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7SQV
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BU of 7sqv by Molmil
Goslar chimallin C1 localized reconstruction
分子名称: Chimallin
著者Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E.
登録日2021-11-06
公開日2022-07-27
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Architecture and self-assembly of the jumbo bacteriophage nuclear shell.
Nature, 608, 2022
7SQS
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BU of 7sqs by Molmil
201phi2-1 Chimallin C1 localized reconstruction
分子名称: Chimallin
著者Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E.
登録日2021-11-06
公開日2022-07-27
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Architecture and self-assembly of the jumbo bacteriophage nuclear shell.
Nature, 608, 2022
7SQT
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BU of 7sqt by Molmil
Goslar chimallin cubic (O, 24mer) assembly
分子名称: Chimallin
著者Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E.
登録日2021-11-06
公開日2022-07-27
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Architecture and self-assembly of the jumbo bacteriophage nuclear shell.
Nature, 608, 2022
7SQQ
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BU of 7sqq by Molmil
201Phi2-1 Chimallin Cubic (O, 24mer) assembly
分子名称: Chimallin
著者Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E.
登録日2021-11-06
公開日2022-07-27
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Architecture and self-assembly of the jumbo bacteriophage nuclear shell.
Nature, 608, 2022
7SQR
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BU of 7sqr by Molmil
201phi2-1 Chimallin localized tetramer reconstruction
分子名称: Chimallin
著者Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E.
登録日2021-11-06
公開日2022-07-27
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Architecture and self-assembly of the jumbo bacteriophage nuclear shell.
Nature, 608, 2022
7SQU
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BU of 7squ by Molmil
Goslar chimallin C4 tetramer localized reconstruction
分子名称: Chimallin
著者Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E.
登録日2021-11-06
公開日2022-07-27
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Architecture and self-assembly of the jumbo bacteriophage nuclear shell.
Nature, 608, 2022
7MC6
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BU of 7mc6 by Molmil
Crystal structure of the SARS-CoV-2 ExoN-nsp10 complex containing Mg2+ ion
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
著者Moeller, N.M, Shi, K, Banerjee, S, Yin, L, Aihara, H.
登録日2021-04-01
公開日2021-05-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.
Proc.Natl.Acad.Sci.USA, 119, 2022
7MC5
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BU of 7mc5 by Molmil
Crystal structure of the SARS-CoV-2 ExoN-nsp10 complex
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, L(+)-TARTARIC ACID, ...
著者Moeller, N.M, Shi, K, Banerjee, S, Yin, L, Aihara, H.
登録日2021-04-01
公開日2021-05-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.
Proc.Natl.Acad.Sci.USA, 119, 2022
6NFL
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BU of 6nfl by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G complexed with 2-HP
分子名称: 1,2-ETHANEDIOL, 1,3-diazinan-2-one, CHLORIDE ION, ...
著者Shi, K, Orellana, K, Aihara, H.
登録日2018-12-20
公開日2019-12-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.731 Å)
主引用文献Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv, 2, 2020
5WLY
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BU of 5wly by Molmil
E. coli LpxH- 8 mutations
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, FORMIC ACID, ...
著者Bohl, T.E, Aihara, H, Shi, K, Lee, J.K.
登録日2017-07-28
公開日2018-04-11
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The substrate-binding cap of the UDP-diacylglucosamine pyrophosphatase LpxH is highly flexible, enabling facile substrate binding and product release.
J. Biol. Chem., 293, 2018
6OHH
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BU of 6ohh by Molmil
Structure of EF1p2_mFAP2b bound to DFHBI
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, CALCIUM ION, EF1p2_mFAP2b
著者Doyle, L.A, Stoddard, B.L.
登録日2019-04-05
公開日2020-04-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Incorporation of sensing modalities into de novo designed fluorescence-activating proteins
Nat Commun, 12, 2021
3S8D
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BU of 3s8d by Molmil
Crystal Structure of RipA from Yersinia pestis
分子名称: Coenzyme A transferase
著者Torres, R, Goulding, C.W.
登録日2011-05-27
公開日2012-01-18
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Biochemical, structural and molecular dynamics analyses of the potential virulence factor RipA from Yersinia pestis.
Plos One, 6, 2011
6NFK
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BU of 6nfk by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G bound to iodide
分子名称: 1,2-ETHANEDIOL, DNA dC->dU-editing enzyme APOBEC-3B, IODIDE ION
著者Shi, K, Orellana, K, Aihara, H.
登録日2018-12-20
公開日2019-12-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv, 2, 2020
6NFM
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BU of 6nfm by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G
分子名称: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3B
著者Shi, K, Aihara, H.
登録日2018-12-20
公開日2019-12-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv, 2, 2020
8VAO
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BU of 8vao by Molmil
Simulation-driven design of prefusion stabilized SARS-CoV-2 spike S2 antigen
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S2
著者Zhou, L, McLellan, J.S.
登録日2023-12-11
公開日2024-07-10
最終更新日2024-09-04
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens
Nat Commun, 15, 2024
3ZRE
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BU of 3zre by Molmil
Reduced Thiol peroxidase (Tpx) from yersinia Pseudotuberculosis
分子名称: THIOL PEROXIDASE
著者Gabrielsen, M, Zetterstrom, C.E, Wang, D, Elofsson, M, Roe, A.J.
登録日2011-06-15
公開日2012-03-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural Characterisation of Tpx from Yersinia Pseudotuberculosis Reveals Insights Into the Binding of Salicylidene Acylhydrazide Compounds.
Plos One, 7, 2012
3ZRD
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BU of 3zrd by Molmil
Oxidised Thiol peroxidase (Tpx) from Yersinia pseudotuberculosis
分子名称: THIOL PEROXIDASE
著者Gabrielsen, M, Zetterstrom, C.E, Wang, D, Elofsson, M, Roe, A.J.
登録日2011-06-15
公開日2012-03-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural Characterisation of Tpx from Yersinia Pseudotuberculosis Reveals Insights Into the Binding of Salicylidene Acylhydrazide Compounds.
Plos One, 7, 2012
5IDO
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BU of 5ido by Molmil
RNA Editing TUTase 1 from Trypanosoma brucei in complex with UTP
分子名称: 3' terminal uridylyl transferase, MAGNESIUM ION, URIDINE 5'-TRIPHOSPHATE, ...
著者Thore, S, Rajappa, L.T.
登録日2016-02-24
公開日2016-10-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.
Nucleic Acids Res., 44, 2016
5KAL
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BU of 5kal by Molmil
Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU
分子名称: MAGNESIUM ION, RNA (5'-R(*UP*U)-3'), RNA uridylyltransferase 4, ...
著者Stagno, J.R, Luecke, H, Afasizhev, R.
登録日2016-06-01
公開日2016-10-26
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.
Nucleic Acids Res., 44, 2016
5I0Q
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BU of 5i0q by Molmil
Structure of human C4b-binding protein alpha chain CCP domains 1 and 2 in complex with the hypervariable region of mutant group A Streptococcus M2 (K65A, N66A) protein
分子名称: C4b-binding protein alpha chain, M protein, serotype 2.1
著者Buffalo, C.Z, Bahn-Suh, A.J, Ghosh, P.
登録日2016-02-04
公開日2016-07-20
最終更新日2016-10-26
実験手法X-RAY DIFFRACTION (2.293 Å)
主引用文献Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.
Nat Microbiol, 1, 2016
3QLI
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BU of 3qli by Molmil
Crystal Structure of RipA from Yersinia pestis
分子名称: ACETATE ION, Coenzyme A transferase
著者Torres, R, Goulding, C.W.
登録日2011-02-02
公開日2012-01-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Biochemical, structural and molecular dynamics analyses of the potential virulence factor RipA from Yersinia pestis.
Plos One, 6, 2011
3QLK
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BU of 3qlk by Molmil
Crystal Structure of RipA from Yersinia pestis
分子名称: Coenzyme A transferase
著者Torres, R, Goulding, C.W.
登録日2011-02-02
公開日2012-01-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Biochemical, structural and molecular dynamics analyses of the potential virulence factor RipA from Yersinia pestis.
Plos One, 6, 2011
5HZP
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BU of 5hzp by Molmil
Structure of human C4b-binding protein alpha chain CCP domains 1 and 2 in complex with the hypervariable region of group A Streptococcus M49 protein.
分子名称: C4b-binding protein alpha chain, M protein, serotype 49, ...
著者Buffalo, C.Z, Bahn-Suh, A.J, Ghosh, P.
登録日2016-02-02
公開日2016-07-20
最終更新日2019-12-11
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.
Nat Microbiol, 1, 2016
5HYP
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BU of 5hyp by Molmil
Structure of human C4b-binding protein alpha cain CCP domains 1 and 2 in complex with the hypervariable region of group A Streptococcus M28 protein
分子名称: C4b-binding protein alpha chain, M28 protein
著者Buffalo, C.Z, Bahn-Suh, A.J, Ghosh, P.
登録日2016-02-01
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.024 Å)
主引用文献Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.
Nat Microbiol, 1, 2016
5HYT
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BU of 5hyt by Molmil
Structure of human C4b-binidng protein alpha chain CCP domains 1 and 2 in complex with the hypervariable region of group A Streptococcus M22 protein
分子名称: C4b-binding protein alpha chain, Precursor to Protein Sir22
著者Buffalo, C.Z, Bahn-Suh, A.J, Ghosh, P.
登録日2016-02-01
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.
Nat Microbiol, 1, 2016

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