit date:2021-09-09
Release date:2022-04-20
Last modified:2022-04-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Dynamics of the C-terminal X Domain of Nipah and Hendra Viruses Controls the Attachment to the C-terminal Tail of the Nucleocapsid Protein.
J.Mol.Biol., 434, 2022
6S8V
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BU of 6s8v by Molmil
Structure of the high affinity Anticalin P3D11 in complex with the human CD98 heavy chain ectodomain
Descriptor: 1,2-ETHANEDIOL, 4F2 cell-surface antigen heavy chain, Neutrophil gelatinase-associated lipocalin
Authors:Schiefner, A, Deuschle, F.-C, Skerra, A.
Deposit date:2019-07-10
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Development of a high affinity Anticalin®directed against human CD98hc for theranostic applications.
Theranostics, 10, 2020
6SAR
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BU of 6sar by Molmil
E coli BepA/YfgC
Descriptor: Beta-barrel assembly-enhancing protease, SULFATE ION, ZINC ION
Authors:Lovering, A.L, Cadby, I.T.
Deposit date:2019-07-17
Release date:2020-08-26
Last modified:2021-03-17
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure-Function Characterization of the Conserved Regulatory Mechanism of the Escherichia coli M48 Metalloprotease BepA.
J.Bacteriol., 203, 2020
3U7A
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BU of 3u7a by Molmil
AL-09 Y32F Y96F
Descriptor: Amyloidogenic immunoglobulin light chain protein AL-09 Y32F Y96F, variable domain
Authors:DiCostanzo, A.C, Thompson, J.R, Ramirez-Alvarado, M.
Deposit date:2011-10-13
Release date:2012-07-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tyrosine Residues mediate crucial interactions in amyloid formation for immunoglobulin light chains
To be Published
7RU7
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BU of 7ru7 by Molmil
Crystal structure of BtrK, a decarboxylase involved in butirosin biosynthesis
Descriptor: DI(HYDROXYETHYL)ETHER, L-glutamyl-[BtrI acyl-carrier protein] decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Arenas, L.A.R, Paiva, F.C.R, Huang, F, Leadlay, P, Dias, M.V.B.
Deposit date:2021-08-16
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of BtrK, a decarboxylase involved in the (S)-4-amino-2-hydroxybutyrate (AHBA) formation during butirosin biosynthesis
J.Mol.Struct., 1267, 2022
3U79
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BU of 3u79 by Molmil
AL-103 Y32F Y96F
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, Amyloidogenic immunoglobulin light chain protein AL-103 Y32F Y96F, ...
Authors:DiCostanzo, A.C, Thompson, J.R, Ramirez-Alvarado, M.
Deposit date:2011-10-13
Release date:2012-07-04
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Tyrosine Residues mediate crucial interactions in amyloid formation for immunoglobulin light chains
To be Published
6SUA
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BU of 6sua by Molmil
Structure of the high affinity engineered lipocalin C1B12 in complex with the mouse CD98 heavy chain ectodomain
Descriptor: 4F2 cell-surface antigen heavy chain, Neutrophil gelatinase-associated lipocalin, SULFATE ION
Authors:Schiefner, A, Deuschle, F.-C, Skerra, A.
Deposit date:2019-09-13
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Design of a surrogate Anticalin protein directed against CD98hc for preclinical studies in mice.
Protein Sci., 29, 2020
7SKC
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BU of 7skc by Molmil
Solution structure of spider toxin Ssp1a
Descriptor: Ssp1a toxin
Authors:Wilson, D.T, Daly, N.L, Dongol, Y, Lewis, R.J.
Deposit date:2021-10-20
Release date:2022-02-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Voltage-Gated Sodium Channel Modulation by a New Spider Toxin Ssp1a Isolated From an Australian Theraphosid.
Front Pharmacol, 12, 2021
2YFE
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BU of 2yfe by Molmil
Ligand binding domain of human PPAR gamma in complex with amorfrutin 1
Descriptor: Amorfrutin 1, PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
Authors:de Groot, J.C, Buessow, K.
Deposit date:2011-04-05
Release date:2012-04-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Amorfrutins are Potent Antidiabetic Dietary Natural Products
Proc.Natl.Acad.Sci.USA, 109, 2012
2YPI
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BU of 2ypi by Molmil
CRYSTALLOGRAPHIC ANALYSIS OF THE COMPLEX BETWEEN TRIOSEPHOSPHATE ISOMERASE AND 2-PHOSPHOGLYCOLATE AT 2.5-ANGSTROMS RESOLUTION. IMPLICATIONS FOR CATALYSIS
Descriptor: 2-PHOSPHOGLYCOLIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Lolis, E, Petsko, G.A.
Deposit date:1990-01-12
Release date:1991-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic analysis of the complex between triosephosphate isomerase and 2-phosphoglycolate at 2.5-A resolution: implications for catalysis.
Biochemistry, 29, 1990
7SOL
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BU of 7sol by Molmil
Crystal Structures of the bispecific ubiquitin/FAT10 activating enzyme, Uba6
Descriptor: ADENOSINE MONOPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, Ubiquitin, ...
Authors:Olsen, S.K, Gao, F, Lv, Z.
Deposit date:2021-10-31
Release date:2022-11-02
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (2.25000644 Å)
Cite:Crystal structures reveal catalytic and regulatory mechanisms of the dual-specificity ubiquitin/FAT10 E1 enzyme Uba6.
Nat Commun, 13, 2022
7MN3
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BU of 7mn3 by Molmil
Homotarsinin monomer - Htr-M
Descriptor: Homotarsinin
Authors:Verly, R.M.
Deposit date:2021-04-30
Release date:2021-07-14
Method:SOLUTION NMR
Cite:Structure and membrane interactions of the homodimeric antibiotic peptide homotarsinin.
Sci Rep, 7, 2017
4XQM
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BU of 4xqm by Molmil
Crystal structure of the MRH domain of Glucosidase II beta bound to mannose
Descriptor: Glucosidase 2 subunit beta, alpha-D-mannopyranose
Authors:Olson, L.J, Dahms, N.M, Kim, J.-J.P.
Deposit date:2015-01-19
Release date:2015-07-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.625 Å)
Cite:Crystal Structure and Functional Analyses of the Lectin Domain of Glucosidase II: Insights into Oligomannose Recognition.
Biochemistry, 54, 2015
4YNK
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BU of 4ynk by Molmil
Crystal structure of vitamin D receptor ligand binding domain complexed with a 19-norvitamin D compound
Descriptor: (1R,3R,7E,17beta)-17-{(5S)-5-hydroxy-5-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-1-yl]penta-1,3-diyn-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol, Coactivator peptide drip from cDNA FLJ50196, highly similar to Peroxisome proliferator-activated receptor-binding protein, ...
Authors:Watarai, Y, Ikura, T, Ito, N.
Deposit date:2015-03-10
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Synthesis, Biological Activities, and X-ray Crystal Structural Analysis of 25-Hydroxy-25(or 26)-adamantyl-17-[20(22),23-diynyl]-21-norvitamin D Compounds
J.Med.Chem., 58, 2015

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