Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2G0C
DownloadVisualize
BU of 2g0c by Molmil
Structure of the RNA binding domain (residues 404-479) of the Bacillus subtilis YxiN protein
Descriptor: ATP-dependent RNA helicase dbpA, SULFATE ION
Authors:McKay, D.B.
Deposit date:2006-02-11
Release date:2006-04-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold.
RNA, 12, 2006
8DKC
DownloadVisualize
BU of 8dkc by Molmil
P. gingivalis RNA Polymerase
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Liu, B, Bu, F.
Deposit date:2022-07-05
Release date:2023-06-21
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM Structure of Porphyromonas gingivalis RNA Polymerase.
J.Mol.Biol., 436, 2024
6J1O
DownloadVisualize
BU of 6j1o by Molmil
Crystal structure of a SAM-dependent methyltransferase LepI from Aspergillus flavus
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, O-methyltransferase lepI, S-ADENOSYLMETHIONINE
Authors:Qiu, S, Wei, C.
Deposit date:2018-12-28
Release date:2019-05-01
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Deciphering the regulatory and catalytic mechanisms of an unusual SAM-dependent enzyme.
Signal Transduct Target Ther, 4, 2019
6J46
DownloadVisualize
BU of 6j46 by Molmil
LepI-SAH complex structure
Descriptor: O-methyltransferase lepI, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Qiu, S, Wei, C.
Deposit date:2019-01-08
Release date:2019-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.621 Å)
Cite:Deciphering the regulatory and catalytic mechanisms of an unusual SAM-dependent enzyme.
Signal Transduct Target Ther, 4, 2019
6J24
DownloadVisualize
BU of 6j24 by Molmil
Crystal structure of a SAM-dependent methyltransferase LepI in complex with its substrate
Descriptor: (3~{S},4'~{R},4'~{a}~{S},6'~{R},8'~{a}~{S})-4',6'-dimethyl-5-phenyl-spiro[1~{H}-pyridine-3,5'-2,3,4,4~{a},6,8~{a}-hexahydro-1~{H}-naphthalene]-2,4-dione, O-methyltransferase, S-ADENOSYLMETHIONINE
Authors:Qiu, S, Wei, C.
Deposit date:2018-12-30
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.244 Å)
Cite:Deciphering the regulatory and catalytic mechanisms of an unusual SAM-dependent enzyme.
Signal Transduct Target Ther, 4, 2019
2MT9
DownloadVisualize
BU of 2mt9 by Molmil
Solution structure of holo_FldB
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin-2
Authors:Jin, C, Fu, W, Ye, Q.
Deposit date:2014-08-15
Release date:2016-03-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Long-chain flavodoxin FldB from Escherichia coli
J.Biomol.Nmr, 60, 2014
2MTB
DownloadVisualize
BU of 2mtb by Molmil
Solution structure of apo_FldB
Descriptor: Flavodoxin-2
Authors:Jin, C, Fu, W, Ye, Q.
Deposit date:2014-08-15
Release date:2016-03-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Long-chain flavodoxin FldB from Escherichia coli
J.Biomol.Nmr, 60, 2014
6OCG
DownloadVisualize
BU of 6ocg by Molmil
Crystal structure of VASH1-SVBP complex bound with EpoY
Descriptor: CHLORIDE ION, GLYCEROL, N-[(3R)-4-ethoxy-3-hydroxy-4-oxobutanoyl]-L-tyrosine, ...
Authors:Li, F, Luo, X, Yu, H.
Deposit date:2019-03-23
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.833 Å)
Cite:Structural basis of tubulin detyrosination by vasohibins.
Nat.Struct.Mol.Biol., 26, 2019
5ZVV
DownloadVisualize
BU of 5zvv by Molmil
Structure of SeMet-phAimR
Descriptor: AimR transcriptional regulator, GLYCEROL
Authors:Cheng, W, Dou, C.
Deposit date:2018-05-13
Release date:2018-09-05
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional insights into the regulation of the lysis-lysogeny decision in viral communities.
Nat Microbiol, 3, 2018
5ZW6
DownloadVisualize
BU of 5zw6 by Molmil
Structure of spAimR
Descriptor: AimR transcriptional regulator, GLY-MET-PRO-ARG-GLY-ALA
Authors:Cheng, W, Dou, C.
