Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7NE3
DownloadVisualize
BU of 7ne3 by Molmil
Human TET2 in complex with favourable DNA substrate.
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (5'-D(*AP*CP*AP*GP*GP*(5CM)P*GP*CP*CP*TP*G)-3'), ...
Authors:Rafalski, D, Bochtler, M.
Deposit date:2021-02-03
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function.
Sci Adv, 8, 2022
7NE6
DownloadVisualize
BU of 7ne6 by Molmil
Human TET2 in complex with unfavourable DNA substrate.
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (5'-D(*AP*CP*AP*GP*GP*(5CM)P*GP*CP*CP*TP*G)-3'), ...
Authors:Rafalski, D, Bochtler, M.
Deposit date:2021-02-03
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function.
Sci Adv, 8, 2022
4JZI
DownloadVisualize
BU of 4jzi by Molmil
Crystal Structure of Matriptase in complex with Inhibitor".
Descriptor: N-(trans-4-aminocyclohexyl)-2,6-bis(4-carbamimidoylphenoxy)pyridine-4-carboxamide, Suppressor of tumorigenicity 14 protein
Authors:Subramanya, H.S, Chandra, R.B, Ashok, K.N, Chakshusmathi, G, Ramesh, K.S.
Deposit date:2013-04-03
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of Pyridyl Bis(oxy)dibenzimidamide Derivatives as Selective Matriptase Inhibitors
ACS MED.CHEM.LETT., 4, 2013
7QT2
DownloadVisualize
BU of 7qt2 by Molmil
Antibody FenAb208 - fentanyl complex
Descriptor: Antibody heavy chain, Antibody light chain, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide
Authors:Zeelen, J.P, Straaten van, M, Stebbins, C.E.
Deposit date:2022-01-14
Release date:2023-05-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:A trypanosome-derived immunotherapeutics platform elicits potent high-affinity antibodies, negating the effects of the synthetic opioid fentanyl.
Cell Rep, 42, 2023
7QT0
DownloadVisualize
BU of 7qt0 by Molmil
Antibody FenAb136 - fentanyl complex
Descriptor: 2-[2-[2-[2-[[5-oxidanylidene-5-[2-[4-[phenyl(propanoyl)amino]piperidin-1-yl]ethylamino]pentanoyl]amino]ethanoylamino]ethanoylamino]ethanoylamino]ethanoic acid, Antibody heavy chain, Antibody light chain
Authors:Zeelen, J.P, Straaten van, M, Stebbins, C.E.
Deposit date:2022-01-14
Release date:2023-05-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:A trypanosome-derived immunotherapeutics platform elicits potent high-affinity antibodies, negating the effects of the synthetic opioid fentanyl.
Cell Rep, 42, 2023
7QT4
DownloadVisualize
BU of 7qt4 by Molmil
Antibody FenAb709 - fentanyl complex
Descriptor: 2-[2-[2-[2-[[5-oxidanylidene-5-[2-[4-[phenyl(propanoyl)amino]piperidin-1-yl]ethylamino]pentanoyl]amino]ethanoylamino]ethanoylamino]ethanoylamino]ethanoic acid, Antibody heavy chain, Antibody light chain
Authors:Zeelen, J.P, Straaten van, M, Stebbins, C.E.
Deposit date:2022-01-14
Release date:2023-05-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:A trypanosome-derived immunotherapeutics platform elicits potent high-affinity antibodies, negating the effects of the synthetic opioid fentanyl.
Cell Rep, 42, 2023
7QT3
DownloadVisualize
BU of 7qt3 by Molmil
Antibody FenAb609 - fentanyl complex
Descriptor: Antibody heavy chain, Antibody light chain, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide
Authors:Zeelen, J.P, Straaten van, M, Stebbins, C.E.
Deposit date:2022-01-14
Release date:2023-05-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A trypanosome-derived immunotherapeutics platform elicits potent high-affinity antibodies, negating the effects of the synthetic opioid fentanyl.
Cell Rep, 42, 2023
5EMB
DownloadVisualize
BU of 5emb by Molmil
Crystal structure of the SNX27 PDZ domain bound to the C-terminal phosphorylated PTHR PDZ binding motif
Descriptor: GLU-GLU-TRP-SEP-THR-VAL-MET, Sorting nexin-27
Authors:Collins, B.M, Clairfeuille, T.
Deposit date:2015-11-06
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex.
Nat.Struct.Mol.Biol., 23, 2016
5EMA
DownloadVisualize
BU of 5ema by Molmil
Crystal structure of the SNX27 PDZ domain bound to the phosphorylated C-terminal LRRC3B PDZ binding motif
Descriptor: ASP-ASP-ILE-SEP-THR-VAL-VAL, GLYCEROL, Sorting nexin-27
Authors:Collins, B.M, Clairfeuille, T.
Deposit date:2015-11-06
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex.
Nat.Struct.Mol.Biol., 23, 2016
5ELQ
DownloadVisualize
BU of 5elq by Molmil
Crystal structure of the SNX27 PDZ domain bound to the C-terminal DGKzeta PDZ binding motif
Descriptor: GLU-ASP-GLN-GLU-THR-ALA-VAL, Sorting nexin-27, TETRAETHYLENE GLYCOL
Authors:Collins, B.M, Clairfeuille, T.
Deposit date:2015-11-05
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex.
Nat.Struct.Mol.Biol., 23, 2016
5EM9
DownloadVisualize
BU of 5em9 by Molmil
Crystal structure of the SNX27 PDZ domain bound to the phosphorylated C-terminal 5HT4(a)R PDZ binding motif
Descriptor: SEP-LEU-GLU-SER-CYS-PHE, Sorting nexin-27
Authors:Collins, B.M, Clairfeuille, T.
Deposit date:2015-11-06
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex.
Nat.Struct.Mol.Biol., 23, 2016
8OK7
DownloadVisualize
BU of 8ok7 by Molmil
Variant Surface Glycoprotein VSG558 NTD
