Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5WQ2
DownloadVisualize
BU of 5wq2 by Molmil
Crystal structure of 3C protease from a mild Human enterovirus 71 in complex with rupintrivir
Descriptor: 3C protein, 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER, SULFATE ION
Authors:Li, B, Yuan, Z.
Deposit date:2016-11-22
Release date:2017-11-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Crystal structure of 3C protease from a mild Human enterovirus 71 in complex with rupintrivir
To Be Published
6III
DownloadVisualize
BU of 6iii by Molmil
Crystal structure of an uncharacterized protein
Descriptor: ADENOSINE MONOPHOSPHATE, IMIDODIPHOSPHORIC ACID, MAGNESIUM ION, ...
Authors:Li, B, Yuan, Z.
Deposit date:2018-10-06
Release date:2019-10-09
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.113 Å)
Cite:Crystal structure of an uncharacterized protein
To Be Published
6INY
DownloadVisualize
BU of 6iny by Molmil
Crystal structure of an uncharacterized protein
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, UPF0061 protein YdiU
Authors:Li, B, Yuan, Z.
Deposit date:2018-10-29
Release date:2020-01-01
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Crystal structure of an uncharacterized protein
To Be Published
6K20
DownloadVisualize
BU of 6k20 by Molmil
Structure of Apo YdiU
Descriptor: MAGNESIUM ION, Protein adenylyltransferase SelO
Authors:Li, B, Yang, Y, Ma, Y.
Deposit date:2019-05-13
Release date:2020-05-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structure of Apo-YdiU
To Be Published
7D3U
DownloadVisualize
BU of 7d3u by Molmil
Structure of Mrp complex from Dietzia sp. DQ12-45-1b
Descriptor: Cation antiporter, DODECYL-BETA-D-MALTOSIDE, Monovalent Na+/H+ antiporter subunit A, ...
Authors:Li, B, Zhang, K.D, Wu, X.L, Zhang, X.C.
Deposit date:2020-09-21
Release date:2020-12-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the Dietzia Mrp complex reveals molecular mechanism of this giant bacterial sodium proton pump.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LNA
DownloadVisualize
BU of 6lna by Molmil
YdiU complex with AMPNPP and Mn2+
Descriptor: CALCIUM ION, MANGANESE (II) ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Li, B, Yang, Y, Ma, Y.
Deposit date:2019-12-28
Release date:2020-12-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:The YdiU Domain Modulates Bacterial Stress Signaling through Mn 2+ -Dependent UMPylation.
Cell Rep, 32, 2020
5HKP
DownloadVisualize
BU of 5hkp by Molmil
Crystal structure of mouse Tankyrase/human TRF1 complex
Descriptor: Tankyrase-1, Telomeric repeat-binding factor 1
Authors:Wang, Z, Li, B, Rao, Z, Xu, W.
Deposit date:2016-01-14
Release date:2016-03-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a tankyrase 1-telomere repeat factor 1 complex.
Acta Crystallogr F Struct Biol Commun, 72, 2016
7TXO
DownloadVisualize
BU of 7txo by Molmil
Selenomethionine Labeled Structure of RexT
Descriptor: CHLORIDE ION, Transcriptional regulator
Authors:Bridwell-Rabb, J, Li, B.
Deposit date:2022-02-09
Release date:2022-03-23
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and mechanistic basis for redox sensing by the cyanobacterial transcription regulator RexT.
Commun Biol, 5, 2022
7TXM
DownloadVisualize
BU of 7txm by Molmil
Oxidized Structure of RexT
Descriptor: HYDROGEN PEROXIDE, Transcriptional regulator
Authors:Bridwell-Rabb, J, Li, B.
Deposit date:2022-02-09
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structural and mechanistic basis for redox sensing by the cyanobacterial transcription regulator RexT.
Commun Biol, 5, 2022
7TXN
DownloadVisualize
BU of 7txn by Molmil
Reduced Structure of RexT
Descriptor: CHLORIDE ION, GLYCEROL, Transcriptional regulator
Authors:Bridwell-Rabb, J, Li, B.
Deposit date:2022-02-09
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and mechanistic basis for redox sensing by the cyanobacterial transcription regulator RexT.
Commun Biol, 5, 2022
7M1N
DownloadVisualize
BU of 7m1n by Molmil
Wild-type Hydrogenobacter thermophilus ferredoxin 1
Descriptor: IRON/SULFUR CLUSTER, Putative ferredoxin
Authors:Steindel, P.S, Li, B, Elliott, S.J.
Deposit date:2021-03-13
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Maximizing (Electro)catalytic CO2 Reduction with a Ferredoxin-Based Reduction Potential Gradient
Acs Catalysis, 11, 2021
7M1O
DownloadVisualize
BU of 7m1o by Molmil
Hydrogenobacter thermophilus ferredoxin 1 S64A variant
Descriptor: IRON/SULFUR CLUSTER, Putative ferredoxin
Authors:Steindel, P.S, Li, B, Elliott, S.J.
Deposit date:2021-03-13
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98388708 Å)
Cite:Maximizing (Electro)catalytic CO2 Reduction with a Ferredoxin-Based Reduction Potential Gradient
Acs Catalysis, 11, 2021
4L7F
DownloadVisualize
BU of 4l7f by Molmil
Co-crystal Structure of JNK1 and AX13587
Descriptor: Mitogen-activated protein kinase 8, N-[1-(4-fluorophenyl)cyclopropyl]-4-[(trans-4-hydroxycyclohexyl)amino]imidazo[1,2-a]quinoxaline-8-carboxamide
Authors:Walter, R.L, Ranieri, G.M, Riggs, A.M, Weissig, H, Li, B, Shreder, K.R.
Deposit date:2013-06-13
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Hit-to-lead optimization and kinase selectivity of imidazo[1,2-a]quinoxalin-4-amine derived JNK1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
7XXH
DownloadVisualize
BU of 7xxh by Molmil
Cryo-EM structure of the purinergic receptor P2Y1R in complex with 2MeSADP and G11
Descriptor: 2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate), Guanine nucleotide-binding protein G(11) subunit alpha, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Tan, Q, Li, B, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-05-30
Release date:2023-06-07
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into signal transduction of the purinergic receptors P2Y1R and P2Y12R.
Protein Cell, 14, 2023
7XXI
DownloadVisualize
BU of 7xxi by Molmil
Cryo-EM structure of the purinergic receptor P2Y12R in complex with 2MeSADP and Gi
Descriptor: 2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Tan, Q, Li, B, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-05-30
Release date:2023-06-07
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into signal transduction of the purinergic receptors P2Y1R and P2Y12R.
Protein Cell, 14, 2023
7DA7
DownloadVisualize
BU of 7da7 by Molmil
Mouse Toll-like receptor 3 ectodomain in complex with lncRNA Rmrp in elongated form
Descriptor: RNA component of mitochondrial RNAase P (Rmrp), RNase MRP RNA, Toll-like receptor 3
Authors:Li, B, Cao, X.
Deposit date:2020-10-15
Release date:2021-10-20
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Endosomal lncRNA Rmrp is required for TLR3 innate sensing by engaging TLR3 dimerization
To Be Published
7DAS
DownloadVisualize
BU of 7das by Molmil
Mouse Toll-like receptor 3 ectodomain in complex with lncRNA Rmrp in lapped form
Descriptor: RNA component of mitochondrial RNAase P (Rmrp), RNase MRP RNA, Toll-like receptor 3
Authors:Li, B, Cao, X.
Deposit date:2020-10-18
Release date:2021-10-20
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Endosomal lncRNA Rmrp is required for TLR3 innate sensing by engaging TLR3 dimerization
To Be Published
3KUZ
DownloadVisualize
BU of 3kuz by Molmil
Crystal structure of the ubiquitin like domain of PLXNC1
Descriptor: Plexin-C1, UNKNOWN ATOM OR ION
Authors:Wang, H, Li, B, Tempel, W, Tong, Y, Guan, X, Zhong, N, Crombet, L, MacKenzie, F, Buck, M, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2009-11-28
Release date:2009-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the ubiquitin like domain of PLXNC1
to be published
8CJ3
DownloadVisualize
BU of 8cj3 by Molmil
Urea-based foldamer inhibitor c3u_7 chimera in complex with ASF1 histone chaperone
Descriptor: Histone chaperone ASF1A, c3u_7 chimera inhibitor of histone chaperone ASF1
Authors:Perrin, M.E, Li, B, Mbianda, J, Ropars, V, Legrand, P, Douat, C, Ochsenbein, F, Guichard, G.
Deposit date:2023-02-11
Release date:2023-07-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Unexpected binding modes of inhibitors to the histone chaperone ASF1 revealed by a foldamer scanning approach.
Chem.Commun.(Camb.), 59, 2023
8CJ1
DownloadVisualize
BU of 8cj1 by Molmil
Urea-based foldamer inhibitor c3u_3 chimera in complex with ASF1 histone chaperone
Descriptor: Histone chaperone ASF1A, c3u_3 chimera inhibitor of histone chaperone ASF1
Authors:Perrin, M.E, Li, B, Mbianda, J, Ropars, V, Legrand, P, Douat, C, Ochsenbein, F, Guichard, G.
