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7SSF
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BU of 7ssf by Molmil
Light harvesting phycobiliprotein HaPE560 from the cryptophyte Hemiselmis andersenii CCMP644
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, DiCys-(15,16)-Dihydrobiliverdin, ...
著者Rathbone, H.W, Michie, K.A, Laos, A.L, Curmi, P.M.G.
登録日2021-11-10
公開日2023-10-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Molecular dissection of the soluble photosynthetic antenna from the cryptophyte alga Hemiselmis andersenii
Commun Biol, 2023
9EN6
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Crystal structure of RNA G2C4 repeats - native model pH 6.5
分子名称: MAGNESIUM ION, RNA (5'-R(*GP*GP*CP*CP*CP*C)-3')
著者Mateja-Pluta, M, Kiliszek, A.
登録日2024-03-12
公開日2024-05-01
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (0.918 Å)
主引用文献Antisense RNA C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms a triplex-like structure and binds small synthetic ligand.
Nucleic Acids Res., 52, 2024
7E5V
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BU of 7e5v by Molmil
Crystal structure of Phm7 in complex with inhibitor
分子名称: Diels-Alderase, GLYCEROL, SULFATE ION, ...
著者Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
登録日2021-02-20
公開日2021-06-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021
7E5U
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BU of 7e5u by Molmil
Crystal structure of Phm7
分子名称: CHLORIDE ION, Diels-Alderase, GLYCEROL, ...
著者Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
登録日2021-02-20
公開日2021-06-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021
7E5T
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BU of 7e5t by Molmil
Crystal structure of Fsa2
分子名称: Diels-Alderase fsa2, ETHANOL, PENTAETHYLENE GLYCOL, ...
著者Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
登録日2021-02-20
公開日2021-06-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.16977525 Å)
主引用文献Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021
6M04
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BU of 6m04 by Molmil
Structure of the human homo-hexameric LRRC8D channel at 4.36 Angstroms
分子名称: Volume-regulated anion channel subunit LRRC8D
著者Nakamura, R, Kasuya, G, Yokoyama, T, Shirouzu, M, Ishitani, R, Nureki, O.
登録日2020-02-20
公開日2020-06-17
実験手法ELECTRON MICROSCOPY (4.36 Å)
主引用文献Cryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation.
Commun Biol, 3, 2020
5X2V
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BU of 5x2v by Molmil
Crystal structure of Pseudomonas putida methionine gamma-lyase wild type without sulfate ion
分子名称: L-methionine gamma-lyase
著者Shiba, T, Sato, D, Harada, S.
登録日2017-02-02
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2Y
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Crystal structure of Pseudomonas putida methionine gamma-lyase C116H mutant without sulfate ion
分子名称: L-methionine gamma-lyase
著者Shiba, T, Sato, D, Harada, S.
登録日2017-02-02
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2W
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Crystal structure of Pseudomonas putida methionine gamma-lyase wild type with L-methionine intermediates
分子名称: (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid, L-methionine gamma-lyase
著者Shiba, T, Sato, D, Harada, S.
登録日2017-02-02
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2Z
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BU of 5x2z by Molmil
Crystal structure of Pseudomonas putida methionine gamma-lyase C116H mutant with L-methionine intermediates
分子名称: (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid, L-methionine gamma-lyase
著者Shiba, T, Sato, D, Harada, S.
登録日2017-02-02
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X30
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BU of 5x30 by Molmil
Crystal structure of Pseudomonas putida methionine gamma-lyase C116H mutant with L-homocysteine intermediates.
分子名称: (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid, (2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-sulfanyl-butanoic acid, 2-AMINO-4-MERCAPTO-BUTYRIC ACID, ...
著者Shiba, T, Sato, D, Harada, S.
登録日2017-02-02
公開日2017-04-12
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
1LMT
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BU of 1lmt by Molmil
STRUCTURE OF A CONFORMATIONALLY CONSTRAINED ARG-GLY-ASP SEQUENCE INSERTED INTO HUMAN LYSOZYME
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, HUMAN LYSOZYME
著者Matsushima, M, Song, H.
登録日1995-01-13
公開日1995-03-31
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of a conformationally constrained Arg-Gly-Asp sequence inserted into human lysozyme.
J.Biol.Chem., 270, 1995
1UML
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BU of 1uml by Molmil
Crystal structure of adenosine deaminase complexed with a potent inhibitor FR233624
分子名称: 1-((1R)-1-(HYDROXYMETHYL)-3-{6-[(3-PHENYLPROPANOYL)AMINO]-1H-INDOL-1-YL}PROPYL)-1H-IMIDAZOLE-4-CARBOXAMIDE, Adenosine deaminase, ZINC ION
著者Kinoshita, T.
登録日2003-10-03
公開日2004-09-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
6CEZ
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BU of 6cez by Molmil
Crystal Structure of Rabbit Anti-HIV-1 gp120 V2 Fab 16C2 in complex with V2 peptide ConB
分子名称: HIV-1 gp120 V2 Peptide Con B, Heavy chain of Fab fragment of rabbit anti-HIV1 gp120 V2 mAb 16C2, Light chain of Fab fragment of rabbit anti-HIV1 gp120 V2 mAb 16C2
著者Kong, X, Pan, R.
登録日2018-02-13
公開日2018-09-12
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.399 Å)
主引用文献Select gp120 V2 domain specific antibodies derived from HIV and SIV infection and vaccination inhibit gp120 binding to alpha 4 beta 7.
PLoS Pathog., 14, 2018
1NF1
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BU of 1nf1 by Molmil
THE GAP RELATED DOMAIN OF NEUROFIBROMIN
分子名称: PROTEIN (NEUROFIBROMIN)
著者Scheffzek, K, Ahmadian, M.R, Wiesmueller, L, Kabsch, W, Stege, P, Schmitz, F, Wittinghofer, A.
登録日1998-07-08
公開日1999-07-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural analysis of the GAP-related domain from neurofibromin and its implications.
EMBO J., 17, 1998
1JMZ
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BU of 1jmz by Molmil
crystal structure of a quinohemoprotein amine dehydrogenase from pseudomonas putida with inhibitor
分子名称: Amine Dehydrogenase, HEME C, NICKEL (II) ION, ...
著者Satoh, A, Miyahara, I, Hirotsu, K.
登録日2001-07-20
公開日2002-01-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of quinohemoprotein amine dehydrogenase from Pseudomonas putida. Identification of a novel quinone cofactor encaged by multiple thioether cross-bridges.
J.Biol.Chem., 277, 2002
7XQP
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BU of 7xqp by Molmil
PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Zhang, S, Tang, K.L, Li, X.Y, Wang, W.D, Yan, Q.J, Shen, L.L, Kuang, T.Y, Han, G.Y, Shen, J.R, Zhang, X.
登録日2022-05-08
公開日2023-04-26
最終更新日2023-06-07
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献Structural insights into a unique PSI-LHCI-LHCII-Lhcb9 supercomplex from moss Physcomitrium patens.
Nat.Plants, 9, 2023
1JMX
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crystal structure of a quinohemoprotein amine dehydrogenase from pseudomonas putida
分子名称: Amine Dehydrogenase, HEME C, NICKEL (II) ION
著者Satoh, A, Miyahara, I, Hirotsu, K.
登録日2001-07-20
公開日2002-01-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of quinohemoprotein amine dehydrogenase from Pseudomonas putida. Identification of a novel quinone cofactor encaged by multiple thioether cross-bridges.
J.Biol.Chem., 277, 2002
1QM8
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BU of 1qm8 by Molmil
Structure of Bacteriorhodopsin at 100 K
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
著者Takeda, K, Matsui, Y, Sato, H, Hino, T, Kanamori, E, Okumura, H, Yamane, T, Kamiya, N, Kouyama, T.
登録日1999-09-22
公開日2000-08-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Novel Three-Dimensional Crystal of Bacteriorhodopsin Obtained by Successive Fusion of the Vesicular Assemblies.
J.Mol.Biol., 283, 1998
7VXG
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BU of 7vxg by Molmil
Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor TK-453
分子名称: 6-[4-(aminomethyl)-4-methyl-piperidin-1-yl]-3-[2,3-bis(chloranyl)phenyl]sulfanyl-pyrazin-2-amine, Tyrosine-protein phosphatase non-receptor type 11
著者Li, T.H, Guo, H.T, Ji, X.Y.
登録日2021-11-12
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献SHP2 allosteric inhibitor TK-453 alleviates psoriasis-like skin inflammation in mice via inhibition of IL-23/Th17 axis.
Iscience, 25, 2022
5NI9
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BU of 5ni9 by Molmil
Crystal structure of HLA-DRB1*04:01 with the alpha-enolase peptide 326-340
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, Alpha-enolase, ...
著者Gerstner, C, Dubnovitsky, A.
登録日2017-03-23
公開日2018-06-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Memory T cells specific to citrullinated alpha-enolase are enriched in the rheumatic joint.
J. Autoimmun., 92, 2018
5NIG
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BU of 5nig by Molmil
Crystal structure of HLA-DRB1*04:01 with modified alpha-enolase peptide 326-340 (arginine 327 to citrulline)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Alpha-enolase, HLA class II histocompatibility antigen, ...
著者Gerstner, C, Dubnovitsky, A.
登録日2017-03-24
公開日2018-06-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Memory T cells specific to citrullinated alpha-enolase are enriched in the rheumatic joint.
J. Autoimmun., 92, 2018
2FK5
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BU of 2fk5 by Molmil
Crystal structure of l-fuculose-1-phosphate aldolase from Thermus thermophilus HB8
分子名称: CHLORIDE ION, SULFATE ION, fuculose-1-phosphate aldolase
著者Jeyakanthan, J, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-01-04
公開日2007-01-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Purification, crystallization and preliminary X-ray crystallographic study of the L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8
Acta Crystallogr.,Sect.F, 61, 2005
2D0W
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BU of 2d0w by Molmil
Crystal structure of cytochrome cL from Hyphomicrobium denitrificans
分子名称: PROTOPORPHYRIN IX CONTAINING FE, ZINC ION, cytochrome cL
著者Nojiri, M, Hira, D, Yamaguchi, K, Suzuki, S.
登録日2005-08-10
公開日2006-08-10
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Crystal structures of cytochrome c(L) and methanol dehydrogenase from Hyphomicrobium denitrificans: structural and mechanistic insights into interactions between the two proteins
Biochemistry, 45, 2006
8DAF
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Human SF-1 LBD bound to synthetic agonist 6N-10CA and bacterial phospholipid
分子名称: 10-[(3aR,6S,6aR)-3-phenyl-3a-(1-phenylethenyl)-6-(sulfamoylamino)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid (non-preferred name), DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Nuclear receptor coactivator 2, ...
著者D'Agostino, E.H, Cato, M.L, Ortlund, E.A.
登録日2022-06-13
公開日2023-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Comparison of activity, structure, and dynamics of SF-1 and LRH-1 complexed with small molecule modulators.
J.Biol.Chem., 299, 2023

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