Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8R1D
DownloadVisualize
BU of 8r1d by Molmil
SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, SD1-3 Fab Heavy Chain, SD1-3 Fab Light Chain, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
登録日2023-11-01
公開日2024-03-13
最終更新日2024-04-10
実験手法ELECTRON MICROSCOPY (2.37 Å)
主引用文献The SARS-CoV-2 neutralizing antibody response to SD1 and its evasion by BA.2.86.
Nat Commun, 15, 2024
8BCZ
DownloadVisualize
BU of 8bcz by Molmil
SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
分子名称: BA.2-23 heavy chain, BA.2-23 light chain, BA.2-36 heavy chain, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
登録日2022-10-17
公開日2023-03-22
最終更新日2023-04-12
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Rapid escape of new SARS-CoV-2 Omicron variants from BA.2-directed antibody responses.
Cell Rep, 42, 2023
8BBO
DownloadVisualize
BU of 8bbo by Molmil
SARS-CoV-2 Delta-RBD complexed with BA.2-36 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, IGH@ protein, Immunoglobulin kappa light chain, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2022-10-14
公開日2023-03-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Rapid escape of new SARS-CoV-2 Omicron variants from BA.2-directed antibody responses.
Cell Rep, 42, 2023
6N7P
DownloadVisualize
BU of 6n7p by Molmil
S. cerevisiae spliceosomal E complex (UBC4)
分子名称: 56 kDa U1 small nuclear ribonucleoprotein component, Nuclear cap-binding protein complex subunit 1, Nuclear cap-binding protein subunit 2, ...
著者Liu, S, Li, X, Zhou, Z.H, Zhao, R.
登録日2018-11-27
公開日2019-09-18
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献A unified mechanism for intron and exon definition and back-splicing.
Nature, 573, 2019
6N7R
DownloadVisualize
BU of 6n7r by Molmil
Saccharomyces cerevisiae spliceosomal E complex (ACT1)
分子名称: 56 kDa U1 small nuclear ribonucleoprotein component, ACT1 pre-mRNA, Pre-mRNA-processing factor 39, ...
著者Liu, S, Li, X, Zhou, Z.H, Zhao, R.
登録日2018-11-28
公開日2019-09-18
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献A unified mechanism for intron and exon definition and back-splicing.
Nature, 573, 2019
8CIN
DownloadVisualize
BU of 8cin by Molmil
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BA.4/5-5 fab HEAVY CHAIN, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I, Fry, E.E.
登録日2023-02-10
公開日2024-02-21
最終更新日2024-04-10
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献The SARS-CoV-2 neutralizing antibody response to SD1 and its evasion by BA.2.86.
Nat Commun, 15, 2024
4P59
DownloadVisualize
BU of 4p59 by Molmil
HER3 extracellular domain in complex with Fab fragment of MOR09825
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MOR09825 Fab fragment heavy chain, ...
著者Sprague, E.R.
登録日2014-03-15
公開日2014-04-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献An antibody that locks HER3 in the inactive conformation inhibits tumor growth driven by HER2 or neuregulin.
Cancer Res., 73, 2013
6QN3
DownloadVisualize
BU of 6qn3 by Molmil
Structure of the Glutamine II Riboswitch
分子名称: BROMIDE ION, GLUTAMINE, MAGNESIUM ION, ...
著者Huang, L, Lilley, D.M.J.
登録日2019-02-08
公開日2019-06-12
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and ligand binding of the glutamine-II riboswitch.
Nucleic Acids Res., 47, 2019
8QZR
DownloadVisualize
BU of 8qzr by Molmil
SARS-CoV-2 delta RBD complexed with BA.4/5-9 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BA.4/5-9 heavy chain, BA.4/5-9 light chain, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-10-29
公開日2024-04-03
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.77 Å)
主引用文献Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection.
Nat Commun, 15, 2024
8QRG
DownloadVisualize
BU of 8qrg by Molmil
SARS-CoV-2 delta RBD complexed with XBB-2 Fab and NbC1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, NbC1, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-10-07
公開日2024-05-08
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 2024
8QTD
DownloadVisualize
BU of 8qtd by Molmil
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
分子名称: Spike glycoprotein,Fibritin, XBB-7 fab heavy chain, XBB-7 fab light chain
著者Ren, J, Duyvesteyn, H.M.E, Stuart, D.I.
登録日2023-10-12
公開日2024-05-08
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 2024
8QSQ
DownloadVisualize
BU of 8qsq by Molmil
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S2'
著者Ren, J, Stuart, D.I, Duyvesteyn, H.M.E.
登録日2023-10-11
公開日2024-05-08
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 2024
8QRF
DownloadVisualize
BU of 8qrf by Molmil
SARS-CoV-2 delta RBD complexed with XBB-6 and beta-49 Fabs
分子名称: Beta-49 heavy chain, Beta-49 light chain, Spike protein S1, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-10-06
公開日2024-05-08
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 2024
8R80
DownloadVisualize
BU of 8r80 by Molmil
SARS-CoV-2 Delta RBD in complex with XBB-9 Fab and an anti-Fab nanobody
分子名称: Spike protein S1, XBB-9 Fab heavy chain, XBB-9 Fab light chain, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-11-27
公開日2024-05-08
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (4.03 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 2024
8R8K
DownloadVisualize
BU of 8r8k by Molmil
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
分子名称: Spike glycoprotein, XBB-4 Fab Heavy chain, XBB-4 Fab Light chain
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
登録日2023-11-29
公開日2024-05-08
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 2024
8CBE
DownloadVisualize
BU of 8cbe by Molmil
SARS-CoV-2 Delta-RBD complexed with BA.4/5-2 and Beta-49 Fabs
分子名称: BA.4/5-2 heavy chain, BA.4/5-2 light chain, Beta-49 heavy chain, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-01-25
公開日2024-02-07
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.16 Å)
主引用文献Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection.
Nat Commun, 15, 2024
8CBD
DownloadVisualize
BU of 8cbd by Molmil
SARS-CoV-2 Delta-RBD complexed with BA.4/5-1 and EY6A Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BA.4/5-1 heavy chain, BA.4/5-1 light chain, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-01-25
公開日2024-02-07
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.52 Å)
主引用文献Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection.
Nat Commun, 15, 2024
8CBF
DownloadVisualize
BU of 8cbf by Molmil
SARS-CoV-2 Delta-RBD complexed with Omi-42 and Beta-49 Fabs
分子名称: Beta-49 heavy chain, Beta-49 light chain, CHLORIDE ION, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-01-25
公開日2024-02-07
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection.
Nat Commun, 15, 2024
8CMA
DownloadVisualize
BU of 8cma by Molmil
SARS-CoV-2 Delta-RBD complexed with BA.4/5-35 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BA.4/5-35 heavy chain, BA.4/5-35 light chain, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-02-18
公開日2024-02-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.29 Å)
主引用文献Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection.
Nat Commun, 15, 2024
7LEW
DownloadVisualize
BU of 7lew by Molmil
Crystal structure of UBE2G2 in complex with the UBE2G2-binding region of AUP1
分子名称: Lipid droplet-regulating VLDL assembly factor AUP1, Ubiquitin-conjugating enzyme E2 G2
著者Liang, Y.-H, Smith, C.E, Tsai, Y.C, Weissman, A.M, Ji, X.
登録日2021-01-15
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.736 Å)
主引用文献A structurally conserved site in AUP1 binds the E2 enzyme UBE2G2 and is essential for ER-associated degradation.
Plos Biol., 19, 2021
6K5T
DownloadVisualize
BU of 6k5t by Molmil
Complex of SUMO1 and phosphorylated hcmv protein IE2
分子名称: 12-mer from Viral transcription factor IE2, Small ubiquitin-related modifier 1
著者Tripathi, V, Chatterjee, K.S.
登録日2019-05-31
公開日2019-08-07
最終更新日2019-12-25
実験手法SOLUTION NMR
主引用文献Casein kinase-2-mediated phosphorylation increases the SUMO-dependent activity of the cytomegalovirus transactivator IE2.
J.Biol.Chem., 294, 2019
4CSO
DownloadVisualize
BU of 4cso by Molmil
The structure of OrfY from Thermoproteus tenax
分子名称: ORFY PROTEIN, TRANSCRIPTION FACTOR
著者Zeth, K, Hagemann, A, Siebers, B, Martin, J, Lupas, A.N.
登録日2014-03-09
公開日2014-03-19
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10.
Proteins, 82 Suppl 2, 2014
6MWN
DownloadVisualize
BU of 6mwn by Molmil
Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx
分子名称: Fab HAVx Heavy Chain, Fab HAVx Light Chain, HAV dV RNA (92-MER)
著者Koirala, D, Shao, Y, Piccirilli, J.A.
登録日2018-10-29
公開日2019-08-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.838 Å)
主引用文献A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites.
Nat Commun, 10, 2019
6BNP
DownloadVisualize
BU of 6bnp by Molmil
CryoEM structure of MyosinVI-actin complex in the rigor (nucleotide-free) state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Gurel, P.S, Alushin, G.A.
登録日2017-11-17
公開日2018-01-10
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Cryo-EM structures reveal specialization at the myosin VI-actin interface and a mechanism of force sensitivity.
Elife, 6, 2017
6BNQ
DownloadVisualize
BU of 6bnq by Molmil
CryoEM structure of Myosin VI-Actin complex in the ADP state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Gurel, P.G, Alushin, G.M.
登録日2017-11-17
公開日2018-01-10
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (5.5 Å)
主引用文献Cryo-EM structures reveal specialization at the myosin VI-actin interface and a mechanism of force sensitivity.
Elife, 6, 2017

220472

件を2024-05-29に公開中

PDB statisticsPDBj update infoContact PDBjnumon