Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3CUE
DownloadVisualize
BU of 3cue by Molmil
Crystal structure of a TRAPP subassembly activating the Rab Ypt1p
分子名称: GTP-binding protein YPT1, PALMITIC ACID, Transport protein particle 18 kDa subunit, ...
著者Cai, Y, Reinisch, K.M.
登録日2008-04-16
公開日2008-07-08
最終更新日2012-03-21
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献The structural basis for activation of the Rab Ypt1p by the TRAPP membrane-tethering complexes.
Cell(Cambridge,Mass.), 133, 2008
4ZKI
DownloadVisualize
BU of 4zki by Molmil
The crystal structure of Histidine Kinase YycG with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Histidine kinase
著者Cai, Y.
登録日2015-04-30
公開日2016-05-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.401 Å)
主引用文献Conformational dynamics of the essential sensor histidine kinase WalK
Acta Crystallogr D Struct Biol, 73, 2017
4TU3
DownloadVisualize
BU of 4tu3 by Molmil
Crystal structure of yeast Sac1/Vps74 complex
分子名称: Phosphoinositide phosphatase SAC1, Vacuolar protein sorting-associated protein 74
著者Cai, Y, Horenkamp, F.A, Reinisch, K.R.
登録日2014-06-23
公開日2014-08-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.187 Å)
主引用文献Sac1-Vps74 structure reveals a mechanism to terminate phosphoinositide signaling in the Golgi apparatus.
J.Cell Biol., 206, 2014
1Q6X
DownloadVisualize
BU of 1q6x by Molmil
Crystal structure of rat choline acetyltransferase
分子名称: SODIUM ION, choline O-acetyltransferase
著者Cai, Y, Rodgers, D.W.
登録日2003-08-14
公開日2004-06-01
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Choline acetyltransferase structure reveals distribution of mutations that cause motor disorders.
Embo J., 23, 2004
4U7N
DownloadVisualize
BU of 4u7n by Molmil
Inactive structure of histidine kinase
分子名称: Histidine protein kinase sensor protein
著者Cai, Y, Hu, X, Sang, J.
登録日2014-07-31
公開日2015-09-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Conformational dynamics of the essential sensor histidine kinase WalK.
Acta Crystallogr D Struct Biol, 73, 2017
4U7O
DownloadVisualize
BU of 4u7o by Molmil
Active histidine kinase bound with ATP
分子名称: AMP PHOSPHORAMIDATE, Histidine protein kinase sensor protein
著者Cai, Y, Hu, X, Sang, J.
登録日2014-07-31
公開日2015-09-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.395 Å)
主引用文献Conformational dynamics of the essential sensor histidine kinase WalK.
Acta Crystallogr D Struct Biol, 73, 2017
5C93
DownloadVisualize
BU of 5c93 by Molmil
Histidine kinase with ATP
分子名称: Histidine kinase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SULFATE ION
著者Cai, Y.
登録日2015-06-26
公開日2016-07-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.518 Å)
主引用文献Conformational dynamics of the essential sensor histidine kinase WalK.
Acta Crystallogr D Struct Biol, 73, 2017
5CVV
DownloadVisualize
BU of 5cvv by Molmil
coniferyl alcohol bound monolignol 4-O-methyltransferase 9
分子名称: (Iso)eugenol O-methyltransferase, 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2-methoxyphenol, S-ADENOSYL-L-HOMOCYSTEINE
著者Cai, Y, Liu, C.-J.
登録日2015-07-27
公開日2015-09-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structure of coniferyl alcohol bound monolignol 4-O-methyltransferase 9 at 1.73 Angstroms resolution
To Be Published
5CVJ
DownloadVisualize
BU of 5cvj by Molmil
Monolignol 4-O-methyltransferase 5 - coniferyl alcohol
分子名称: (Iso)eugenol O-methyltransferase, 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2-methoxyphenol, NITRATE ION, ...
著者Cai, Y, Liu, C.-J.
登録日2015-07-27
公開日2015-09-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of coniferyl alcohol bound monolignol 4-O-methyltransferase at 1.68 Angstroms resolution
To Be Published
5CVU
DownloadVisualize
BU of 5cvu by Molmil
sinpyl alcohol bound monolignol 4-O-methyltransferase 5
分子名称: (Iso)eugenol O-methyltransferase, 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2,6-dimethoxyphenol, NITRATE ION, ...
著者Cai, Y, Liu, C.-J.
登録日2015-07-27
公開日2015-09-16
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of sinapyl alcohol bound monolignol 4-O-methyltransferase at 1.60 Angstroms resolution
To Be Published
6IX5
DownloadVisualize
BU of 6ix5 by Molmil
The structure of LepI complex with SAM and its substrate analogue
分子名称: 1,2-ETHANEDIOL, 4-hydroxy-3-[(2S,6E,8E)-2-methyldeca-6,8-dienoyl]-5-phenylpyridin-2(1H)-one, CHLORIDE ION, ...
著者Cai, Y, Ohashi, M, Hai, Y, Tang, Y, Zhou, J.
登録日2018-12-09
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for stereoselective dehydration and hydrogen-bonding catalysis by the SAM-dependent pericyclase LepI.
Nat.Chem., 11, 2019
6IX3
DownloadVisualize
BU of 6ix3 by Molmil
The structure of LepI complex with SAM
分子名称: CHLORIDE ION, O-methyltransferase lepI, S-ADENOSYLMETHIONINE
著者Cai, Y, Ohashi, M, Hai, Y, Tang, Y, Zhou, J.
登録日2018-12-09
公開日2019-07-17
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Structural basis for stereoselective dehydration and hydrogen-bonding catalysis by the SAM-dependent pericyclase LepI.
Nat.Chem., 11, 2019
6IX9
DownloadVisualize
BU of 6ix9 by Molmil
The structure of LepI C52A in complex with SAM and leporin C
分子名称: (6R,6aS,10S,10aR)-10-methyl-4-phenyl-6-[(1E)-prop-1-en-1-yl]-2,6,6a,7,8,9,10,10a-octahydro-1H-[2]benzopyrano[4,3-c]pyridin-1-one, CHLORIDE ION, GLYCEROL, ...
著者Cai, Y, Ohashi, M, Hai, Y, Tang, Y, Zhou, J.
登録日2018-12-09
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.776 Å)
主引用文献Structural basis for stereoselective dehydration and hydrogen-bonding catalysis by the SAM-dependent pericyclase LepI.
Nat.Chem., 11, 2019
6IX7
DownloadVisualize
BU of 6ix7 by Molmil
The structure of LepI C52A in complex with SAH and substrate analogue
分子名称: 1,2-ETHANEDIOL, 4-hydroxy-3-[(2S,6E,8E)-2-methyldeca-6,8-dienoyl]-5-phenylpyridin-2(1H)-one, CHLORIDE ION, ...
著者Cai, Y, Ohashi, M, Hai, Y, Tang, Y, Zhou, J.
登録日2018-12-09
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.835 Å)
主引用文献Structural basis for stereoselective dehydration and hydrogen-bonding catalysis by the SAM-dependent pericyclase LepI.
Nat.Chem., 11, 2019
6IX8
DownloadVisualize
BU of 6ix8 by Molmil
The structure of LepI C52A in complex with SAM and its substrate analogue
分子名称: (1R,2R,4aS,8S,8aR)-2,8-dimethyl-5'-phenyl-4a,5,6,7,8,8a-hexahydro-2H,2'H-spiro[naphthalene-1,3'-pyridine]-2',4'(1'H)-dione, 1,2-ETHANEDIOL, ACETATE ION, ...
著者Cai, Y, Ohashi, M, Hai, Y, Tang, Y, Zhou, J.
登録日2018-12-09
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.659 Å)
主引用文献Structural basis for stereoselective dehydration and hydrogen-bonding catalysis by the SAM-dependent pericyclase LepI.
Nat.Chem., 11, 2019
6N5V
DownloadVisualize
BU of 6n5v by Molmil
Crystal Structure of Strictosidine in complex with 1H-indole-4-ethanamine
分子名称: 2-(1H-indol-4-yl)ethan-1-amine, Strictosidine synthase
著者Cai, Y, Shao, N, Xie, H, Futamura, Y, Panjikar, S, Liu, H, Zhu, H, Osada, H, Zou, H.
登録日2018-11-22
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.549 Å)
主引用文献Crystal Structure of Strictosidine in complex with 1H-indole-4-ethanamine
to be published
7DJT
DownloadVisualize
BU of 7djt by Molmil
Human SARM1 inhibitory state bounded with inhibitor dHNN
分子名称: NAD(+) hydrolase SARM1, O3-methyl O5-(2-methylpropyl) 2,6-dimethyl-4-[2-(oxidanylamino)phenyl]pyridine-3,5-dicarboxylate
著者Cai, Y, Zhang, H.
登録日2020-11-21
公開日2021-05-19
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Permeant fluorescent probes visualize the activation of SARM1 and uncover an anti-neurodegenerative drug candidate.
Elife, 10, 2021
4I5S
DownloadVisualize
BU of 4i5s by Molmil
Structure and function of sensor histidine kinase
分子名称: Putative histidine kinase CovS; VicK-like protein
著者Cai, Y.
登録日2012-11-28
公開日2013-03-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Mechanistic insights revealed by the crystal structure of a histidine kinase with signal transducer and sensor domains
Plos Biol., 11, 2013
8GNJ
DownloadVisualize
BU of 8gnj by Molmil
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 2
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NAD(+) hydrolase SARM1, Nanobody-C6
著者Cai, Y, Zhang, H.
登録日2022-08-24
公開日2023-01-18
実験手法ELECTRON MICROSCOPY (3.78 Å)
主引用文献A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1.
Nat Commun, 13, 2022
8GQ5
DownloadVisualize
BU of 8gq5 by Molmil
Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
分子名称: NAD(+) hydrolase SARM1, Nanobody C6
著者Cai, Y, Zhang, H.
登録日2022-08-29
公開日2023-01-18
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1.
Nat Commun, 13, 2022
8GNI
DownloadVisualize
BU of 8gni by Molmil
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 1
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NAD(+) hydrolase SARM1, Nanobody C6
著者Cai, Y, Zhang, H.
登録日2022-08-24
公開日2023-01-18
実験手法ELECTRON MICROSCOPY (3.74 Å)
主引用文献A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1.
Nat Commun, 13, 2022
4GHT
DownloadVisualize
BU of 4ght by Molmil
Crystal structure of EV71 3C proteinase in complex with AG7088
分子名称: 3C proteinase, 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
著者Chen, C, Wu, C, Cai, Q, Li, N, Peng, X, Cai, Y, Yin, K, Chen, X, Wang, X, Zhang, R, Liu, L, Chen, S, Li, J, Lin, T.
登録日2012-08-08
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structures of Enterovirus 71 3C proteinase (strain E2004104-TW-CDC) and its complex with rupintrivir
Acta Crystallogr.,Sect.D, 69, 2013
3CPM
DownloadVisualize
BU of 3cpm by Molmil
plant peptide deformylase PDF1B crystal structure
分子名称: Peptide deformylase, chloroplast, SULFATE ION, ...
著者Rodgers, D.W, Houtz, R.L, Dirk, L.M.A, Schmidt, J.J, Cai, Y.
登録日2008-03-31
公開日2008-07-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Insights into the substrate specificity of plant peptide deformylase, an essential enzyme with potential for the development of novel biotechnology applications in agriculture
Biochem.J., 413, 2008
6UJV
DownloadVisualize
BU of 6ujv by Molmil
Model of the HIV-1 gp41 membrane-proximal external region, transmembrane domain and cytoplasmic tail (LLP2)
分子名称: Envelope glycoprotein GP41
著者Piai, A, Fu, Q, Cai, Y, Ghantous, F, Xiao, T, Shaik, M.M, Peng, H, Rits-Volloch, S, Liu, Z, Chen, W, Seaman, M.S, Chen, B, Chou, J.J.
登録日2019-10-03
公開日2020-05-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis of transmembrane coupling of the HIV-1 envelope glycoprotein.
Nat Commun, 11, 2020
7PP7
DownloadVisualize
BU of 7pp7 by Molmil
Thunberia alata 16:0-ACP desaturase
分子名称: Acyl-[acyl-carrier-protein] 6-desaturase, FE (III) ION
著者Guy, J.E, Whittle, E, Cai, Y, Chai, J, Lindqvist, Y, Shanklin, J.
登録日2021-09-13
公開日2021-12-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Regioselectivity mechanism of the Thunbergia alata Delta 6-16:0-acyl carrier protein desaturase.
Plant Physiol., 188, 2022

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon