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219D
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BU of 219d by Molmil
DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, James, T.L.
Deposit date:1995-07-25
Release date:1995-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints.
Biochemistry, 34, 1995
1E68
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BU of 1e68 by Molmil
Solution structure of bacteriocin AS-48
Descriptor: AS-48 PROTEIN
Authors:Gonzalez, C, Langdon, G, Bruix, M, Galvez, A, Valdivia, E, Maqueda, M, Rico, M.
Deposit date:2000-08-09
Release date:2000-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Bacteriocin as-48, a Microbial Cyclic Polypeptide Structurally and Functionally Related to Mammalian Nk-Lysin
Proc.Natl.Acad.Sci.USA, 97, 2000
1H20
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BU of 1h20 by Molmil
Solution structure of the potato carboxypeptidase inhibitor
Descriptor: METALLOCARBOXYPEPTIDASE INHIBITOR
Authors:Gonzalez, C, Neira, J.L, Ventura, S, Bronsoms, S, Aviles, F.X, Rico, M.
Deposit date:2002-07-29
Release date:2003-05-09
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structure and Dynamics of the Potato Carboxypeptidase Inhibitor by 1H and 15N NMR.
Proteins, 50, 2003
2KP4
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BU of 2kp4 by Molmil
Structure of 2'F-ANA/RNA hybrid duplex
Descriptor: DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L)P*(TAF)P*(GFL)P*(GFL))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, Martin-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G.
Deposit date:2009-10-06
Release date:2010-02-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.
Nucleic Acids Res., 38, 2010
2KP3
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BU of 2kp3 by Molmil
Structure of ANA-RNA hybrid duplex
Descriptor: RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O)P*(UAR)P*(GAO)P*(GAO))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, Martn-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G.
Deposit date:2009-10-06
Release date:2010-02-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.
Nucleic Acids Res., 38, 2010
7NEJ
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BU of 7nej by Molmil
Solution structure of DNA:RNA hybrid duplex
Descriptor: DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
Authors:Cabrero, C, Martin-Pintado, N, Mazzini, S, Gargallo, R, Eritja, R, Avino, A, Gonzalez, C.
Deposit date:2021-02-04
Release date:2021-04-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.
Chemistry, 2021
7NBL
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BU of 7nbl by Molmil
Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
Descriptor: DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
Authors:Cabrero, C, Martin-Pintado, N, Mazzini, S, Gargallo, R, Eritja, R, Avino, A, Gonzalez, C.
Deposit date:2021-01-27
Release date:2021-04-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.
Chemistry, 2021
2AAS
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BU of 2aas by Molmil
HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF RIBONUCLEASE A IN SOLUTION BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor: RIBONUCLEASE A
Authors:Santoro, J, Gonzalez, C, Bruix, M, Neira, J.L, Nieto, J.L, Herranz, J, Rico, M.
Deposit date:1992-11-20
Release date:1994-01-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy.
J.Mol.Biol., 229, 1993
2K90
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BU of 2k90 by Molmil
Dimeric solution structure of the DNA loop d(TGCTTCGT)
Descriptor: 5'-D(*TP*GP*CP*TP*TP*CP*GP*T)-3'
Authors:Viladoms, J, Escaja, N, Frieden, M, Gomez-Pinto, I, Pedroso, E, Gonzalez, C.
Deposit date:2008-09-29
Release date:2009-04-28
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Self-association of short DNA loops through minor groove C:G:G:C tetrads.
Nucleic Acids Res., 37, 2009
2K97
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BU of 2k97 by Molmil
Dimeric solution structure of the cyclic octamer d(pCGCTCCGT)
Descriptor: 5'-D(P*CP*GP*CP*TP*CP*CP*GP*T)-3'
Authors:Viladoms, J, Escaja, N, Frieden, M, Gomez-Pinto, I, Pedroso, E, Gonzalez, C.
Deposit date:2008-09-30
Release date:2009-04-28
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Self-association of short DNA loops through minor groove C:G:G:C tetrads.
Nucleic Acids Res., 37, 2009
2LE2
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BU of 2le2 by Molmil
Novel dimeric structure of phage phi29-encoded protein p56: Insights into Uracil-DNA glycosylase inhibition
Descriptor: P56
Authors:Asensio, J, Perez-Lago, L, Lazaro, J.M, Gonzalez, C, Serrano-Heras, G, Salas, M.
Deposit date:2011-06-06
Release date:2011-09-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Novel dimeric structure of phage 29-encoded protein p56: insights into uracil-DNA glycosylase inhibition.
Nucleic Acids Res., 39, 2011
2LSX
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BU of 2lsx by Molmil
Solution structure of a mini i-motif
Descriptor: DNA (5'-D(P*TP*CP*GP*TP*TP*TP*CP*GP*TP*T)-3')
Authors:Escaja, N, Viladoms, J, Garavis, M, Villasante, A, Pedroso, E, Gonzalez, C.
Deposit date:2012-05-09
Release date:2012-10-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A minimal i-motif stabilized by minor groove G:T:G:T tetrads.
Nucleic Acids Res., 40, 2012
2CMN
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BU of 2cmn by Molmil
A Proximal Arginine Residue in the Switching Mechanism of the FixL Oxygen Sensor
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL
Authors:Gilles-Gonzalez, M.-A, Caceres, A.I, Silva Sousa, E.H, Tomchick, D.R, Brautigam, C.A, Gonzalez, C, Machius, M.