Deposit date:2018-05-14
Release date:2018-09-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and functional insights into the regulation of the lysis-lysogeny decision in viral communities.
Nat Microbiol, 3, 2018
5ZW5
DownloadVisualize
BU of 5zw5 by Molmil
Structure of SeMet-spAimR
Descriptor: AimR transcriptional regulator
Authors:Cheng, W, Dou, C.
Deposit date:2018-05-14
Release date:2018-08-29
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and functional insights into the regulation of the lysis-lysogeny decision in viral communities.
Nat Microbiol, 3, 2018
5ZVW
DownloadVisualize
BU of 5zvw by Molmil
Structure of phAimR-Ligand
Descriptor: AimR transcriptional regulator, SER-ALA-ILE-ARG-GLY-ALA
Authors:Cheng, W, Dou, C.
Deposit date:2018-05-13
Release date:2018-09-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.292 Å)
Cite:Structural and functional insights into the regulation of the lysis-lysogeny decision in viral communities.
Nat Microbiol, 3, 2018
5ZXL
DownloadVisualize
BU of 5zxl by Molmil
Structure of GldA from E.coli
Descriptor: CHLORIDE ION, GLYCEROL, Glycerol dehydrogenase, ...
Authors:Zhang, J, Lin, L.
Deposit date:2018-05-21
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.794 Å)
Cite:Structure of glycerol dehydrogenase (GldA) from Escherichia coli.
Acta Crystallogr F Struct Biol Commun, 75, 2019
2QU3
DownloadVisualize
BU of 2qu3 by Molmil
BACE1 with Compound 2
Descriptor: Beta-secretase 1, N-[amino(imino)methyl]-2-[2-(2-chlorophenyl)-4-(4-propoxyphenyl)-3-thienyl]acetamide
Authors:Chopra, R.
Deposit date:2007-08-03
Release date:2008-08-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Thiophene substituted acylguanidines as BACE1 inhibitors.
Bioorg.Med.Chem.Lett., 17, 2007
1PEF
DownloadVisualize
BU of 1pef by Molmil
PEPTIDE F (EQLLKALEFLLKELLEKL), AMPHIPHILIC OCTADECAPEPTIDE
Descriptor: PEPTIDE F (EQLLKALEFLLKELLEKL)
Authors:Garavito, R.M, Taylor, K, Yang, N.C.
Deposit date:1995-06-19
Release date:1996-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A novel, multilayer structure of a helical peptide.
Protein Sci., 5, 1996
2ZDZ
DownloadVisualize
BU of 2zdz by Molmil
X-ray structure of Bace-1 in complex with compound 3.b.10
Descriptor: Beta-secretase 1, N-carbamimidoyl-2-[2-(2-chlorophenyl)-5-[4-(4-ethanoylphenoxy)phenyl]pyrrol-1-yl]ethanamide
Authors:Chopra, R, Olland, A.
Deposit date:2007-12-04
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Acylguanidine inhibitors of beta-secretase: optimization of the pyrrole ring substituents extending into the S1 and S3 substrate binding pockets.
Bioorg.Med.Chem.Lett., 18, 2008
6O1S
DownloadVisualize
BU of 6o1s by Molmil
Structure of human plasma kallikrein protease domain with inhibitor
Descriptor: 1,2-ETHANEDIOL, N-[(6-amino-2,4-dimethylpyridin-3-yl)methyl]-1-({4-[(1H-pyrazol-1-yl)methyl]phenyl}methyl)-1H-pyrazole-4-carboxamide, PHOSPHATE ION, ...
Authors:Partridge, J.R, Choy, R.M.
Deposit date:2019-02-21
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of full-length plasma kallikrein bound to highly specific inhibitors describe a new mode of targeted inhibition.
J.Struct.Biol., 206, 2019
2ZE1
DownloadVisualize
BU of 2ze1 by Molmil
X-ray structure of Bace-1 in complex with compound 6g
Descriptor: 3-bromo-N-[4-[1-(2-carbamimidamido-2-oxo-ethyl)-5-phenyl-pyrrol-2-yl]phenyl]benzamide, Beta-secretase 1
Authors:Chopra, R, Olland, A.
Deposit date:2007-12-05
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Acylguanidine inhibitors of beta-secretase: optimization of the pyrrole ring substituents extending into the S1 and S3 substrate binding pockets.
Bioorg.Med.Chem.Lett., 18, 2008
5J1A
DownloadVisualize
BU of 5j1a by Molmil
Antigen presenting molecule
Descriptor: 3-[(8Z,11Z)-pentadeca-8,11-dien-1-yl]benzene-1,2-diol, Beta-2-microglobulin, T-cell surface glycoprotein CD1a
Authors:Yongqing, T, Rossjohn, J, Le Nours, J, Marquez, E, Winau, F.
Deposit date:2016-03-29
Release date:2016-08-03
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:CD1a on Langerhans cells controls inflammatory skin disease.
Nat. Immunol., 17, 2016
6CJ7
DownloadVisualize
BU of 6cj7 by Molmil
Crystal structure of Manduca sexta Serine protease inhibitor (Serpin)-12
Descriptor: Serpin-12
Authors:Gulati, M, Hu, Y, Peng, S, Pathak, P.K, Wang, Y, Deng, J, Jiang, H.
Deposit date:2018-02-26
Release date:2018-07-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Manduca sexta serpin-12 controls the prophenoloxidase activation system in larval hemolymph.
Insect Biochem. Mol. Biol., 99, 2018
7Y9G
DownloadVisualize
BU of 7y9g by Molmil
Crystal structure of diterpene synthase VenA from Streptomyces venezuelae ATCC 15439 in complex with pyrophosphate
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Zhang, L.L, Xie, Z.Z, Huang, J.-W, Hu, Y.C, Liu, W.D, Yang, Y, Chen, C.-C, Guo, R.-T.
Deposit date:2022-06-24
Release date:2023-06-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Molecular insights into the catalytic promiscuity of a bacterial diterpene synthase.
Nat Commun, 14, 2023
7Y9H
DownloadVisualize
BU of 7y9h by Molmil
Crystal structure of diterpene synthase VenA from Streptomyces venezuelae ATCC 15439
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Diterpene synthase VenA, ...
Authors:Zhang, L.L, Xie, Z.Z, Huang, J.-W, Hu, Y.C, Liu, W.D, Yang, Y, Chen, C.-C, Guo, R.-T.
Deposit date:2022-06-24
Release date:2023-06-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Molecular insights into the catalytic promiscuity of a bacterial diterpene synthase.
Nat Commun, 14, 2023
6IJ1
DownloadVisualize
BU of 6ij1 by Molmil
Crystal structure of a protein from Actinoplanes
Descriptor: ACETATE ION, IMIDAZOLE, Prenylcyclase
Authors:Yang, Z.Z, Zhang, L.L, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2018-10-08
Release date:2019-09-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.521 Å)
Cite:Crystal structure of TchmY from Actinoplanes teichomyceticus.
Acta Crystallogr.,Sect.F, 75, 2019
7W5S
DownloadVisualize
BU of 7w5s by Molmil
A nonheme iron- and alpha-ketoglutarate- dependent halogenase that catalyzes nucleotide substrates
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FE (II) ION, ...
Authors:Dai, L.H, Zhang, X, Hu, Y.M, Huang, J.W, Chen, C.C, Guo, R.T.
Deposit date:2021-11-30
Release date:2022-04-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural and Functional Insights into a Nonheme Iron- and alpha-Ketoglutarate-Dependent Halogenase That Catalyzes Chlorination of Nucleotide Substrates.
Appl.Environ.Microbiol., 88, 2022
7W5T
DownloadVisualize
BU of 7w5t by Molmil
A nonheme iron- and alpha-ketoglutarate- dependent halogenase that catalyzes nucleotide substrates
Descriptor: 2-OXOGLUTARIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Dai, L.H, Zhang, X, Hu, Y.M, Huang, J.W, Chen, C.C, Guo, R.T.
Deposit date:2021-11-30
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural and Functional Insights into a Nonheme Iron- and alpha-Ketoglutarate-Dependent Halogenase That Catalyzes Chlorination of Nucleotide Substrates.
Appl.Environ.Microbiol., 88, 2022

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon