3UYO
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2OCF
| Human estrogen receptor alpha ligand-binding domain in complex with estradiol and the E2#23 FN3 monobody | 分子名称: | ESTRADIOL, Estrogen receptor, Fibronectin | 著者 | Rajan, S.S, Kuruvilla, S.M, Sharma, S.K, Kim, Y, Huang, J, Koide, A, Koide, S, Joachimiak, A, Greene, G.L. | 登録日 | 2006-12-20 | 公開日 | 2007-11-06 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (2.95 Å) | 主引用文献 | Probing protein conformational changes in living cells by using designer binding proteins: application to the estrogen receptor. Proc.Natl.Acad.Sci.USA, 99, 2002
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2P49
| Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.4A resolution: native mono_1 crystal form | 分子名称: | ANTIBODY CAB-RN05, PHOSPHATE ION, Ribonuclease pancreatic | 著者 | Tereshko, V, Uysal, S, Margalef, K, Koide, A, Kossiakoff, A.A, Koide, S. | 登録日 | 2007-03-11 | 公開日 | 2007-08-28 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (1.38 Å) | 主引用文献 | Exploring the capacity of minimalist protein interfaces: interface energetics and affinity maturation to picomolar KD of a single-domain antibody with a flat paratope. J.Mol.Biol., 373, 2007
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2P4A
| X-ray structure of a camelid affinity matured single-domain vhh antibody fragment in complex with RNASE A | 分子名称: | ANTIBODY CAB-RN05, Ribonuclease pancreatic, SULFATE ION | 著者 | Tereshko, V, Koide, A, Uysal, S, Koide, S. | 登録日 | 2007-03-11 | 公開日 | 2007-08-28 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Exploring the capacity of minimalist protein interfaces: interface energetics and affinity maturation to picomolar KD of a single-domain antibody with a flat paratope. J.Mol.Biol., 373, 2007
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2QBW
| The crystal structure of PDZ-Fibronectin fusion protein | 分子名称: | PDZ-Fibronectin fusion protein, Polypeptide | 著者 | Huang, J, Makabe, K, Koide, A, Koide, S. | 登録日 | 2007-06-18 | 公開日 | 2008-04-22 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Design of protein function leaps by directed domain interface evolution. Proc.Natl.Acad.Sci.Usa, 105, 2008
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8EZG
| Monobody 12D1 bound to KRAS(G12D) | 分子名称: | GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | 著者 | Hattori, T, Glasser, E, Akkapeddi, P, Ketavarapu, G, Teng, K.W, Koide, A, Koide, S. | 登録日 | 2022-10-31 | 公開日 | 2023-07-19 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.52 Å) | 主引用文献 | Exploring switch II pocket conformation of KRAS(G12D) with mutant-selective monobody inhibitors. Proc.Natl.Acad.Sci.USA, 120, 2023
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8F0M
| Monobody 12D5 bound to KRAS(G12D) | 分子名称: | 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, ... | 著者 | Hattori, T, Glasser, E, Akkapeddi, P, Ketavarapu, G, Teng, K.W, Koide, A, Koide, S. | 登録日 | 2022-11-03 | 公開日 | 2023-07-19 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.44 Å) | 主引用文献 | Exploring switch II pocket conformation of KRAS(G12D) with mutant-selective monobody inhibitors. Proc.Natl.Acad.Sci.USA, 120, 2023
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2AF5
| 2.5A X-ray Structure of Engineered OspA protein | 分子名称: | Engineered Outer Surface Protein A (OspA) with the inserted two beta-hairpins | 著者 | Makabe, K, Mcelheny, D, Tereshko, V, Hilyard, A, Koide, A, Koide, S. | 登録日 | 2005-07-25 | 公開日 | 2006-08-01 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Atomic structures of peptide self-assembly mimics. Proc.Natl.Acad.Sci.Usa, 103, 2006
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7LO8
| NorA in complex with Fab36 | 分子名称: | Fab36 Heavy Chain, Fab36 Light Chain, Quinolone resistance protein NorA | 著者 | Brawley, D.N, Sauer, D.B, Song, J.M, Koide, A, Koide, S, Traaseth, N.J, Wang, D.N. | 登録日 | 2021-02-09 | 公開日 | 2022-04-20 | 最終更新日 | 2022-07-13 | 実験手法 | ELECTRON MICROSCOPY (3.16 Å) | 主引用文献 | Structural basis for inhibition of the drug efflux pump NorA from Staphylococcus aureus. Nat.Chem.Biol., 18, 2022
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7LO7
| NorA in complex with Fab25 | 分子名称: | Fab25 Heavy Chain, Fab25 Light Chain, Quinolone resistance protein NorA | 著者 | Brawley, D.N, Sauer, D.B, Song, J.M, Koide, A, Koide, S, Traaseth, N.J, Wang, D.N. | 登録日 | 2021-02-09 | 公開日 | 2022-04-20 | 最終更新日 | 2022-07-13 | 実験手法 | ELECTRON MICROSCOPY (3.74 Å) | 主引用文献 | Structural basis for inhibition of the drug efflux pump NorA from Staphylococcus aureus. Nat.Chem.Biol., 18, 2022
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5VG9
| Structure of the eukaryotic intramembrane Ras methyltransferase ICMT (isoprenylcysteine carboxyl methyltransferase) without a monobody | 分子名称: | Protein-S-isoprenylcysteine O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE | 著者 | Long, S.B, Diver, M.M, Pedi, L, Koide, A, Koide, S. | 登録日 | 2017-04-10 | 公開日 | 2018-01-17 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (4 Å) | 主引用文献 | Atomic structure of the eukaryotic intramembrane RAS methyltransferase ICMT. Nature, 553, 2018
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5V7P
| Atomic structure of the eukaryotic intramembrane Ras methyltransferase ICMT (isoprenylcysteine carboxyl methyltransferase), in complex with a monobody | 分子名称: | DECANE, Protein-S-isoprenylcysteine O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ... | 著者 | Long, S.B, Diver, M.M, Pedi, L, Koide, A, Koide, S. | 登録日 | 2017-03-20 | 公開日 | 2018-01-17 | 最終更新日 | 2024-03-06 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Atomic structure of the eukaryotic intramembrane RAS methyltransferase ICMT. Nature, 553, 2018
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2Z8G
| Aspergillus niger ATCC9642 isopullulanase complexed with isopanose | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose | 著者 | Mizuno, M, Koide, A, Yamamura, A, Akeboshi, H, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | 登録日 | 2007-09-05 | 公開日 | 2007-12-18 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49 J.Mol.Biol., 376, 2008
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4IOF
| Crystal structure analysis of Fab-bound human Insulin Degrading Enzyme (IDE) | 分子名称: | Fab-bound IDE, heavy chain, light chain, ... | 著者 | McCord, L.A, Liang, W.G, Hoey, R, Dowdell, E, Koide, A, Koide, S, Tang, W.J. | 登録日 | 2013-01-07 | 公開日 | 2013-07-24 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (3.353 Å) | 主引用文献 | Conformational states and recognition of amyloidogenic peptides of human insulin-degrading enzyme. Proc.Natl.Acad.Sci.USA, 110, 2013
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5A40
| Crystal structure of a dual topology fluoride ion channel. | 分子名称: | MERCURY (II) ION, MONOBODIES, PUTATIVE FLUORIDE ION TRANSPORTER CRCB | 著者 | Stockbridge, R.B, Kolmakova-Partensky, L, Shane, T, Koide, A, Koide, S, Miller, C, Newstead, S. | 登録日 | 2015-06-04 | 公開日 | 2015-09-02 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (3.6 Å) | 主引用文献 | Crystal Structures of a Double-Barrelled Fluoride Ion Channel. Nature, 525, 2015
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5A43
| Crystal structure of a dual topology fluoride ion channel. | 分子名称: | DECYL-BETA-D-MALTOPYRANOSIDE, FLUORIDE ION, MONOBODIES, ... | 著者 | Stockbridge, R.B, Kolmakova-Partensky, L, Shane, T, Koide, A, Koide, S, Miller, C, Newstead, S. | 登録日 | 2015-06-04 | 公開日 | 2015-09-02 | 最終更新日 | 2015-09-30 | 実験手法 | X-RAY DIFFRACTION (2.58 Å) | 主引用文献 | Crystal Structures of a Double-Barrelled Fluoride Ion Channel. Nature, 525, 2015
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8TTH
| NorA single mutant - D307N at pH 7.5 | 分子名称: | Heavy Chain of FabDA1 Variable Domain, Light Chain of FabDA1 Variable Domain, Quinolone resistance protein NorA | 著者 | Li, J.P, Li, Y, Koide, A, Kuang, H.H, Torres, V.J, Koide, S, Wang, D.N, Traaseth, N.J. | 登録日 | 2023-08-13 | 公開日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (3.54 Å) | 主引用文献 | NorA single mutant - D307N at pH 7.5 To Be Published
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8TTG
| NorA single mutant - E222Q at pH 7.5 | 分子名称: | FabDA1 CDRH3 loop, Quinolone resistance protein NorA | 著者 | Li, J.P, Li, Y, Koide, A, Kuang, H.H, Torres, V.J, Koide, S, Wang, D.N, Traaseth, N.J. | 登録日 | 2023-08-13 | 公開日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (3.35 Å) | 主引用文献 | NorA single mutant - E222Q at pH 7.5 To Be Published
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8TTF
| NorA double mutant - E222QD307N at pH 7.5 | 分子名称: | Heavy Chain of FabDA1 Variable Domain, Light Chain of FabDA1 Variable Domain, Quinolone resistance protein NorA | 著者 | Li, J.P, Li, Y, Koide, A, Kuang, H.H, Torres, V.J, Koide, S, Wang, D.N, Traaseth, N.J. | 登録日 | 2023-08-13 | 公開日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (3.61 Å) | 主引用文献 | NorA double mutant - E222QD307N at pH 7.5 To Be Published
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8TTE
| Protonated state of NorA at pH 5.0 | 分子名称: | FabDA1 CDRH3 loop, Quinolone resistance protein NorA | 著者 | Li, J.P, Li, Y, Koide, A, Kuang, H.H, Torres, V.J, Koide, S, Wang, D.N, Traaseth, N.J. | 登録日 | 2023-08-13 | 公開日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (3.26 Å) | 主引用文献 | Protonated state of NorA at pH 5.0 To Be Published
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2KIR
| Solution structure of a designer toxin, mokatoxin-1 | 分子名称: | Designer toxin | 著者 | Biancalana, M, Koide, A, Takacs, Z, Goldstein, S, Koide, S. | 登録日 | 2009-05-07 | 公開日 | 2009-12-29 | 最終更新日 | 2022-03-16 | 実験手法 | SOLUTION NMR | 主引用文献 | A designer ligand specific for Kv1.3 channels from a scorpion neurotoxin-based library. Proc.Natl.Acad.Sci.USA, 106, 2009
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5CWU
| Crystal structure of Chaetomium thermophilum Nup188 TAIL domain | 分子名称: | GLYCEROL, Nucleoporin NUP188 | 著者 | Stuwe, T, Bley, C.J, Thierbach, K, Petrovic, S, Schilbach, S, Mayo, D.J, Perriches, T, Rundlet, E.J, Jeon, Y.E, Collins, L.N, Lin, D.H, Paduch, M, Koide, A, Lu, V, Fischer, J, Hurt, E, Koide, S, Kossiakoff, A.A, Hoelz, A. | 登録日 | 2015-07-28 | 公開日 | 2015-09-16 | 最終更新日 | 2019-12-25 | 実験手法 | X-RAY DIFFRACTION (3.35 Å) | 主引用文献 | Architecture of the fungal nuclear pore inner ring complex. Science, 350, 2015
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5CWV
| Crystal structure of Chaetomium thermophilum Nup192 TAIL domain | 分子名称: | Nucleoporin NUP192 | 著者 | Stuwe, T, Bley, C.J, Thierbach, K, Petrovic, S, Schilbach, S, Mayo, D.J, Perriches, T, Rundlet, E.J, Jeon, Y.E, Collins, L.N, Lin, D.H, Paduch, M, Koide, A, Lu, V, Fischer, J, Hurt, E, Koide, S, Kossiakoff, A.A, Hoelz, A. | 登録日 | 2015-07-28 | 公開日 | 2015-09-16 | 最終更新日 | 2019-12-25 | 実験手法 | X-RAY DIFFRACTION (3.155 Å) | 主引用文献 | Architecture of the fungal nuclear pore inner ring complex. Science, 350, 2015
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5E95
| Crystal Structure of Mb(NS1)/H-Ras Complex | 分子名称: | GTPase HRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | 著者 | Eguchi, R.R, Sha, F, Gupta, A, Koide, A, Koide, S. | 登録日 | 2015-10-14 | 公開日 | 2016-11-02 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (1.402 Å) | 主引用文献 | Inhibition of RAS function through targeting an allosteric regulatory site. Nat. Chem. Biol., 13, 2017
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5CWW
| Crystal structure of the Chaetomium thermophilum heterotrimeric Nup82 NTD-Nup159 TAIL-Nup145N APD complex | 分子名称: | Nucleoporin NUP145N, Nucleoporin NUP159, Nucleoporin NUP82 | 著者 | Stuwe, T, Bley, C.J, Thierbach, K, Petrovic, S, Schilbach, S, Mayo, D.J, Perriches, T, Rundlet, E.J, Jeon, Y.E, Collins, L.N, Lin, D.H, Paduch, M, Koide, A, Lu, V, Fischer, J, Hurt, E, Koide, S, Kossiakoff, A.A, Hoelz, A. | 登録日 | 2015-07-28 | 公開日 | 2015-09-16 | 最終更新日 | 2024-03-06 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Architecture of the fungal nuclear pore inner ring complex. Science, 350, 2015
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