Deposit date:2023-02-11
Release date:2023-07-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.564 Å)
Cite:Unexpected binding modes of inhibitors to the histone chaperone ASF1 revealed by a foldamer scanning approach.
Chem.Commun.(Camb.), 59, 2023
8CJ2
DownloadVisualize
BU of 8cj2 by Molmil
Urea-based foldamer inhibitor c3u_5 chimera in complex with ASF1 histone chaperone
Descriptor: GLYCEROL, Histone chaperone ASF1A, SULFATE ION, ...
Authors:Perrin, M.E, Li, B, Mbianda, J, Ropars, V, Legrand, P, Douat, C, Ochsenbein, F, Guichard, G.
Deposit date:2023-02-11
Release date:2023-07-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.127 Å)
Cite:Unexpected binding modes of inhibitors to the histone chaperone ASF1 revealed by a foldamer scanning approach.
Chem.Commun.(Camb.), 59, 2023
6LK0
DownloadVisualize
BU of 6lk0 by Molmil
Crystal structure of human wild type TRIP13
Descriptor: Pachytene checkpoint protein 2 homolog
Authors:Wang, Y, Huang, J, Li, B, Xue, H, Tricot, G, Hu, L, Xu, Z, Sun, X, Chang, S, Gao, L, Tao, Y, Xu, H, Xie, Y, Xiao, W, Yu, D, Kong, Y, Chen, G, Sun, X, Lian, F, Zhang, N, Wu, X, Mao, Z, Zhan, F, Zhu, W, Shi, J.
Deposit date:2019-12-17
Release date:2020-01-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Small-Molecule Inhibitor Targeting TRIP13 Suppresses Multiple Myeloma Progression.
Cancer Res., 80, 2020
6GCX
DownloadVisualize
BU of 6gcx by Molmil
Focal Adhesion Kinase catalytic domain in complex with irreversible inhibitor
Descriptor: 2-[[2-[[4-[[[3,4-bis(oxidanylidene)-2-[2-(propanoylamino)ethylamino]cyclobuten-1-yl]amino]methyl]phenyl]amino]-5-chloranyl-pyrimidin-4-yl]amino]-~{N}-methyl-benzamide, Focal adhesion kinase 1, SULFATE ION
Authors:Yen-Pon, E, Li, B, Acebron-Garcia de Eulate, M, Tomkiewicz-Raulet, C, Dawson, J, Lietha, D, Frame, M.C, Coumoul, X, Garbay, C, Etheve-Quelquejeu, M, Chen, H.
Deposit date:2018-04-19
Release date:2019-05-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.553 Å)
Cite:Structure-Based Design, Synthesis, and Characterization of the First Irreversible Inhibitor of Focal Adhesion Kinase.
Acs Chem.Biol., 13, 2018
6GCR
DownloadVisualize
BU of 6gcr by Molmil
Focal Adhesion Kinase catalytic domain in complex with irreversible inhibitor
Descriptor: 2-[[2-[[4-[[[3,4-bis(oxidanylidene)-2-[2-(propanoylamino)ethylamino]cyclobuten-1-yl]amino]methyl]phenyl]amino]-5-chloranyl-pyrimidin-4-yl]amino]-~{N}-methyl-benzamide, Focal adhesion kinase 1
Authors:Yen-Pon, E, Li, B, Acebron-Garcia de Eulate, M, Tomkiewicz-Raulet, C, Dawson, J, Lietha, D, Frame, M.C, Coumoul, X, Garbay, C, Etheve-Quelquejeu, M, Chen, H.
Deposit date:2018-04-19
Release date:2019-05-01
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design, Synthesis, and Characterization of the First Irreversible Inhibitor of Focal Adhesion Kinase.
Acs Chem.Biol., 13, 2018
6GCW
DownloadVisualize
BU of 6gcw by Molmil
Focal Adhesion Kinase catalytic domain in complex with irreversible inhibitor
Descriptor: 2-[[5-chloranyl-2-[[4-[[[1-[2-(propanoylamino)ethyl]-1,2,3-triazol-4-yl]methylamino]methyl]phenyl]amino]pyrimidin-4-yl]amino]-~{N}-methyl-benzamide, Focal adhesion kinase 1, SULFATE ION
Authors:Yen-Pon, E, Li, B, Acebron-Garcia-de-Eulate, M, Tomkiewicz-Raulet, C, Dawson, J, Lietha, D, Frame, M.C, Coumoul, X, Garbay, C, Etheve-Quelquejeu, M, Chen, H.
Deposit date:2018-04-19
Release date:2019-05-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Based Design, Synthesis, and Characterization of the First Irreversible Inhibitor of Focal Adhesion Kinase.
Acs Chem.Biol., 13, 2018

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon