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6WTX
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BU of 6wtx by Molmil
Structure of VcINDY in complex with terephthalate
分子名称: DASS family sodium-coupled anion symporter, SODIUM ION, terephthalic acid
著者Sauer, D.B, Marden, J.J, Wang, D.N.
登録日2020-05-04
公開日2020-09-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.92 Å)
主引用文献Structural basis for the reaction cycle of DASS dicarboxylate transporters.
Elife, 9, 2020
6WU3
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BU of 6wu3 by Molmil
Structure of VcINDY-Na+ in amphipol
分子名称: VcINDY
著者Sauer, D.B, Marden, J.J, Song, J.M, Wang, D.N.
登録日2020-05-04
公開日2020-09-16
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Structural basis for the reaction cycle of DASS dicarboxylate transporters.
Elife, 9, 2020
6WU1
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BU of 6wu1 by Molmil
Structure of apo LaINDY
分子名称: DASS family sodium-coupled anion symporter, DECANE, HEXANE, ...
著者Sauer, D.B, Marden, J.J, Cocco, N.C, Song, J.M, Wang, D.N, New York Consortium on Membrane Protein Structure (NYCOMPS)
登録日2020-05-04
公開日2020-09-16
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Structural basis for the reaction cycle of DASS dicarboxylate transporters.
Elife, 9, 2020
8G9Q
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BU of 8g9q by Molmil
Tricomplex of Compound-1, KRAS G12C, and CypA
分子名称: GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Tomlinson, A.C.A, Chen, A, Knox, J.E, Yano, J.K.
登録日2023-02-21
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Chemical remodeling of a cellular chaperone to target the active state of mutant KRAS.
Science, 381, 2023
8G9P
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BU of 8g9p by Molmil
Tricomplex of RMC-4998, KRAS G12C, and CypA
分子名称: (2S)-2-{(5S)-7-[(2E)-4-(dimethylamino)-4-methylpent-2-enoyl]-1-oxo-2,7-diazaspiro[4.4]nonan-2-yl}-N-[(1P,8S,10R,14S,21M)-22-ethyl-21-{2-[(1S)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]-3-methylbutanamide (non-preferred name), CHLORIDE ION, GTPase KRas, ...
著者Tomlinson, A.C.A, Saldajeno-Concar, M, Knox, J.E, Yano, J.K.
登録日2023-02-21
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Chemical remodeling of a cellular chaperone to target the active state of mutant KRAS.
Science, 381, 2023
3AJ6
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BU of 3aj6 by Molmil
HA1 (HA33) mutant F179I of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, Main hemagglutinin component
著者Nakamura, T, Tonozuka, T, Sato, R, Oguma, K, Nishikawa, A.
登録日2010-05-24
公開日2011-06-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin
Arch.Biochem.Biophys., 512, 2011
3AJ5
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BU of 3aj5 by Molmil
HA1 (HA33) subcomponent of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, Main hemagglutinin component
著者Nakamura, T, Tonozuka, T, Sato, R, Oguma, K, Nishikawa, A.
登録日2010-05-24
公開日2011-06-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin
Arch.Biochem.Biophys., 512, 2011
3CSG
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BU of 3csg by Molmil
Crystal Structure of Monobody YS1(MBP-74)/Maltose Binding Protein Fusion Complex
分子名称: Maltose-binding protein Monobody YS1 Fusion
著者Gilbreth, R.N, Koide, S.
登録日2008-04-09
公開日2008-07-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces
J.Mol.Biol., 381, 2008
3CSB
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BU of 3csb by Molmil
Crystal Structure of Monobody YSX1/Maltose Binding Protein Fusion Complex
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
著者Gilbreth, R.N, Koide, S.
登録日2008-04-09
公開日2008-07-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces
J.Mol.Biol., 381, 2008
8EPA
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BU of 8epa by Molmil
Structure of interleukin receptor common gamma chain (IL2Rgamma) in complex with two antibodies
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Cytokine receptor common subunit gamma, REGN7257 Fab heavy chain, ...
著者Franklin, M.C, Romero Hernandez, A.
登録日2022-10-05
公開日2023-01-25
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Blocking common gamma chain cytokine signaling ameliorates T cell-mediated pathogenesis in disease models.
Sci Transl Med, 15, 2023
8ONV
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BU of 8onv by Molmil
KRAS-G13D in complex with BI-2493
分子名称: (7~{S})-2'-azanyl-3-[2-[(2~{S})-2-methylpiperazin-1-yl]pyrimidin-4-yl]spiro[5,6-dihydro-4~{H}-1,2-benzoxazole-7,4'-6,7-dihydro-5~{H}-1-benzothiophene]-3'-carbonitrile, 1,2-ETHANEDIOL, GTPase KRas, ...
著者Boettcher, J, Herdeis, L.
登録日2023-04-04
公開日2023-06-07
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Pan-KRAS inhibitor disables oncogenic signalling and tumour growth.
Nature, 619, 2023
7PUA
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BU of 7pua by Molmil
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
分子名称: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
著者Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
登録日2021-09-29
公開日2022-03-02
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PUB
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BU of 7pub by Molmil
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
分子名称: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
著者Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
登録日2021-09-29
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
5ECJ
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BU of 5ecj by Molmil
Crystal structure of monobody Mb(S4) bound to Prdm14 in complex with Mtgr1
分子名称: Monobody Mb(S4), PR domain zinc finger protein 14,Protein CBFA2T2
著者Gupta, A, Koide, S.
登録日2015-10-20
公開日2015-12-02
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献ETO family protein Mtgr1 mediates Prdm14 functions in stem cell maintenance and primordial germ cell formation.
Elife, 4, 2015
7SFX
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BU of 7sfx by Molmil
10A1 Fab in complex with CD99 peptide
分子名称: 10A1 Fab heavy chain, 10A1 Fab light chain, CD99 antigen peptide
著者Romero, L.A, Hattori, T, Koide, S.
登録日2021-10-04
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献High-valency Anti-CD99 Antibodies Toward the Treatment of T Cell Acute Lymphoblastic Leukemia.
J.Mol.Biol., 434, 2021
7TVJ
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BU of 7tvj by Molmil
Crystal Structure of Monobody Mb(SHP2PTP_13)/SHP2 PTP Domain Complex
分子名称: CITRATE ANION, Mb(SHP2PTP_13), Tyrosine-protein phosphatase non-receptor type 11
著者Sha, F, Koide, S.
登録日2022-02-05
公開日2023-02-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Monobody Inhibitor Selective to the Phosphatase Domain of SHP2 and its Use as a Probe for Quantifying SHP2 Allosteric Regulation.
J.Mol.Biol., 435, 2023
5WOB
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BU of 5wob by Molmil
Crystal Structure Analysis of Fab1-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Insulin
分子名称: IDE-bound Fab heavy chain, IDE-bound Fab light chain, Insulin, ...
著者McCord, L.A, Liang, W.G, Farcasanu, M, Wang, A.G, Koide, S, Tang, W.J.
登録日2017-08-01
公開日2018-04-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.95 Å)
主引用文献Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme.
Elife, 7, 2018
6BYN
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BU of 6byn by Molmil
Crystal structure of WDR5-Mb(S4) monobody complex
分子名称: WD repeat-containing protein 5, WDR5-binding Monobody, Mb(S4)
著者Gupta, A, Koide, S.
登録日2017-12-21
公開日2018-07-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Facile target validation in an animal model with intracellularly expressed monobodies.
Nat. Chem. Biol., 14, 2018
5CWS
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BU of 5cws by Molmil
Crystal structure of the intact Chaetomium thermophilum Nsp1-Nup49-Nup57 channel nucleoporin heterotrimer bound to its Nic96 nuclear pore complex attachment site
分子名称: Nucleoporin NIC96, Nucleoporin NSP1, Nucleoporin NUP49, ...
著者Bley, C.J, Petrovic, S, Paduch, M, Lu, V, Kossiakoff, A.A, Hoelz, A.
登録日2015-07-28
公開日2015-10-14
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (3.77 Å)
主引用文献Architecture of the fungal nuclear pore inner ring complex.
Science, 350, 2015
5KVM
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BU of 5kvm by Molmil
Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adhesion G-protein coupled receptor G1, ...
著者Salzman, G.S, Ding, C, Koide, S, Arac, D.
登録日2016-07-14
公開日2016-09-28
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.449 Å)
主引用文献Structural Basis for Regulation of GPR56/ADGRG1 by Its Alternatively Spliced Extracellular Domains.
Neuron, 91, 2016
7UQ2
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BU of 7uq2 by Molmil
Vs.4 from T4 phage in complex with cGAMP
分子名称: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, CALCIUM ION, Vs.4
著者Jenson, J.M, Chen, Z.J.
登録日2022-04-18
公開日2023-02-08
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Ubiquitin-like conjugation by bacterial cGAS enhances anti-phage defence.
Nature, 616, 2023
4TZC
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BU of 4tzc by Molmil
Crystal Structure of Murine Cereblon in Complex with Thalidomide
分子名称: Protein cereblon, S-Thalidomide, SULFATE ION, ...
著者Chamberlain, P.P, Pagarigan, B, Delker, S, Leon, B.
登録日2014-07-10
公開日2014-08-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Structural Basis for Responsiveness to Thalidomide-Analog Drugs Defined by the Crystal Structure of the Human Cereblon:DDB1:Lenalidomide Complex
to be published
5CWT
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BU of 5cwt by Molmil
Crystal structure of Chaetomium thermophilum Nup57
分子名称: Nucleoporin NUP57
著者Bley, C.J, Hoelz, A.
登録日2015-07-28
公開日2015-09-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Architecture of the fungal nuclear pore inner ring complex.
Science, 350, 2015
6CPG
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BU of 6cpg by Molmil
Structure of dephosphorylated Aurora A (122-403) in complex with inhibiting monobody and AT9283 in an inactive conformation
分子名称: 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea, Aurora kinase A, Monobody
著者Otten, R, Kutter, S, Zorba, A, Padua, R.A.P, Koide, A, Koide, S, Kern, D.
登録日2018-03-13
公開日2018-06-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Dynamics of human protein kinase Aurora A linked to drug selectivity.
Elife, 7, 2018
6C83
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BU of 6c83 by Molmil
Structure of Aurora A (122-403) bound to inhibitory Monobody Mb2 and AMPPCP
分子名称: Aurora kinase A, Mb2 Monobody, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Hoemberger, M, Kutter, S, Zorba, A, Nguyen, V, Shohei, A, Shohei, K, Kern, D.
登録日2018-01-24
公開日2019-02-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Allosteric modulation of a human protein kinase with monobodies.
Proc.Natl.Acad.Sci.USA, 116, 2019

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