Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4R36
DownloadVisualize
BU of 4r36 by Molmil
Crystal structure analysis of LpxA, a UDP-N-acetylglucosamine acyltransferase from Bacteroides fragilis 9343
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ACETATE ION, ...
著者Ngo, A, Fong, K, Cox, D, Fisher, A, Chen, X.
登録日2014-08-14
公開日2015-05-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of Bacteroides fragilis uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) acyltransferase (BfLpxA).
Acta Crystallogr.,Sect.D, 71, 2015
2AB5
DownloadVisualize
BU of 2ab5 by Molmil
bI3 LAGLIDADG Maturase
分子名称: SULFATE ION, mRNA maturase
著者Longo, A, Leonard, C.W, Bassi, G.S, Berndt, D, Krahn, J.M, Hall, T.M, Weeks, K.M.
登録日2005-07-14
公開日2005-08-30
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase
Nat.Struct.Mol.Biol., 12, 2005
4JVD
DownloadVisualize
BU of 4jvd by Molmil
Crystal structure of PqsR coinducer binding domain of Pseudomonas aeruginosa with ligand NHQ
分子名称: 2-nonylquinolin-4(1H)-one, Transcriptional regulator MvfR
著者Ilangovan, A, Emsley, J, Williams, P.
登録日2013-03-25
公開日2013-08-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural basis for native agonist and synthetic inhibitor recognition by the Pseudomonas aeruginosa quorum sensing regulator PqsR (MvfR).
Plos Pathog., 9, 2013
4JVI
DownloadVisualize
BU of 4jvi by Molmil
Crystal structure of PqsR co-inducer binding domain of Pseudomonas aeruginosa with inhibitor 3NH2-7Cl-C9QZN
分子名称: 3-amino-7-chloro-2-nonylquinazolin-4(3H)-one, Transcriptional regulator MvfR
著者Ilangovan, A, Williams, P, Emsley, J.
登録日2013-03-25
公開日2013-08-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for native agonist and synthetic inhibitor recognition by the Pseudomonas aeruginosa quorum sensing regulator PqsR (MvfR).
Plos Pathog., 9, 2013
4JVC
DownloadVisualize
BU of 4jvc by Molmil
Crystal structure of PqsR co-inducer binding domain
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Transcriptional regulator MvfR
著者Ilangovan, A, Emsley, J, Williams, P.
登録日2013-03-25
公開日2013-08-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for native agonist and synthetic inhibitor recognition by the Pseudomonas aeruginosa quorum sensing regulator PqsR (MvfR).
Plos Pathog., 9, 2013
5N8O
DownloadVisualize
BU of 5n8o by Molmil
Cryo EM structure of the conjugative relaxase TraI of the F/R1 plasmid system
分子名称: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA helicase I
著者Ilangovan, A, Zanetti, G, Waksman, G.
登録日2017-02-23
公開日2017-05-03
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM Structure of a Relaxase Reveals the Molecular Basis of DNA Unwinding during Bacterial Conjugation
Cell, 169, 2017
2H1K
DownloadVisualize
BU of 2h1k by Molmil
Crystal structure of the Pdx1 homeodomain in complex with DNA
分子名称: 15-mer DNA, Pancreatic and duodenal homeobox 1
著者Longo, A, Guanga, G.P, Rose, R.B.
登録日2006-05-16
公開日2007-03-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Structural basis for induced fit mechanisms in DNA recognition by the pdx1 homeodomain
Biochemistry, 46, 2007
4R37
DownloadVisualize
BU of 4r37 by Molmil
Crystal structure analysis of LpxA, a UDP-N-acetylglucosamine acyltransferase from Bacteroides fragilis 9343 with UDP-GlcNAc
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ACETATE ION, ...
著者Fisher, A.J, Chen, X, Ngo, A.
登録日2014-08-14
公開日2015-05-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of Bacteroides fragilis uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) acyltransferase (BfLpxA).
Acta Crystallogr.,Sect.D, 71, 2015
2QL2
DownloadVisualize
BU of 2ql2 by Molmil
Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA
分子名称: DNA (5'-D(*DAP*DGP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DTP*DGP*DGP*DCP*DCP*DTP*DA)-3'), DNA (5'-D(*DTP*DAP*DGP*DGP*DCP*DCP*DAP*DTP*DCP*DTP*DGP*DGP*DTP*DCP*DCP*DT)-3'), Neurogenic differentiation factor 1, ...
著者Rose, R.B, Longo, A, Guanga, G.P.
登録日2007-07-12
公開日2008-11-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of E47-NeuroD1/beta2 bHLH domain-DNA complex: heterodimer selectivity and DNA recognition.
Biochemistry, 47, 2008
2BPM
DownloadVisualize
BU of 2bpm by Molmil
STRUCTURE OF CDK2-CYCLIN A WITH PHA-630529
分子名称: (2S)-N-[(3Z)-5-CYCLOPROPYL-3H-PYRAZOL-3-YLIDENE]-2-[4-(2-OXOIMIDAZOLIDIN-1-YL)PHENYL]PROPANAMIDE, CELL DIVISION PROTEIN KINASE 2, CYCLIN A2, ...
著者Cameron, A, Fogliatto, G, Pevarello, P, Brasca, M.G, Orsini, P, Traquandi, G, Longo, A, Nesi, M, Orzi, F, Piutti, C, Sansonna, P, Varasi, M, Vulpetti, A, Roletto, F, Alzani, R, Ciomei, M, Albanese, C, Pastori, W, Marsiglio, A, Pesenti, E, Fiorentini, F, Bischoff, J.R, Mercurio, C.
登録日2005-04-21
公開日2005-12-08
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献3-Aminopyrazole Inhibitors of Cdk2-Cyclin a as Antitumor Agents. 2. Lead Optimization
J.Med.Chem., 48, 2005
6W1X
DownloadVisualize
BU of 6w1x by Molmil
Cryo-EM structure of anti-CRISPR AcrIF9, bound to the type I-F crRNA-guided CRISPR surveillance complex
分子名称: CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, CRISPR-associated protein Csy3, ...
著者Hirschi, M, Santiago-Frangos, A, Wilkinson, R, Golden, S.M, Wiedenheft, B, Lander, G.
登録日2020-03-04
公開日2020-05-13
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献AcrIF9 tethers non-sequence specific dsDNA to the CRISPR RNA-guided surveillance complex.
Nat Commun, 11, 2020
6WHI
DownloadVisualize
BU of 6whi by Molmil
Cryo-electron microscopy structure of the type I-F CRISPR RNA-guided surveillance complex bound to the anti-CRISPR AcrIF9
分子名称: CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, CRISPR-associated protein Csy3, ...
著者Hirschi, M, Santiago-Frangos, A, Wilkinson, R, Golden, S.M, Wiedenheft, B, Lander, G.
登録日2020-04-08
公開日2020-05-13
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献AcrIF9 tethers non-sequence specific dsDNA to the CRISPR RNA-guided surveillance complex.
Nat Commun, 11, 2020
8FLJ
DownloadVisualize
BU of 8flj by Molmil
Cas1-Cas2/3 integrase and IHF bound to CRISPR leader, repeat and foreign DNA
分子名称: CRISPR leader and repeat, anti-sense strand of DNA, CRISPR leader, ...
著者Santiago-Frangos, A, Henriques, W.S, Wiegand, T, Gauvin, C, Buyukyoruk, M, Neselu, K, Eng, E.T, Lander, G.C, Wiedenheft, B.
登録日2022-12-21
公開日2023-09-06
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (3.48 Å)
主引用文献Structure reveals why genome folding is necessary for site-specific integration of foreign DNA into CRISPR arrays.
Nat.Struct.Mol.Biol., 30, 2023
6NE0
DownloadVisualize
BU of 6ne0 by Molmil
Structure of double-stranded target DNA engaged Csy complex from Pseudomonas aeruginosa (PA-14)
分子名称: CRISPR RNA (60-MER), CRISPR target DNA (44-MER), CRISPR-associated endonuclease Cas6/Csy4, ...
著者Chowdhury, S, Rollins, M.F, Carter, J, Golden, S.M, Miettinen, H.M, Santiago-Frangos, A, Faith, D, Lawrence, M.C, Wiedenheft, B, Lander, G.C.
登録日2018-12-15
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure Reveals a Mechanism of CRISPR-RNA-Guided Nuclease Recruitment and Anti-CRISPR Viral Mimicry.
Mol. Cell, 74, 2019
2WXV
DownloadVisualize
BU of 2wxv by Molmil
Structure of CDK2-CYCLIN A with a Pyrazolo(4,3-h) quinazoline-3- carboxamide inhibitor
分子名称: CELL DIVISION PROTEIN KINASE 2, CYCLIN-A2, N,1-DIMETHYL-8-{[1-(METHYLSULFONYL)PIPERIDIN-4-YL]AMINO}-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE, ...
著者Traquandi, G, Ciomei, M, Ballinari, D, Casale, E, Colombo, N, Croci, V, Fiorentini, F, Isacchi, A, Longo, A, Mercurio, C, Panzeri, A, Pastori, W, Pevarello, P, Volpi, D, Roussel, P, Vulpetti, A, Brasca, M.G.
登録日2009-11-10
公開日2010-02-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Identification of Potent Pyrazolo[4,3-H]Quinazoline-3-Carboxamides as Multi-Cyclin-Dependent Kinase Inhibitors.
J.Med.Chem., 53, 2010
7OKN
DownloadVisualize
BU of 7okn by Molmil
Structure of the outer-membrane core complex (inner ring) from a conjugative type IV secretion system
分子名称: TraB, Type IV conjugative transfer system lipoprotein TraV
著者Amin, H, Ilangovan, A, Costa, T.R.D.
登録日2021-05-18
公開日2021-12-01
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.34 Å)
主引用文献Architecture of the outer-membrane core complex from a conjugative type IV secretion system.
Nat Commun, 12, 2021
7OKO
DownloadVisualize
BU of 7oko by Molmil
Structure of the outer-membrane core complex (outer ring) from a conjugative type IV secretion system
分子名称: TraB, Type IV conjugative transfer system lipoprotein TraV, Type-F conjugative transfer system secretin TraK
著者Amin, H, Ilangovan, A, Costa, T.R.D.
登録日2021-05-18
公開日2021-12-08
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Architecture of the outer-membrane core complex from a conjugative type IV secretion system.
Nat Commun, 12, 2021
1H56
DownloadVisualize
BU of 1h56 by Molmil
Structural and biochemical characterization of a new magnesium ion binding site near Tyr94 in the restriction endonuclease PvuII
分子名称: MAGNESIUM ION, TYPE II RESTRICTION ENZYME PVUII
著者Spyrida, A, Matzen, C, Lanio, T, Jeltsch, A, Simoncsits, A, Athanasiadis, A, Scheuring-Vanamee, E, Kokkinidis, M, Pingoud, A.
登録日2001-05-20
公開日2003-08-07
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and Biochemical Characterization of a New Mg(2+) Binding Site Near Tyr94 in the Restriction Endonuclease PvuII.
J.Mol.Biol., 331, 2003
1KTU
DownloadVisualize
BU of 1ktu by Molmil
NuiA
分子名称: NuiA
著者Kirby, T.W, Mueller, G.A, DeRose, E.F, Lebetkin, M.S, Meiss, G, Pingoud, A, London, R.E.
登録日2002-01-17
公開日2002-12-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The Nuclease A Inhibitor represents a new variation of the rare PR-1 fold.
J.Mol.Biol., 320, 2002
1Y42
DownloadVisualize
BU of 1y42 by Molmil
Crystal structure of a C-terminally truncated CYT-18 protein
分子名称: TYROSINE, Tyrosyl-tRNA synthetase, mitochondrial
著者Paukstelis, P.J, Coon, R, Madabusi, L, Nowakowski, J, Monzingo, A, Robertus, J, Lambowitz, A.M.
登録日2004-11-29
公開日2005-02-15
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A tyrosyl-tRNA synthetase adapted to function in group I intron splicing by acquiring a new RNA binding surface.
Mol.Cell, 17, 2005
1ZM8
DownloadVisualize
BU of 1zm8 by Molmil
Apo Crystal structure of Nuclease A from Anabaena sp.
分子名称: MANGANESE (II) ION, Nuclease, SODIUM ION, ...
著者Ghosh, M, Meiss, G, Pingoud, A, London, R.E, Pedersen, L.C.
登録日2005-05-10
公開日2005-06-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Insights into the Mechanism of Nuclease A, a beta beta alpha Metal Nuclease from Anabaena.
J.Biol.Chem., 280, 2005
8OJJ
DownloadVisualize
BU of 8ojj by Molmil
Cryo-EM structure of the DnaD-NTD tetramer
分子名称: DNA replication protein DnaD
著者Winterhalter, C, Pelliciari, S, Cronin, N, Costa, T.R.D, Murray, H, Ilangovan, A.
登録日2023-03-24
公開日2023-05-17
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (5.47 Å)
主引用文献The DNA replication initiation protein DnaD recognises a specific strand of the Bacillus subtilis chromosome origin.
Nucleic Acids Res., 51, 2023
7KHW
DownloadVisualize
BU of 7khw by Molmil
Cryo-EM structure of enteropathogenic Escherichia coli type III secretion system EspA filament
分子名称: Translocon EspA
著者Zheng, W, Ilangovan, A, Costa, T.R.D, Egelman, E.H.
登録日2020-10-22
公開日2020-12-23
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryoelectron-microscopy structure of the enteropathogenic Escherichia coli type III secretion system EspA filament.
Proc.Natl.Acad.Sci.USA, 118, 2021
4L0J
DownloadVisualize
BU of 4l0j by Molmil
Structure of a translocation signal domain mediating conjugative transfer by type IV secretion systems
分子名称: DNA helicase I, MAGNESIUM ION, SULFATE ION
著者Redzej, A, Ilangovan, A, Lang, S, Gruber, C.J, Topf, M, Zangger, K, Zechner, E.L, Waksman, G.
登録日2013-05-31
公開日2013-06-19
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of a translocation signal domain mediating conjugative transfer by type IV secretion systems.
Mol.Microbiol., 89, 2013
8BTG
DownloadVisualize
BU of 8btg by Molmil
Cryo-EM structure of the bacterial replication origin opening basal unwinding system
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Chromosomal replication initiator protein DnaA, DNA (41-MER), ...
著者Pelliciari, S, Bodet-Lefevre, S, Murray, H, Ilangovan, A.
登録日2022-11-28
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The bacterial replication origin BUS promotes nucleobase capture.
Nat Commun, 14, 2023

 

123>

227344

件を2024-11-13に公開中

PDB statisticsPDBj update infoContact PDBjnumon