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5K1B

Crystal structure of the UAF1/USP12 complex in F222 space group

Summary for 5K1B
Entry DOI10.2210/pdb5k1b/pdb
Related5K16 5K19 5K1A 5K1C
DescriptorWD repeat-containing protein 48, Ubiquitin carboxyl-terminal hydrolase 12, ZINC ION (3 entities in total)
Functional Keywordswd40 domain, sumo-like domain, ubiquitin-specific protease 12, usp12, usp1-associated factor 1, deubiquitinating enzyme, dub, protein binding-hydrolase complex, protein binding/hydrolase
Biological sourceHomo sapiens (Human)
More
Total number of polymer chains2
Total formula weight118918.06
Authors
Li, H.,D'Andrea, A.D.,Zheng, N. (deposition date: 2016-05-18, release date: 2016-07-20, Last modification date: 2024-11-06)
Primary citationLi, H.,Lim, K.S.,Kim, H.,Hinds, T.R.,Jo, U.,Mao, H.,Weller, C.E.,Sun, J.,Chatterjee, C.,D'Andrea, A.D.,Zheng, N.
Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63:249-260, 2016
Cited by
PubMed Abstract: Ubiquitin-specific proteases (USPs) constitute the largest family of deubiquitinating enzymes, whose catalytic competency is often modulated by their binding partners through unknown mechanisms. Here we report on a series of crystallographic and biochemical analyses of an evolutionarily conserved deubiquitinase, USP12, which is activated by two β-propeller proteins, UAF1 and WDR20. Our structures reveal that UAF1 and WDR20 interact with USP12 at two distinct sites far from its catalytic center. Without increasing the substrate affinity of USP12, the two β-propeller proteins potentiate the enzyme through different allosteric mechanisms. UAF1 docks at the distal end of the USP12 Fingers domain and induces a cascade of structural changes that reach a critical ubiquitin-contacting loop adjacent to the catalytic cleft. By contrast, WDR20 anchors at the base of this loop and remotely modulates the catalytic center of the enzyme. Our results provide a mechanistic example for allosteric activation of USPs by their regulatory partners.
PubMed: 27373336
DOI: 10.1016/j.molcel.2016.05.031
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (3.3 Å)
Structure validation

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