Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2BF1
DownloadVisualize
BU of 2bf1 by Molmil
Structure of an unliganded and fully-glycosylated SIV gp120 envelope glycoprotein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Chen, B, Vogan, E.M, Gong, H, Skehel, J.J, Wiley, D.C, Harrison, S.C.
登録日2004-12-02
公開日2005-02-17
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structure of an Unliganded Simian Immunodeficiency Virus Gp120 Core
Nature, 433, 2005
1ZA8
DownloadVisualize
BU of 1za8 by Molmil
NMR solution structure of a leaf-specific-expressed cyclotide vhl-1
分子名称: vhl-1
著者Chen, B, Colgrave, M.L, Daly, N.L, Rosengren, K.J, Gustafson, K.R, Craik, D.J.
登録日2005-04-05
公開日2005-04-12
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Isolation and characterization of novel cyclotides from Viola hederaceae: solution structure and anti-HIV activity of vhl-1, a leaf-specific expressed cyclotide.
J.Biol.Chem., 280, 2005
7UBY
DownloadVisualize
BU of 7uby by Molmil
Structure of the GTD domain of Clostridium difficile toxin A in complex with VHH AH3
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Glucosyltransferase TcdA, ...
著者Chen, B, Rongsheng, J, Kay, P.
登録日2022-03-15
公開日2022-11-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Neutralizing epitopes on Clostridioides difficile toxin A revealed by the structures of two camelid VHH antibodies.
Front Immunol, 13, 2022
7UBX
DownloadVisualize
BU of 7ubx by Molmil
Structure of a pore forming fragment of Clostridium difficile toxin A in complex with VHH AA6
分子名称: Nanobody VHH AA6, Toxin A
著者Chen, B, Rongsheng, J, Kay, P.
登録日2022-03-15
公開日2022-11-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Neutralizing epitopes on Clostridioides difficile toxin A revealed by the structures of two camelid VHH antibodies.
Front Immunol, 13, 2022
2L0K
DownloadVisualize
BU of 2l0k by Molmil
NMR solution structure of a transcription factor SpoIIID in complex with DNA
分子名称: Stage III sporulation protein D
著者Chen, B, Himes, P, Lu, Z, Liu, A, Yan, H, Kroos, L.
登録日2010-07-08
公開日2011-08-17
実験手法SOLUTION NMR
主引用文献Novel Mode of DNA Binding by Bacterial Transcription Factor SpoIIID
To be Published
3M0E
DownloadVisualize
BU of 3m0e by Molmil
Crystal structure of the ATP-bound state of Walker B mutant of NtrC1 ATPase domain
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Transcriptional regulator (NtrC family)
著者Chen, B, Sysoeva, T.A, Chowdhury, S, Rusu, M, Birmanns, S, Guo, L, Hanson, J, Yang, H, Nixon, B.T.
登録日2010-03-02
公開日2010-11-03
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Engagement of Arginine Finger to ATP Triggers Large Conformational Changes in NtrC1 AAA+ ATPase for Remodeling Bacterial RNA Polymerase.
Structure, 18, 2010
4MGT
DownloadVisualize
BU of 4mgt by Molmil
ALKBH2 R110A cross-linked to undamaged dsDNA
分子名称: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA1, DNA2, ...
著者Chen, B, Gan, J, Yang, C.G.
登録日2013-08-28
公開日2014-02-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin
Sci China Chem, 57, 2014
4MG2
DownloadVisualize
BU of 4mg2 by Molmil
ALKBH2 F102A cross-linked to undamaged dsDNA
分子名称: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA-1, DNA-2, ...
著者Chen, B, Gan, J, Yang, C.G.
登録日2013-08-28
公開日2014-02-26
最終更新日2014-06-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin
Sci China Chem, 57, 2014
5YHU
DownloadVisualize
BU of 5yhu by Molmil
Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor
分子名称: Myelin regulatory factor
著者Chen, B, Zhu, Y, Ye, S, Zhang, R.
