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5K16
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BU of 5k16 by Molmil
Crystal structure of free Ubiquitin-specific protease 12
Descriptor: GLYCEROL, Ubiquitin carboxyl-terminal hydrolase 12, ZINC ION
Authors:Li, H, D'Andrea, A.D, Zheng, N.
Deposit date:2016-05-17
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.599 Å)
Cite:Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63, 2016
5K1C
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BU of 5k1c by Molmil
Crystal structure of the UAF1/WDR20/USP12 complex
Descriptor: PHOSPHATE ION, TRIS(HYDROXYETHYL)AMINOMETHANE, Ubiquitin carboxyl-terminal hydrolase 12, ...
Authors:Li, H, D'Andrea, A.D, Zheng, N.
Deposit date:2016-05-18
Release date:2016-07-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63, 2016
5K1B
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BU of 5k1b by Molmil
Crystal structure of the UAF1/USP12 complex in F222 space group
Descriptor: Ubiquitin carboxyl-terminal hydrolase 12, WD repeat-containing protein 48, ZINC ION
Authors:Li, H, D'Andrea, A.D, Zheng, N.
Deposit date:2016-05-18
Release date:2016-07-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63, 2016
5Y7X
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BU of 5y7x by Molmil
Human Peroxisome proliferator-activated receptor (PPAR) delta in complexed with a potent and selective agonist
Descriptor: 2-[2-methyl-4-[[4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-selenazol-5-yl]methylsulfanyl]phenoxy]ethanoic acid, CHLORIDE ION, POTASSIUM ION, ...
Authors:Kim, H.L, Chin, J.W, Cho, S.J, Song, J.Y, Yoon, H.S, Bae, J.H.
Deposit date:2017-08-18
Release date:2018-08-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Highly potent and selective PPAR delta agonist reverses memory deficits in mouse models of Alzheimer's disease.
Theranostics, 14, 2024
6IJS
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BU of 6ijs by Molmil
Human PPARgamma ligand binding domain complexed with SB1494
Descriptor: 16-mer peptide from Nuclear receptor coactivator 1, N-{[3-({[(1R,2S)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide, Peroxisome proliferator-activated receptor gamma
Authors:Jang, J.Y, Han, B.W.
Deposit date:2018-10-11
Release date:2019-10-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for the inhibitory effects of a novel reversible covalent ligand on PPAR gamma phosphorylation.
Sci Rep, 9, 2019
6IJR
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BU of 6ijr by Molmil
Human PPARgamma ligand binding domain complexed with SB1495
Descriptor: 16 mer peptide from Nuclear receptor coactivator 1, N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide, Peroxisome proliferator-activated receptor gamma
Authors:Jang, J.Y, Han, B.W.
Deposit date:2018-10-11
Release date:2019-10-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis for the inhibitory effects of a novel reversible covalent ligand on PPAR gamma phosphorylation.
Sci Rep, 9, 2019
6PLN
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BU of 6pln by Molmil
X-ray crystal structure of Pyrococcus furiosus general transcription factor TFE-alpha
Descriptor: Transcription factor E
Authors:Murakami, K.S, Jun, S.H.
Deposit date:2019-07-01
Release date:2020-07-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase.
Nat Commun, 11, 2020
7Y6K
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BU of 7y6k by Molmil
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with K202.B bispecific antibody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab region of heavy chain from K202.B, bispecific antibody, ...
Authors:Yoo, Y, Cho, H.S.
Deposit date:2022-06-20
Release date:2023-07-19
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Novel bispecific human antibody platform specifically targeting a fully open spike conformation potently neutralizes multiple SARS-CoV-2 variants.
Antiviral Res., 212, 2023
9IXS
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BU of 9ixs by Molmil
Crystal structure of TEAD3 YAP binding domain with compound 1
Descriptor: Transcriptional enhancer factor TEF-5, ~{N}-[(1~{S})-1-phenylethyl]-5-[4-(trifluoromethyl)phenyl]-3,4-dihydro-1~{H}-isoquinoline-2-carboxamide
Authors:Yoo, Y.
Deposit date:2024-07-29
Release date:2025-04-16
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Structure-based optimization of TEAD inhibitors: Exploring a novel subpocket near Glu347 for the treatment of NF2-mutant cancer.
Bioorg.Chem., 159, 2025
9IXT
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BU of 9ixt by Molmil
Crystal structure of TEAD3 YAP binding domain with compound 2
Descriptor: Transcriptional enhancer factor TEF-5, ~{N}-[(1~{S})-4-azanyl-4-oxidanylidene-1-phenyl-butyl]-5-[4-(trifluoromethyl)phenyl]-3,4-dihydro-1~{H}-isoquinoline-2-carboxamide
Authors:Yoo, Y.
Deposit date:2024-07-29
Release date:2025-04-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based optimization of TEAD inhibitors: Exploring a novel subpocket near Glu347 for the treatment of NF2-mutant cancer.
Bioorg.Chem., 159, 2025
7XW3
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BU of 7xw3 by Molmil
Cryo-EM structure of an apo-form of human DICER
Descriptor: Endoribonuclease Dicer
Authors:Lee, H, Roh, S.-H.
Deposit date:2022-05-26
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Structure of the human DICER-pre-miRNA complex in a dicing state.
Nature, 615, 2023
7XW2
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BU of 7xw2 by Molmil
Cryo-EM structure of human DICER-pre-miRNA in a dicing state
Descriptor: CALCIUM ION, Endoribonuclease Dicer, RNA (73-MER)
Authors:Lee, H, Roh, S.-H.
Deposit date:2022-05-26
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structure of the human DICER-pre-miRNA complex in a dicing state.
Nature, 615, 2023
5YSS
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BU of 5yss by Molmil
Crystal structure of aminocaproic acid cyclase in complex with NAD (+)
Descriptor: 3-hydroxybutyrate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Fu, Y, Yeom, S.J, Lee, S.G.
Deposit date:2017-11-15
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.276 Å)
Cite:A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts
Nat Commun, 9, 2018
5Y86
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BU of 5y86 by Molmil
Crystal structure of kinase
Descriptor: 1,2-ETHANEDIOL, 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE, Dual specificity tyrosine-phosphorylation-regulated kinase 3, ...
Authors:Kim, K.L, Cha, J.S, Cho, Y.S, Kim, H.Y, Chang, N.P, Cho, H.S.
Deposit date:2017-08-18
Release date:2018-05-02
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Human Dual-Specificity Tyrosine-Regulated Kinase 3 Reveals New Structural Features and Insights into its Auto-phosphorylation
J. Mol. Biol., 430, 2018
9JRY
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BU of 9jry by Molmil
Crystal structure of FiDCB, a dual-cysteine cyanobacterial phytochrome of Fischerella sp. PCC 9605
Descriptor: 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, FiDCB
Authors:Yang, H.W, Park, Y.-I, Song, J.-J.
Deposit date:2024-09-29
Release date:2025-01-22
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Dual-Cys bacteriophytochromes: intermediates in cyanobacterial phytochrome evolution?
Febs J., 292, 2025
8IVU
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BU of 8ivu by Molmil
Crystal Structure of Human NAMPT in complex with A4276
Descriptor: N-[[4-(6-methyl-1,3-benzoxazol-2-yl)phenyl]methyl]pyridine-3-carboxamide, Nicotinamide phosphoribosyltransferase, PHOSPHATE ION
Authors:Kang, B.G, Cha, S.S.
Deposit date:2023-03-28
Release date:2023-10-11
Method:X-RAY DIFFRACTION (2.09000921 Å)
Cite:Discovery of a novel NAMPT inhibitor that selectively targets NAPRT-deficient EMT-subtype cancer cells and alleviates chemotherapy-induced peripheral neuropathy.
Theranostics, 13, 2023
7YC5
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BU of 7yc5 by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with K202.B bispecific antibody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Bispecific anitybody (scFv and light chain of the antibody), Heavy chain from K202.B antibody, ...
Authors:Yoo, Y, Cho, H.S.
Deposit date:2022-06-30
Release date:2023-07-05
Last modified:2025-03-05
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Novel bispecific human antibody platform specifically targeting a fully open spike conformation potently neutralizes multiple SARS-CoV-2 variants
Antiviral Res., 212, 2023
9ERI
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BU of 9eri by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii bound to NADH
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
9ERL
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BU of 9erl by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii in apo state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
9ERJ
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BU of 9erj by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii reduced with low potential Ferredoxin
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
9ERK
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BU of 9erk by Molmil
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii reduced with low potential ferredoxin (consensus map)
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Schuller, J.M.
Deposit date:2024-03-23
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.
Nat Commun, 16, 2025
6VC7
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BU of 6vc7 by Molmil
Structure of the F349A mutant of the periplasmic domain of YejM from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ETHANOLAMINE, ...
Authors:Gabale, U, Ressl, S.
Deposit date:2019-12-20
Release date:2020-08-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The essential inner membrane protein YejM is a metalloenzyme.
Sci Rep, 10, 2020
6VDF
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BU of 6vdf by Molmil
Structure of the periplasmic domain of YejM from Salmonella typhimurium (twinned)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
Authors:Gabale, U, Ressl, S.
Deposit date:2019-12-25
Release date:2020-08-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The essential inner membrane protein YejM is a metalloenzyme.
Sci Rep, 10, 2020
8J1Q
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BU of 8j1q by Molmil
CryoEM structure of SARS CoV-2 RBD and Aptamer complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AM032-0, AM047-0, ...
Authors:Rahman, M.S, Jang, S.K, Lee, J.O.
Deposit date:2023-04-13
Release date:2023-06-21
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure-Guided Development of Bivalent Aptamers Blocking SARS-CoV-2 Infection.
Molecules, 28, 2023
9J9Z
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BU of 9j9z by Molmil
Cryo-EM structure of Outward state Anhydromuropeptide permease (AmpG) complex with GlcNAc-1,6-anhMurNAc
Descriptor: (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid, Muropeptide transporter,Soluble cytochrome b562, anti-BRIL Fab Heavy chain, ...
Authors:Chang, N, Kim, U, Cho, H.
Deposit date:2024-08-23
Release date:2025-07-16
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structural and functional insights of AmpG in muropeptide transport and multiple beta-lactam antibiotics resistance.
Nat Commun, 16, 2025

238895

数据于2025-07-16公开中

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