Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3K7A
DownloadVisualize
BU of 3k7a by Molmil
Crystal Structure of an RNA polymerase II-TFIIB complex
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Liu, X, Bushnell, D.A, Wang, D, Calero, G, Kornberg, R.D.
Deposit date:2009-10-12
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.
Science, 327, 2010
2R7G
DownloadVisualize
BU of 2r7g by Molmil
Structure of the retinoblastoma protein pocket domain in complex with adenovirus E1A CR1 domain
Descriptor: Early E1A 32 kDa protein, Retinoblastoma-associated protein, SULFATE ION
Authors:Liu, X, Marmorstein, R.
Deposit date:2007-09-07
Release date:2007-10-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.671 Å)
Cite:Structure of the retinoblastoma protein bound to adenovirus E1A reveals the molecular basis for viral oncoprotein inactivation of a tumor suppressor
Genes Dev., 21, 2007
6AAU
DownloadVisualize
BU of 6aau by Molmil
Solution Structure for m62A helix 45 in 3' end of 12S rRNA
Descriptor: RNA (24-mer)
Authors:Liu, X, Wu, P.
Deposit date:2018-07-19
Release date:2019-06-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function.
Nucleic Acids Res., 47, 2019
6AJK
DownloadVisualize
BU of 6ajk by Molmil
Crystal structure of TFB1M and h45 in homo sapiens
Descriptor: Dimethyladenosine transferase 1, mitochondrial, RNA (28-MER)
Authors:Liu, X, Shen, S, Wu, P, Li, F, Wang, C, Gong, Q, Wu, J, Zhang, H, Shi, Y.
Deposit date:2018-08-28
Release date:2019-06-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function.
Nucleic Acids Res., 47, 2019
6AAS
DownloadVisualize
BU of 6aas by Molmil
Solution Structure for helix 45 in 3' end of 12S rRNA
Descriptor: RNA (28-MER)
Authors:Liu, X, Wu, P.
Deposit date:2018-07-19
Release date:2019-06-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function.
Nucleic Acids Res., 47, 2019
6W9K
DownloadVisualize
BU of 6w9k by Molmil
Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with Prednisolone and PGC1a coregulator fragment
Descriptor: GLYCEROL, Glucocorticoid Receptor, Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, ...
Authors:Liu, X, Ortlund, E.A.
Deposit date:2020-03-23
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W9M
DownloadVisualize
BU of 6w9m by Molmil
Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with vamorolone and SHP coregulator fragment
Descriptor: GLYCEROL, Glucocorticoid Receptor, Nuclear receptor subfamily 0 group B member 2, ...
Authors:Liu, X, Ortlund, E.A.
Deposit date:2020-03-23
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W9L
DownloadVisualize
BU of 6w9l by Molmil
Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with deacetylated deflazacort and PGC1a coregulator fragment
Descriptor: (4aR,4bS,5S,6aS,6bS,9aR,10aS,10bS)-5-hydroxy-6b-(hydroxyacetyl)-4a,6a,8-trimethyl-4a,4b,5,6,6a,6b,9a,10,10a,10b,11,12-dodecahydro-2H-naphtho[2',1':4,5]indeno[1,2-d][1,3]oxazol-2-one, GLYCEROL, Glucocorticoid Receptor, ...
Authors:Liu, X, Ortlund, E.A.
Deposit date:2020-03-23
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment.
Proc.Natl.Acad.Sci.USA, 117, 2020
5GWM
DownloadVisualize
BU of 5gwm by Molmil
Solution structure of heterodimeric coiled-coil domain of Drosophila GABAB receptor 1 and 3
Descriptor: Metabotropic GABA-B receptor subtype 1, Metabotropic GABA-B receptor subtype 3, isoform A
Authors:Liu, X, Zhang, S, Zhang, C.X, Liu, J.
Deposit date:2016-09-12
Release date:2017-09-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of heterodimeric coiled-coil domain of Drosophila GABAB receptor 1 and 3
To Be Published
4YR8
DownloadVisualize
BU of 4yr8 by Molmil
Crystal structure of JNK in complex with a regulator protein
Descriptor: CHLORIDE ION, Dual specificity protein phosphatase 16, Mitogen-activated protein kinase 8
Authors:Liu, X, Wang, J, Wu, J.W, Wang, Z.X.
Deposit date:2015-03-14
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A conserved motif in JNK/p38-specific MAPK phosphatases as a determinant for JNK1 recognition and inactivation.
Nat Commun, 7, 2016
3RZD
DownloadVisualize
BU of 3rzd by Molmil
RNA Polymerase II Initiation Complex with a 5-nt RNA
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-11
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3RZO
DownloadVisualize
BU of 3rzo by Molmil
RNA Polymerase II Initiation Complex with a 4-nt RNA
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-12
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S1R
DownloadVisualize
BU of 3s1r by Molmil
RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with GTP
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-16
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S16
DownloadVisualize
BU of 3s16 by Molmil
RNA Polymerase II Initiation Complex with an 8-nt RNA
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-14
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.241 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S14
DownloadVisualize
BU of 3s14 by Molmil
RNA Polymerase II Initiation Complex with a 6-nt RNA
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-14
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S1N
DownloadVisualize
BU of 3s1n by Molmil
RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 2)
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*GP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-15
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S2D
DownloadVisualize
BU of 3s2d by Molmil
RNA Polymerase II Initiation Complex with a 5-nt RNA containing a 5Br-U
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*AP*CP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-16
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S1Q
DownloadVisualize
BU of 3s1q by Molmil
RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-16
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S15
DownloadVisualize
BU of 3s15 by Molmil
RNA Polymerase II Initiation Complex with a 7-nt RNA
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-14
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S2H
DownloadVisualize
BU of 3s2h by Molmil
RNA Polymerase II Initiation Complex with a 6-nt RNA containing a 2[prime]-iodo ATP
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-16
Release date:2011-08-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S17
DownloadVisualize
BU of 3s17 by Molmil
RNA Polymerase II Initiation Complex with a 9-nt RNA
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-14
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
3S1M
DownloadVisualize
BU of 3s1m by Molmil
RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 1)
Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*GP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
Authors:Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D.
Deposit date:2011-05-15
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:Initiation complex structure and promoter proofreading.
Science, 333, 2011
4HBL
DownloadVisualize
BU of 4hbl by Molmil
Crystal structure of AbfR of Staphylococcus epidermidis
Descriptor: Transcriptional regulator, MarR family
Authors:Liu, X, Sun, X, Gan, J, Lan, L, Yang, C.-G.
Deposit date:2012-09-28
Release date:2013-01-02
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Oxidation-sensing Regulator AbfR Regulates Oxidative Stress Responses, Bacterial Aggregation, and Biofilm Formation in Staphylococcus epidermidis.
J.Biol.Chem., 288, 2013
3BIY
DownloadVisualize
BU of 3biy by Molmil
Crystal structure of p300 histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA
Descriptor: BROMIDE ION, Histone acetyltransferase p300, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R,20R)-20-carbamoyl-3-hydroxy-2,2-dimethyl-4,8,14,22-tetraoxo-12-thia-5,9,15,21-tetraazatricos-1-yl dihydrogen diphosphate
Authors:Liu, X, Wang, L, Zhao, K, Thompson, P.R, Hwang, Y, Marmorstein, R, Cole, P.A.
Deposit date:2007-12-02
Release date:2008-02-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structural basis of protein acetylation by the p300/CBP transcriptional coactivator
Nature, 451, 2008
3C20
DownloadVisualize
BU of 3c20 by Molmil
Crystal Structure of Threonine-sensitive Aspartokinase from Methanococcus jannaschii with L-aspartate
Descriptor: ASPARTIC ACID, FORMIC ACID, Probable aspartokinase
Authors:Liu, X, Pavlovsky, A.G, Viola, R.E.
Deposit date:2008-01-24
Release date:2008-04-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structural Basis for Allosteric Inhibition of a Threonine-sensitive Aspartokinase.
J.Biol.Chem., 283, 2008

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon