Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4DPH
DownloadVisualize
BU of 4dph by Molmil
Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with P65 and NADPH
Descriptor: 2,4-diamino-6-methyl-5-[3-(2,4,5-trichlorophenoxy)propyloxy]pyrimidine, BETA-MERCAPTOETHANOL, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
Authors:Yuthavong, Y, Vilaivan, T, Kamchonwongpaisan, S, Charman, S.A, McLennan, D.N, White, K.L, Vivas, L, Bongard, E, Chitnumsub, P, Tarnchompoo, B, Thongphanchang, C, Taweechai, S, Vanichtanakul, J, Arwon, U, Fantauzzi, P, Yuvaniyama, J, Charman, W.N, Matthews, D.
Deposit date:2012-02-13
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Malarial dihydrofolate reductase as a paradigm for drug development against a resistance-compromised target
Proc.Natl.Acad.Sci.USA, 109, 2012
4DP3
DownloadVisualize
BU of 4dp3 by Molmil
Quadruple mutant (N51I+C59R+S108N+I164L) plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with P218 and NADPH
Descriptor: 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid, Bifunctional dihydrofolate reductase-thymidylate synthase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Yuthavong, Y, Vilaivan, T, Kamchonwongpaisan, S, Charman, S.A, McLennan, D.N, White, K.L, Vivas, L, Bongard, E, Chitnumsub, P, Tarnchompoo, B, Thongphanchang, C, Taweechai, S, Vanichtanakul, J, Arwon, U, Fantauzzi, P, Yuvaniyama, J, Charman, W.N, Matthews, D.
Deposit date:2012-02-13
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Malarial dihydrofolate reductase as a paradigm for drug development against a resistance-compromised target
Proc.Natl.Acad.Sci.USA, 109, 2012
5K9A
DownloadVisualize
BU of 5k9a by Molmil
Sortase A from Corynebacterium diphtheriae
Descriptor: Putative fimbrial associated sortase-like protein, SULFATE ION
Authors:Osipiuk, J, Huang, I.-H, Ma, X, Ton-That, H, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-05-31
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking.
Proc.Natl.Acad.Sci.USA, 115, 2018
5UTT
DownloadVisualize
BU of 5utt by Molmil
SrtA sortase from Actinomyces oris
Descriptor: CHLORIDE ION, Sortase
Authors:Osipiuk, J, Ma, X, Ton-That, H, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-02-15
Release date:2017-03-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cell-to-cell interaction requires optimal positioning of a pilus tip adhesin modulated by gram-positive transpeptidase enzymes.
Proc.Natl.Acad.Sci.USA, 116, 2019
3IRU
DownloadVisualize
BU of 3iru by Molmil
Crystal structure of phoshonoacetaldehyde hydrolase like protein from Oleispira antarctica
Descriptor: SODIUM ION, phoshonoacetaldehyde hydrolase like protein
Authors:Chang, C, Evdokimova, E, Kagan, O, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-08-24
Release date:2009-09-01
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.
Nat Commun, 4, 2013
4W9T
DownloadVisualize
BU of 4w9t by Molmil
Crystal structure of HisAP from Streptomyces sp. Mg1
Descriptor: Phosphoribosyl isomerase A, SULFATE ION
Authors:MICHALSKA, K, VERDUZCO-CASTRO, E.A, ENDRES, M, BARONA-GOMEZ, F, JOACHIMIAK, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-08-27
Release date:2014-09-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Co-occurrence of analogous enzymes determines evolution of a novel ( beta alpha )8-isomerase sub-family after non-conserved mutations in flexible loop.
Biochem. J., 473, 2016
4I4K
DownloadVisualize
BU of 4i4k by Molmil
Streptomyces globisporus C-1027 9-membered enediyne conserved protein SgcE6
Descriptor: CITRIC ACID, GLYCEROL, PENTAETHYLENE GLYCOL, ...
Authors:Kim, Y, Bigelow, L, Clancy, S, Babnigg, J, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2012-11-27
Release date:2012-12-12
Last modified:2016-12-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of SgcJ, an NTF2-like superfamily protein involved in biosynthesis of the nine-membered enediyne antitumor antibiotic C-1027.
J Antibiot (Tokyo), 69, 2016
1BVE
DownloadVisualize
BU of 1bve by Molmil
HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES
Descriptor: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
Authors:Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
1BVG
DownloadVisualize
BU of 1bvg by Molmil
HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE
Descriptor: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
Authors:Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
4HGE
DownloadVisualize
BU of 4hge by Molmil
JAK2 kinase (JH1 domain) in complex with compound 8
Descriptor: N-[1-(3-chlorophenyl)-3-methyl-1H-pyrazol-5-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide, Tyrosine-protein kinase JAK2
Authors:Eigenbrot, C, Ultsch, M.
Deposit date:2012-10-08
Release date:2012-10-24
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of potent and selective pyrazolopyrimidine janus kinase 2 inhibitors.
J.Med.Chem., 55, 2012
7FD4
DownloadVisualize
BU of 7fd4 by Molmil
A complete three-dimensional structure of the Lon protease translocating a protein substrate (conformation 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Alpha-S1-casein, Lon protease, ...
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Pintilie, G, Zhang, K, Chang, C.
Deposit date:2021-07-16
Release date:2021-11-03
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Complete three-dimensional structures of the Lon protease translocating a protein substrate.
Sci Adv, 7, 2021
7FD5
DownloadVisualize
BU of 7fd5 by Molmil
A complete three-dimensional structure of the Lon protease translocating a protein substrate (conformation 2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Alpha-S1-casein, Lon protease, ...
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Pintilie, G, Zhang, K, Chang, C.
Deposit date:2021-07-16
Release date:2021-11-03
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Complete three-dimensional structures of the Lon protease translocating a protein substrate.
Sci Adv, 7, 2021
4HSS
DownloadVisualize
BU of 4hss by Molmil
Structure of the Full-Length Major Pilin SpaD from Corynebacterium diphtheriae
Descriptor: CALCIUM ION, Putative fimbrial subunit
Authors:Paterson, N.G, Kang, H.J, Baker, E.N.
Deposit date:2012-10-30
Release date:2013-11-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A slow-forming isopeptide bond in the structure of the major pilin SpaD from Corynebacterium diphtheriae has implications for pilus assembly.
Acta Crystallogr.,Sect.D, 70, 2014
6POO
DownloadVisualize
BU of 6poo by Molmil
Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin
Descriptor: BibA
Authors:Manne, K, Narayana, S.V.
Deposit date:2019-07-04
Release date:2020-08-12
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin.
Acta Crystallogr D Struct Biol, 76, 2020
5C00
DownloadVisualize
BU of 5c00 by Molmil
MdbA protein, a thiol-disulfide oxidoreductase from Corynebacterium diphtheriae
Descriptor: MdbA protein
Authors:OSIPIUK, J, REARDON-ROBINSON, M.E, TON-THAT, H, JOACHIMIAK, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-06-11
Release date:2015-07-15
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:A thiol-disulfide oxidoreductase of the Gram-positive pathogen Corynebacterium diphtheriae is essential for viability, pilus assembly, toxin production and virulence.
Mol.Microbiol., 98, 2015
1BLI
DownloadVisualize
BU of 1bli by Molmil
BACILLUS LICHENIFORMIS ALPHA-AMYLASE
Descriptor: ALPHA-AMYLASE, CALCIUM ION, SODIUM ION
Authors:Machius, M, Declerck, N, Huber, R, Wiegand, G.
Deposit date:1998-01-07
Release date:1999-03-23
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Activation of Bacillus licheniformis alpha-amylase through a disorder-->order transition of the substrate-binding site mediated by a calcium-sodium-calcium metal triad.
Structure, 6, 1998
2HVD
DownloadVisualize
BU of 2hvd by Molmil
Human nucleoside diphosphate kinase A complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase A
Authors:Giraud, M.-F, Georgescauld, F, Lascu, I, Dautant, A.
Deposit date:2006-07-28
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP
J.Bioenerg.Biomembr., 38, 2006
2HVE
DownloadVisualize
BU of 2hve by Molmil
S120G mutant of human nucleoside diphosphate kinase A complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase A
Authors:Giraud, M.-F, Georgescauld, F, Lascu, I, Dautant, A.
Deposit date:2006-07-28
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP
J.Bioenerg.Biomembr., 38, 2006
6RJK
DownloadVisualize
BU of 6rjk by Molmil
Structure of virulence factor SghA from Agrobacterium tumefaciens
Descriptor: Beta-glucosidase
Authors:Ye, F.Z, Wang, C, Chang, C.Q, Zhang, L.H, Gao, Y.G.
Deposit date:2019-04-27
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.922 Å)
Cite:Agrobacteria reprogram virulence gene expression by controlled release of host-conjugated signals.
Proc.Natl.Acad.Sci.USA, 116, 2019
6RK2
DownloadVisualize
BU of 6rk2 by Molmil
Complex structure of virulence factor SghA mutant with its substrate SAG
Descriptor: 2-(alpha-L-altropyranosyloxy)benzoic acid, Beta-glucosidase
Authors:Ye, F.Z, Wang, C, Chang, C.Q, Zhang, L.H, Gao, Y.G.
Deposit date:2019-04-30
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Agrobacteria reprogram virulence gene expression by controlled release of host-conjugated signals.
Proc.Natl.Acad.Sci.USA, 116, 2019
6RJM
DownloadVisualize
BU of 6rjm by Molmil
Complex structure of virulence factor SghA and its hydrolysis product glucose
Descriptor: Beta-glucosidase, alpha-D-glucopyranose
Authors:Ye, F.Z, Wang, C, Chang, C.Q, Zhang, L.H, Gao, Y.G.
Deposit date:2019-04-27
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.112 Å)
Cite:Agrobacteria reprogram virulence gene expression by controlled release of host-conjugated signals.
Proc.Natl.Acad.Sci.USA, 116, 2019
6RJO
DownloadVisualize
BU of 6rjo by Molmil
Complex structure of virulence factor SghA with its substrate analog salicin
Descriptor: 2-(hydroxymethyl)phenyl beta-D-glucopyranoside, Beta-glucosidase
Authors:Ye, F.Z, Wang, C, Chang, C.Q, Zhang, L.H, Gao, Y.G.
Deposit date:2019-04-28
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.804 Å)
Cite:Agrobacteria reprogram virulence gene expression by controlled release of host-conjugated signals.
Proc.Natl.Acad.Sci.USA, 116, 2019
7N3C
DownloadVisualize
BU of 7n3c by Molmil
Crystal Structure of Human Fab S24-202 in the complex with the N-terminal Domain of Nucleocapsid protein from SARS CoV-2
Descriptor: 1,2-ETHANEDIOL, IODIDE ION, Nucleoprotein, ...
Authors:Kim, Y, Maltseva, N, Tesar, C, Jedrzejczak, R, Dugan, H, Stamper, C, Wilson, P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-05-31
Release date:2021-07-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies.
Iscience, 27, 2024
7N3D
DownloadVisualize
BU of 7n3d by Molmil
Crystal Structure of Human Fab S24-1564 in the complex with the N-terminal Domain of Nucleocapsid protein from SARS CoV-2
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Nucleoprotein, ...
Authors:Kim, Y, Maltseva, N, Tesar, C, Jedrzejczak, R, Dugan, H, Stamper, C, Wilson, P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-05-31
Release date:2021-07-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies.
Iscience, 27, 2024
7STS
DownloadVisualize
BU of 7sts by Molmil
Crystal Structure of Human Fab S24-1379 in the Complex with the N-teminal Domain of Nucleocapsid Protein from SARS CoV-2
Descriptor: Fab S24-1379, heavy chain, light chain, ...
Authors:Kim, Y, Maltseva, N, Tesar, C, Jedrzejczak, R, Dugan, H, Stamper, C, Wilson, P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-11-15
Release date:2022-08-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies.
Iscience, 27, 2024

221371

PDB entries from 2024-06-19

PDB statisticsPDBj update infoContact PDBjnumon