登録日2017-09-30
公開日2018-05-23
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode.
J. Struct. Biol., 203, 2018
5ZHU
DownloadVisualize
BU of 5zhu by Molmil
Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor
分子名称: Myelin regulatory factor
著者Chen, B, Zhu, Y, Ye, S, Zhang, R.
登録日2018-03-13
公開日2018-05-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.202 Å)
主引用文献Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode.
J. Struct. Biol., 203, 2018
7D5C
DownloadVisualize
BU of 7d5c by Molmil
IleRS in complex with a tRNA site inhibitor
分子名称: (2E,4S,5S,6E,8E)-10-[(2S,3R,6S,8R,9S)-3-butyl-9-methyl-2-[(1E,3E)-3-methyl-5-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-3-(4-oxidanyl-4-oxidanylidene-butanoyl)oxy-1,7-dioxaspiro[5.5]undecan-8-yl]-4,8-dimethyl-5-oxidanyl-deca-2,6,8-trienoic acid, 1,2-ETHANEDIOL, Isoleucine--tRNA ligase, ...
著者Chen, B, Luo, S, Zhou, H.
登録日2020-09-25
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.895 Å)
主引用文献Inhibitory mechanism of reveromycin A at the tRNA binding site of a class I synthetase.
Nat Commun, 12, 2021
8YY8
DownloadVisualize
BU of 8yy8 by Molmil
Fzd7 -Gs complex
分子名称: Frizzled-7, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Chen, B, Xu, L, Han, G.W, Xu, F.
登録日2024-04-03
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献Cryo-EM structure of constitutively active human Frizzled 7 in complex with heterotrimeric G s .
Cell Res., 31, 2021
8HMP
DownloadVisualize
BU of 8hmp by Molmil
GPR52 with Gs and c17
分子名称: G-protein coupled receptor 52, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Chen, B, Xu, F.
登録日2022-12-05
公開日2023-06-21
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献Allosteric coupling between G-protein binding and extracellular ligand binding sites in GPR52 revealed by 19 F-NMR and cryo-electron microscopy.
MedComm (2020), 4, 2023
8HJ1
DownloadVisualize
BU of 8hj1 by Molmil
GPR21(wt) and Gs complex
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Chen, B, Lin, X, Xu, F.
登録日2022-11-22
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
8HIX
DownloadVisualize
BU of 8hix by Molmil
Cryo-EM structure of GPR21_m5_Gs
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Chen, B, Lin, X, Xu, F.
登録日2022-11-22
公開日2023-03-15
最終更新日2023-03-22
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
8HJ0
DownloadVisualize
BU of 8hj0 by Molmil
GPR21(m5) and G15 complex
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Chen, B, Lin, X.
登録日2022-11-22
公開日2023-03-15
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
8HJ2
DownloadVisualize
BU of 8hj2 by Molmil
GPR21 wt with G15 complex
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Chen, B, Lin, X, Xu, F.
登録日2022-11-22
公開日2023-03-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
4V94
DownloadVisualize
BU of 4v94 by Molmil
Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Leitner, A, Joachimiak, L.A, Bracher, A, Walzthoeni, T, Chen, B, Monkemeyer, L, Pechmann, S, Holmes, S, Cong, Y, Ma, B, Ludtke, S, Chiu, W, Hartl, F.U, Aebersold, R, Frydman, J.
登録日2012-01-11
公開日2014-07-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献The Molecular Architecture of the Eukaryotic Chaperonin TRiC/CCT.
Structure, 20, 2012
6UJV
DownloadVisualize
BU of 6ujv by Molmil
Model of the HIV-1 gp41 membrane-proximal external region, transmembrane domain and cytoplasmic tail (LLP2)
分子名称: Envelope glycoprotein GP41
著者Piai, A, Fu, Q, Cai, Y, Ghantous, F, Xiao, T, Shaik, M.M, Peng, H, Rits-Volloch, S, Liu, Z, Chen, W, Seaman, M.S, Chen, B, Chou, J.J.
登録日2019-10-03
公開日2020-05-13
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural basis of transmembrane coupling of the HIV-1 envelope glycoprotein.
Nat Commun, 11, 2020
8SYM
DownloadVisualize
BU of 8sym by Molmil
Human VPS29/VPS35L Complex (Locally refined map)
分子名称: VPS35 endosomal protein-sorting factor-like, Vacuolar protein sorting-associated protein 29
著者Chen, Z, Chen, B, Burstein, E, Han, Y.
登録日2023-05-25
公開日2023-11-01
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural organization of the retriever-CCC endosomal recycling complex.
Nat.Struct.Mol.Biol., 2023
8SYN
DownloadVisualize
BU of 8syn by Molmil
Human VPS35L/VPS29/VPS26C Complex
分子名称: VPS35 endosomal protein-sorting factor-like, Vacuolar protein sorting-associated protein 26C, Vacuolar protein sorting-associated protein 29
著者Chen, Z, Chen, B, Burstein, E, Han, Y.
登録日2023-05-25
公開日2023-11-01
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (2.94 Å)
主引用文献Structural organization of the retriever-CCC endosomal recycling complex.
Nat.Struct.Mol.Biol., 2023
8SYO
DownloadVisualize
BU of 8syo by Molmil
Human Retriever VPS35L/VPS29/VPS26C Complex (Composite Map)
分子名称: VPS35 endosomal protein-sorting factor-like, Vacuolar protein sorting-associated protein 26C, Vacuolar protein sorting-associated protein 29
著者Chen, Z, Chen, B, Burstein, E, Han, Y.
登録日2023-05-25
公開日2023-11-01
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (2.94 Å)
主引用文献Structural organization of the retriever-CCC endosomal recycling complex.
Nat.Struct.Mol.Biol., 2023
5JYN
DownloadVisualize
BU of 5jyn by Molmil
Structure of the transmembrane domain of HIV-1 gp41 in bicelle
分子名称: Envelope glycoprotein gp160
著者Dev, J, Fu, Q, Park, D, Chen, B, Chou, J.J.
登録日2016-05-14
公開日2016-06-29
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural basis for membrane anchoring of HIV-1 envelope spike.
Science, 353, 2016
8GJM
DownloadVisualize
BU of 8gjm by Molmil
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kwon, H.J, Zhang, J, Kosikova, M, Tang, W.C, Rodriguez, U.O, Peng, H.Q, Meseda, C.A, Pedro, C.L, Schmeisser, F, Lu, J.M, Zhou, B, Davis, C.T, Wentworth, D.E, Chen, W.H, Shriver, M.C, Pasetti, M.F, Weir, J.P, Chen, B, Xie, H.
登録日2023-03-16
公開日2023-04-05
最終更新日2023-04-19
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Distinct in vitro and in vivo neutralization profiles of monoclonal antibodies elicited by the receptor binding domain of the ancestral SARS-CoV-2.
J Med Virol, 95, 2023
8GJN
DownloadVisualize
BU of 8gjn by Molmil
17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 17B10 Fab, Light chain of 17B10 Fab, ...
著者Kwon, H.J, Zhang, J, Kosikova, M, Tang, W.C, Rodriguez, U.O, Peng, H.Q, Meseda, C.A, Pedro, C.L, Schmeisser, F, Lu, J.M, Zhou, B, Davis, C.T, Wentworth, D.E, Chen, W.H, Shriver, M.C, Pasetti, M.F, Weir, J.P, Chen, B, Xie, H.
登録日2023-03-16
公開日2023-04-05
最終更新日2023-04-19
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Distinct in vitro and in vivo neutralization profiles of monoclonal antibodies elicited by the receptor binding domain of the ancestral SARS-CoV-2.
J Med Virol, 95, 2023

218853

件を2024-04-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon