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5JA4
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BU of 5ja4 by Molmil
Crystal structure of human TONSL and MCM2 HBDs binding to a histone H3-H4 tetramer
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA replication licensing factor MCM2, GLYCEROL, ...
著者Huang, H, Patel, D.
登録日2016-04-11
公開日2016-06-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.424 Å)
主引用文献H4K20me0 marks post-replicative chromatin and recruits the TONSL-MMS22L DNA repair complex.
Nature, 534, 2016
7XFA
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BU of 7xfa by Molmil
Structure of human Galectin-3 CRD in complex with monosaccharide inhibitor
分子名称: (2~{S},3~{R},4~{R},5~{R},6~{R})-4-[4-[4-chloranyl-3,5-bis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-[2-[5-chloranyl-2-(trifluoromethyl)phenyl]-5-methyl-1,2,4-triazol-3-yl]-6-(hydroxymethyl)oxane-3,5-diol, Galectin-3
著者Shukla, J, Raman, S, Ghosh, K.
登録日2022-04-01
公開日2022-10-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Identification of Monosaccharide Derivatives as Potent, Selective, and Orally Bioavailable Inhibitors of Human and Mouse Galectin-3.
J.Med.Chem., 65, 2022
5K7C
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BU of 5k7c by Molmil
The native structure of native pistol ribozyme
分子名称: DNA/RNA 11-MER, MAGNESIUM ION, RNA 47-MER
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7D
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BU of 5k7d by Molmil
The structure of native pistol ribozyme, bound to Iridium
分子名称: DNA/RNA 11-MER, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5KDM
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BU of 5kdm by Molmil
Crystal structure of EBV tegument protein BNRF1 in complex with histone chaperone DAXX and histones H3.3-H4
分子名称: Death domain-associated protein 6, Histone H3.3, Histone H4, ...
著者Huang, H, Patel, D.
登録日2016-06-08
公開日2016-09-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural basis underlying viral hijacking of a histone chaperone complex.
Nat Commun, 7, 2016
9BI4
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BU of 9bi4 by Molmil
cryo EM structure of dsDNA bound Mre11-Rad50 complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA repair protein RAD50, Double-strand break repair protein MRE11, ...
著者Yu, Y, Patel, D.J.
登録日2024-04-22
公開日2025-01-15
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure guided functional analysis of the S. cerevisiae Mre11 complex.
Res Sq, 2024
4RGF
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BU of 4rgf by Molmil
Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+
分子名称: MAGNESIUM ION, MANGANESE (II) ION, POTASSIUM ION, ...
著者Ren, A, Rajashankar, K.R, Simanshu, D, Patel, D.
登録日2014-09-30
公開日2014-12-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.2008 Å)
主引用文献In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
4RGE
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BU of 4rge by Molmil
Crystal structure of the in-line aligned env22 twister ribozyme
分子名称: MAGNESIUM ION, env22 twister ribozyme
著者Ren, A, Rajashankar, K.R, Simanshu, D, Patel, D.
登録日2014-09-30
公開日2014-12-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
4QUC
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BU of 4quc by Molmil
Crystal structure of chromodomain of Rhino
分子名称: RE36324p
著者Li, S, Patel, D.J.
登録日2014-07-10
公開日2014-08-20
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.502 Å)
主引用文献Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing.
Genes Dev., 28, 2014
4QUF
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BU of 4quf by Molmil
crystal structure of chromodomain of Rhino with H3K9me3
分子名称: H3(1-15)K9me3 peptide, RE36324p
著者Li, S, Patel, D.J.
登録日2014-07-10
公開日2014-08-20
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing.
Genes Dev., 28, 2014
9CMT
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BU of 9cmt by Molmil
The crystal structure of HP1alpha CSD-Agno complex
分子名称: 3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-5-CARBOXYLIC ACID, Agnoprotein, Chromobox protein homolog 5
著者Goldgur, Y, Xie, W, Schaefer, U, Tarakhovsky, A, Patel, D, Chen, S.
登録日2024-07-15
公開日2025-05-28
実験手法X-RAY DIFFRACTION (3.17 Å)
主引用文献Chromatin mimicry by human JC virus.
Biorxiv, 2024
1SI2
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BU of 1si2 by Molmil
Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex of deoxynucleotide overhang
分子名称: 5'-R(*CP*GP*UP*GP*AP*CP*U)-D(P*CP*T)-3', Eukaryotic translation initiation factor 2C 1
著者Ye, K, Ma, J.B, Patel, D.
登録日2004-02-26
公開日2004-05-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004
1SI3
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BU of 1si3 by Molmil
Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex
分子名称: 5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3', Eukaryotic translation initiation factor 2C 1
著者Ye, K, Ma, J.B, Patel, D.
登録日2004-02-27
公開日2004-05-25
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004
1UT5
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BU of 1ut5 by Molmil
Divalent metal ions (manganese) bound to T5 5'-exonuclease
分子名称: EXODEOXYRIBONUCLEASE, MANGANESE (II) ION
著者Ceska, T.A, Sayers, J.R, Suck, D.
登録日2003-12-04
公開日2004-02-05
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Roles of Divalent Metal Ions in Flap Endonuclease-Substrate Interactions
Nat.Struct.Mol.Biol., 11, 2004
1UT8
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BU of 1ut8 by Molmil
Divalent metal ions (zinc) bound to T5 5'-exonuclease
分子名称: EXODEOXYRIBONUCLEASE, ZINC ION
著者Ceska, T.A, Sayers, J.R, Suck, D.
登録日2003-12-04
公開日2004-02-05
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Roles of Divalent Metal Ions in Flap Endonuclease-Substrate Interactions
Nat.Struct.Mol.Biol., 11, 2004
5XQ2
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BU of 5xq2 by Molmil
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 5A6 on the guide strand
分子名称: DNA (5'-D(*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(*AP*GP*T)-3'), DNA (5'-D(P*TP*GP*AP*AP*GP*AP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3'), ...
著者Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, D, Wang, Y.
登録日2017-06-06
公開日2017-10-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.33 Å)
主引用文献Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes
Nucleic Acids Res., 45, 2017
7DF6
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BU of 7df6 by Molmil
Mouse Galectin-3 CRD in complex with novel tetrahydropyran-based thiodisaccharide mimic inhibitor
分子名称: (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-5-methoxy-6-[(3R,4R,5S)-4-oxidanyl-5-(4-pyrimidin-5-yl-1,2,3-triazol-1-yl)oxan-3-yl]sulfanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-3-ol, Galectin-3
著者Ghosh, K, Kumar, A.
登録日2020-11-06
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Synthesis, Structure-Activity Relationships, and In Vivo Evaluation of Novel Tetrahydropyran-Based Thiodisaccharide Mimics as Galectin-3 Inhibitors.
J.Med.Chem., 64, 2021
7DF5
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BU of 7df5 by Molmil
Human Galectin-3 CRD in complex with novel tetrahydropyran-based thiodisaccharide mimic inhibitor
分子名称: (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-5-methoxy-6-[(3R,4R,5S)-4-oxidanyl-5-(4-pyrimidin-5-yl-1,2,3-triazol-1-yl)oxan-3-yl]sulfanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-3-ol, CHLORIDE ION, Galectin-3, ...
著者Ghosh, K, Kumar, A.
登録日2020-11-06
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Synthesis, Structure-Activity Relationships, and In Vivo Evaluation of Novel Tetrahydropyran-Based Thiodisaccharide Mimics as Galectin-3 Inhibitors.
J.Med.Chem., 64, 2021
7C31
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BU of 7c31 by Molmil
Crystal structure of the grapevine defensin VvK1
分子名称: Knot1 domain-containing protein
著者Chen, M.W, Chang, S.C, Chandy, K.G, Luo, D.
登録日2020-05-10
公開日2020-09-16
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Modulation of Lymphocyte Potassium Channel KV1.3 by Membrane-Penetrating, Joint-Targeting Immunomodulatory Plant Defensin.
Acs Pharmacol Transl Sci, 3, 2020
7C2P
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BU of 7c2p by Molmil
Structure of Egk Peptide
分子名称: Plant defensing Egk
著者El Sahili, A.
登録日2020-05-08
公開日2020-09-09
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Modulation of Lymphocyte Potassium Channel KV1.3 by Membrane-Penetrating, Joint-Targeting Immunomodulatory Plant Defensin.
Acs Pharmacol Transl Sci, 3, 2020
3FT8
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BU of 3ft8 by Molmil
Structure of HSP90 bound with a noval fragment.
分子名称: (5E,7S)-2-amino-7-(4-fluoro-2-pyridin-3-ylphenyl)-4-methyl-7,8-dihydroquinazolin-5(6H)-one oxime, Heat shock protein HSP 90-alpha
著者Barker, J.B, Cheng, R.K.Y, Palan, S, Felicetti, B.
登録日2009-01-12
公開日2009-06-30
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Fragment-based identification of Hsp90 inhibitors.
Chemmedchem, 4, 2009
3FT5
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BU of 3ft5 by Molmil
Structure of HSP90 bound with a novel fragment
分子名称: 4-methyl-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-2-amine, Heat shock protein HSP 90-alpha
著者Barker, J.B, Mather, O, Cheng, R.K.Y, Palan, S, Felicetti, B.
登録日2009-01-12
公開日2009-05-05
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Fragment-based Identification of Hsp90 Inhibitors.
Chemmedchem, 4, 2009
5AN3
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BU of 5an3 by Molmil
Structure of an Sgt1-Skp1 Complex
分子名称: SGT1, SUPPRESSOR OF KINETOCHORE PROTEIN 1
著者Willhoft, O, Vaughan, C.K.
登録日2015-09-03
公開日2017-02-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献The crystal structure of the Sgt1-Skp1 complex: the link between Hsp90 and both SCF E3 ubiquitin ligases and kinetochores.
Sci Rep, 7, 2017
8BOU
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BU of 8bou by Molmil
Crystal structure of Blautia producta GH94
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, ...
著者Levy, C.W.
登録日2022-11-15
公開日2023-11-29
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Blautia producta is a competent degrader among human gut Firmicutes for utilizing dietary beta mixed linkage glucan
To Be Published
2LA5
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BU of 2la5 by Molmil
RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide
分子名称: Fragile X mental retardation 1 protein, RNA (36-MER)
著者Phan, A, Kuryavyi, V, Darnell, J, Serganov, A, Majumdar, A, Ilin, S, Darnell, R, Patel, D.
登録日2011-03-03
公開日2011-06-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction.
Nat.Struct.Mol.Biol., 18, 2011

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