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6QJO
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BU of 6qjo by Molmil
DNA containing both right- and left-handed parallel-stranded G-quadruplexes
分子名称: DNA (28-MER), POTASSIUM ION
著者Winnerdy, F.R, Bakalar, B, Maity, A, Vandana, J.J, Schmitt, E, Mechulam, Y, Phan, A.T.
登録日2019-01-24
公開日2019-07-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
Nucleic Acids Res., 47, 2019
6JCE
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BU of 6jce by Molmil
NMR solution and X-ray crystal structures of a DNA containing both right-and left-handed parallel-stranded G-quadruplexes
分子名称: 29-mer DNA
著者Winnerdy, F.R, Bakalar, B, Maity, A, Vandana, J.J, Mechulam, Y, Schmitt, E, Phan, A.T.
登録日2019-01-28
公開日2019-07-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
Nucleic Acids Res., 47, 2019
6K3Y
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BU of 6k3y by Molmil
G-quadruplex complex with cyclic dinucleotide 3'-3' cGAMP
分子名称: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, DNA (5'-D(*TP*TP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*T)-3')
著者Winnerdy, F.R, Heddi, B, Phan, A.T.
登録日2019-05-22
公開日2020-01-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution Structures of a G-Quadruplex Bound to Linear- and Cyclic-Dinucleotides.
J.Am.Chem.Soc., 141, 2019
6K3X
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BU of 6k3x by Molmil
G-quadruplex complex with linear dinucleotide d(AG)
分子名称: DNA (5'-D(*AP*G)-3'), DNA (5'-D(*TP*TP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*T)-3')
著者Winnerdy, F.R, Heddi, B, Phan, A.T.
登録日2019-05-22
公開日2020-01-15
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution Structures of a G-Quadruplex Bound to Linear- and Cyclic-Dinucleotides.
J.Am.Chem.Soc., 141, 2019
6JCD
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BU of 6jcd by Molmil
G-quadruplex peripheral knot
分子名称: 24-mer DNA
著者Winnerdy, F.R, Truong, T.H.A, Phan, A.T.
登録日2019-01-28
公開日2019-08-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献An Unprecedented Knot-like G-Quadruplex Peripheral Motif.
Angew.Chem.Int.Ed.Engl., 58, 2019
7CV4
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BU of 7cv4 by Molmil
Quadruplex-duplex hybrid structure in the PIM1 gene, Form 2
分子名称: DNA (26-MER)
著者Winnerdy, F.R, Tan, D.T.J, Lim, K.W, Phan, A.T.
登録日2020-08-25
公開日2020-10-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Coexistence of two quadruplex-duplex hybrids in the PIM1 gene.
Nucleic Acids Res., 48, 2020
7CV3
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BU of 7cv3 by Molmil
Quadruplex-duplex hybrid structure in the PIM1 gene, Form 1
分子名称: PIM1 promoter, Form 1
著者Winnerdy, F.R, Tan, D.J.Y, Lim, K.W, Phan, A.T.
登録日2020-08-25
公開日2020-10-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Coexistence of two quadruplex-duplex hybrids in the PIM1 gene.
Nucleic Acids Res., 48, 2020
7D5F
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BU of 7d5f by Molmil
Left-handed G-quadruplex containing 3 bulges
分子名称: 3xBulge-LHG4motif
著者Winnerdy, F.R, Das, P, Ngo, K.H, Maity, A, Bakalar, B, Mechulam, Y, Schmitt, E, Phan, A.T.
登録日2020-09-25
公開日2021-02-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Bulges in left-handed G-quadruplexes.
Nucleic Acids Res., 49, 2021
7EUC
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BU of 7euc by Molmil
Parallel G-quadruplex structure
分子名称: DNA (5'-D(*TP*TP*GP*GP*GP*G)-3'), DNA (5'-D(P*GP*GP*GP*G)-3'), DNA (5'-D(P*GP*GP*GP*GP*T)-3'), ...
著者Winnerdy, F.R, Devi, G, Ang, J.C.Y, Lim, K.W, Phan, A.T.
登録日2021-05-17
公開日2022-03-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Four-Layered Intramolecular Parallel G-Quadruplex with Non-Nucleotide Loops: An Ultra-Stable Self-Folded DNA Nano-Scaffold.
Acs Nano, 16, 2022
6AC7
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BU of 6ac7 by Molmil
Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter
分子名称: 5'-D(*TP*GP*GP*GP*GP*TP*CP*CP*GP*AP*GP*GP*CP*GP*GP*GP*GP*CP*TP*TP*GP*GP*G)-3'
著者Sengar, A, Vandana, J.J, Chambers, V.S, Di Antonio, M, Winnerdy, F.R, Balasubramanian, S, Phan, A.T.
登録日2018-07-25
公開日2019-02-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter.
Nucleic Acids Res., 47, 2019
6KVB
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BU of 6kvb by Molmil
Structure of an intra-locked G-quadruplex
分子名称: DNA (28-mer)
著者Maity, A, Winnerdy, F.R, Chang, W.D, Chen, G, Phan, A.T.
登録日2019-09-03
公開日2020-03-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Intra-locked G-quadruplex structures formed by irregular DNA G-rich motifs.
Nucleic Acids Res., 48, 2020
6L92
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BU of 6l92 by Molmil
A basket type G-quadruplex in WNT DNA promoter
分子名称: DNA (5'-D(*GP*GP*GP*CP*CP*AP*CP*CP*GP*GP*GP*CP*AP*GP*TP*GP*GP*GP*CP*GP*GP*G)-3')
著者Wang, Z.F, Li, M.H, Chu, I.T, Winnerdy, F.R, Phan, A.T, Chang, T.C.
登録日2019-11-08
公開日2019-12-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Cytosine epigenetic modification modulates the formation of an unprecedented G4 structure in the WNT1 promoter.
Nucleic Acids Res., 48, 2020
6L8M
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BU of 6l8m by Molmil
WNT DNA promoter mutant G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*TP*CP*AP*CP*CP*GP*GP*GP*CP*AP*GP*TP*GP*GP*GP*CP*GP*GP*G)-3')
著者Wang, Z.F, Li, M.H, Chu, I.T, Winnerdy, F.R, Phan, A.T, Chang, T.C.
登録日2019-11-06
公開日2019-12-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Cytosine epigenetic modification modulates the formation of an unprecedented G4 structure in the WNT1 promoter.
Nucleic Acids Res., 48, 2020
7XDH
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BU of 7xdh by Molmil
Crystal structure of a dimeric interlocked parallel G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*GP*T)-3'), POTASSIUM ION
著者Ngo, K.H, Liew, C.W, Lattmann, S, Winnerdy, F.R, Phan, A.T.
登録日2022-03-27
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A.G.G.G.G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun., 613, 2022
7X7G
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BU of 7x7g by Molmil
Crystal structure of a dimeric interlocked parallel G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*AP*GP*GP*TP*GP*GP*GP*T)-3'), POTASSIUM ION
著者Ngo, K.H, Liew, C.W, Lattmann, S, Winnerdy, F.R, Phan, A.T.
登録日2022-03-09
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A.G.G.G.G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun., 613, 2022
7XHD
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BU of 7xhd by Molmil
Crystal structure of a dimeric interlocked parallel G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*TP*GP*GP*GP*T)-3'), POTASSIUM ION
著者Ngo, K.H, Liew, C.W, Lattmann, S, Winnerdy, F.R, Phan, A.T.
登録日2022-04-08
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A•G•G•G•G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun., 613, 2022
7XIE
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BU of 7xie by Molmil
Crystal structure of a dimeric interlocked parallel G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*GP*GP*GP*TP*GP*GP*GP*T)-3'), POTASSIUM ION
著者Ngo, K.H, Liew, C.W, Lattmann, S, Winnerdy, F.R, Phan, A.T.
登録日2022-04-13
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A•G•G•G•G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun., 613, 2022
7XH9
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BU of 7xh9 by Molmil
Crystal structure of a dimeric interlocked parallel G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*CP*GP*GP*TP*GP*GP*GP*T)-3'), POTASSIUM ION, STRONTIUM ION
著者Ngo, K.H, Liew, C.W, Lattmann, S, Winnerdy, F.R, Phan, A.T.
登録日2022-04-07
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A.G.G.G.G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun., 613, 2022
7D5D
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BU of 7d5d by Molmil
Left-handed G-quadruplex containing one bulge
分子名称: 1xBulge-LHG4motif, POTASSIUM ION, SPERMINE
著者Das, P, Ngo, K.H, Winnerdy, F.R, Maity, A, Bakalar, B, Mechulam, Y, Schmitt, E, Phan, A.T.
登録日2020-09-25
公開日2021-02-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Bulges in left-handed G-quadruplexes.
Nucleic Acids Res., 49, 2021
7D5E
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BU of 7d5e by Molmil
Left-handed G-quadruplex containing two bulges
分子名称: 2xBulge-LHG4motif, POTASSIUM ION, SODIUM ION, ...
著者Das, P, Maity, A, Ngo, K.H, Winnerdy, F.R, Bakalar, B, Mechulam, Y, Schmitt, E, Phan, A.T.
登録日2020-09-25
公開日2021-02-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.296 Å)
主引用文献Bulges in left-handed G-quadruplexes.
Nucleic Acids Res., 49, 2021
7CUK
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BU of 7cuk by Molmil
Structure of a GG mismatch-containing duplex formed by G4C2 repeats
分子名称: DNA (11-mer)
著者Maity, A, Chen, G, Phan, A.T, Winnerdy, F.R.
登録日2020-08-23
公開日2021-03-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Duplexes Formed by G 4 C 2 Repeats Contain Alternate Slow- and Fast-Flipping G·G Base Pairs.
Biochemistry, 60, 2021
7DFY
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Novel motif for left-handed G-quadruplex formation
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2xMotif2, POTASSIUM ION, ...
著者Das, P, Winnerdy, F.R, Maity, A, Mechulam, Y, Phan, A.T.
登録日2020-11-10
公開日2021-09-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献A novel minimal motif for left-handed G-quadruplex formation.
Chem.Commun.(Camb.), 57, 2021

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件を2024-06-12に公開中

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