Descriptor: Variant surface glycoprotein 558, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zeelen, J.P, Stebbins, C.E, van Straaten, M, Zhong, J.
Deposit date:2023-03-27
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
8Q0E
DownloadVisualize
BU of 8q0e by Molmil
Crystal Structure of the N-terminal Domain of Variant Surface Glycoprotein 545 (VSG545) of Trypanosome brucei brucei Lister 427
Descriptor: Variant surface glycoprotein 545
Authors:van Straaten, M, Stebbins, C.E.
Deposit date:2023-07-28
Release date:2023-09-13
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
8OK4
DownloadVisualize
BU of 8ok4 by Molmil
Variant Surface Glycoprotein VSG11wt-Oil
Descriptor: Variant surface glycoprotein, alpha-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Zeelen, J.P, Stebbins, C.E, Aresta-Branco, F, Foti, K.
Deposit date:2023-03-27
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
8ONH
DownloadVisualize
BU of 8onh by Molmil
Variant Surface Glycoprotein VSG11wt-Oil
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Variant surface glycoprotein, alpha-D-glucopyranose, ...
Authors:Zeelen, J.P, Stebbins, C.E, Foti, K, Gkeka, A, Vlachou, E.P.
Deposit date:2023-04-03
Release date:2023-09-13
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
8OK5
DownloadVisualize
BU of 8ok5 by Molmil
Variant Surface Glycoprotein VSG11 monomer with iodine
Descriptor: IODIDE ION, Variant surface glycoprotein, alpha-D-glucopyranose, ...
Authors:Zeelen, J.P, Stebbins, C.E, Aresta-Branco, F.
Deposit date:2023-03-27
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
8OK6
DownloadVisualize
BU of 8ok6 by Molmil
Variant Surface Glycoprotein VSG11 two monomers
Descriptor: SULFATE ION, Variant surface glycoprotein, alpha-D-glucopyranose, ...
Authors:Gkeka, A, Vlachou, E.P, Zeelen, J.P, Stebbins, C.E.
Deposit date:2023-03-27
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
8Q0P
DownloadVisualize
BU of 8q0p by Molmil
Crystal Structure of an N-terminal Domain of Variant Surface Glycoprotein 21 (VSG21) of Trypanosome brucei brucei Lister 427
Descriptor: Variant surface glycoprotein MITat 1.21
Authors:Zeelen, J.P, Stebbins, C.E.
Deposit date:2023-07-28
Release date:2023-09-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
4JYT
DownloadVisualize
BU of 4jyt by Molmil
Crystal Structure of Matriptase in complex with Inhibitor
Descriptor: 4,4'-[{3-[(naphthalen-2-ylsulfonyl)amino]pyridine-2,6-diyl}bis(oxy)]dibenzenecarboximidamide, Suppressor of tumorigenicity 14 protein
Authors:Subramanya, H.S, Ravi, B.C, Ashok, K.N, Chakshusmathi, G, Ramesh, K.S.
Deposit date:2013-04-01
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of Pyridyl Bis(oxy)dibenzimidamide Derivatives as Selective Matriptase Inhibitors
ACS MED.CHEM.LETT., 4, 2013
4JZ1
DownloadVisualize
BU of 4jz1 by Molmil
Crystal Structure of Matriptase in complex with Inhibitor
Descriptor: 4,4'-[(3-{[(4-fluorophenyl)sulfonyl]amino}pyridine-2,6-diyl)bis(oxy)]dibenzenecarboximidamide, Suppressor of tumorigenicity 14 protein
Authors:Subramanya, H.S, Ravi, B.C, Ashok, K.N, Chakshusmathi, G, Ramesh, K.S.
Deposit date:2013-04-02
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of Pyridyl Bis(oxy)dibenzimidamide Derivatives as Selective Matriptase Inhibitors
ACS MED.CHEM.LETT., 4, 2013
6BTZ
DownloadVisualize
BU of 6btz by Molmil
Crystal structure of the PI3KC2alpha C2 domain in space group C121
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, GLYCEROL, Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha, ...
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-08
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018
6BTY
DownloadVisualize
BU of 6bty by Molmil
Crystal structure of the PI3KC2alpha C2 domain in space group P41212
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-08
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.678 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018
6BU0
DownloadVisualize
BU of 6bu0 by Molmil
Crystal structure of the PI3KC2alpha C2 domain in complex with IP6
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, FORMIC ACID, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-08
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.427 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018
6BUB
DownloadVisualize
BU of 6bub by Molmil
Crystal structure of the PI3KC2alpha PX domain in space group P432
Descriptor: GLYCEROL, Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha, SULFATE ION
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-09
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018
4NKN
DownloadVisualize
BU of 4nkn by Molmil
The Crystal Structure of the N-terminal domain of COMMD9
Descriptor: COMM domain-containing protein 9
Authors:Hospenthal, M, Celligoi, D, Lott, J.S.
Deposit date:2013-11-12
Release date:2014-11-26
Last modified:2018-08-22
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural insights into the architecture and membrane interactions of the conserved COMMD proteins.
Elife, 7, 2018

222926

數據於2024-07-24公開中

PDB statisticsPDBj update infoContact PDBjnumon