Deposit date:2006-05-11
Release date:2007-05-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Proximal Arginine R206 Participates in Switching of the Bradyrhizobium Japonicum Fixl Oxygen Sensor
J.Mol.Biol., 360, 2006
8OFC
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BU of 8ofc by Molmil
Structure of an i-motif domain with the cytosine analog 1,3-diaza-2-oxophenoxacione (tC) at neutral pH
Descriptor: DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3')
Authors:Mir, B, Serrano-Chacon, I, Terrazas, M, Gandioso, A, Garavis, M, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2023-03-15
Release date:2024-02-07
Last modified:2024-04-24
Method:SOLUTION NMR
Cite:Site-specific incorporation of a fluorescent nucleobase analog enhances i-motif stability and allows monitoring of i-motif folding inside cells.
Nucleic Acids Res., 52, 2024
1N96
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BU of 1n96 by Molmil
DIMERIC SOLUTION STRUCTURE OF THE CYCLIC OCTAMER CD(CGCTCATT)
Descriptor: CYCLIC OLIGONUCLEOTIDE D(CGCTCATT)
Authors:Escaja, N, Gelpi, J.L, Orozco, M, Rico, M, Pedroso, E, Gonzalez, C.
Deposit date:2002-11-22
Release date:2003-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Four-stranded DNA structure stabilized by a novel G:C:A:T tetrad.
J.Am.Chem.Soc., 125, 2003
8QDU
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BU of 8qdu by Molmil
Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions
Descriptor: DNA (5'-D(*(FC)P*GP*(FC)P*GP*(FC)P*G)-3')
Authors:El-Khoury, R, Cabrero, C, Movilla, S, Thorpe, J.D, Roman, M, Orozco, M, Gonzalez, C, Damha, M.J.
Deposit date:2023-08-30
Release date:2024-06-26
Last modified:2024-07-31
Method:SOLUTION NMR
Cite:Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions.
Nucleic Acids Res., 52, 2024
1TRL
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BU of 1trl by Molmil
NMR SOLUTION STRUCTURE OF THE C-TERMINAL FRAGMENT 255-316 OF THERMOLYSIN: A DIMER FORMED BY SUBUNITS HAVING THE NATIVE STRUCTURE
Descriptor: THERMOLYSIN FRAGMENT 255 - 316
Authors:Rico, M, Jimenez, M.A, Gonzalez, C, De Filippis, V, Fontana, A.
Deposit date:1994-09-02
Release date:1995-02-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR solution structure of the C-terminal fragment 255-316 of thermolysin: a dimer formed by subunits having the native structure.
Biochemistry, 33, 1994
2KSS
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BU of 2kss by Molmil
NMR structure of Myxococcus xanthus antirepressor CarS1
Descriptor: Carotenogenesis protein carS
Authors:Jimenez, M, Gonzalez, C, Padmanabhan, S, Leon, E, Navarro-Aviles, G, Elias-Arnanz, M.
Deposit date:2010-01-13
Release date:2010-05-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix.
Nucleic Acids Res., 38, 2010
2C3E
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BU of 2c3e by Molmil
The bovine mitochondrial ADP-ATP carrier
Descriptor: ADP/ATP TRANSLOCASE 1, CARDIOLIPIN, Carboxyatractyloside
Authors:Nury, H, Dahout-Gonzalez, C, Trezeguet, V, Lauquin, G, Brandolin, G, Pebay-Peyroula, E.
Deposit date:2005-10-06
Release date:2005-10-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Lipid-Mediated Interactions between Mitochondrial Adp/ATP Carrier Monomers.
FEBS Lett., 579, 2005
2WAD
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BU of 2wad by Molmil
PENICILLIN-BINDING PROTEIN 2B (PBP-2B) FROM STREPTOCOCCUS PNEUMONIAE (STRAIN 5204)
Descriptor: PENICILLIN-BINDING PROTEIN 2B, ZINC ION
Authors:Contreras-Martel, C, Dahout-Gonzalez, C, Dos-Santos-Martins, A, Kotnik, M, Dessen, A.
Deposit date:2009-02-05
Release date:2009-02-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Pbp Active Site Flexibility as the Key Mechanism for Beta-Lactam Resistance in Pneumococci
J.Mol.Biol., 387, 2009
2WAE
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BU of 2wae by Molmil
PENICILLIN-BINDING PROTEIN 2B (PBP-2B) FROM STREPTOCOCCUS PNEUMONIAE (STRAIN 5204)
Descriptor: PENICILLIN-BINDING PROTEIN 2B, ZINC ION
Authors:Contreras-Martel, C, Dahout-Gonzalez, C, Dos-Santos-Martins, A, Kotnik, M, Dessen, A.
Deposit date:2009-02-05
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Pbp Active Site Flexibility as the Key Mechanism for Beta-Lactam Resistance in Pneumococci
J.Mol.Biol., 387, 2009
2WAF
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BU of 2waf by Molmil
PENICILLIN-BINDING PROTEIN 2B (PBP-2B) FROM STREPTOCOCCUS PNEUMONIAE (STRAIN R6)
Descriptor: CHLORIDE ION, PENICILLIN-BINDING PROTEIN 2B
Authors:Contreras-Martel, C, Dahout-Gonzalez, C, Dos-Santos-Martins, A, Kotnik, M, Dessen, A.
Deposit date:2009-02-05
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Pbp Active Site Flexibility as the Key Mechanism for Beta-Lactam Resistance in Pneumococci
J.Mol.Biol., 387, 2009
1OKC
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BU of 1okc by Molmil
structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 3-LAURYLAMIDO-N,N'-DIMETHYLPROPYLAMINOXYDE, ADP, ...
Authors:Pebay-Peyroula, E, Dahout-Gonzalez, C, Kahn, R, Trezeguet, V, Lauquin, G.J.-M, Brandolin, G.
Deposit date:2003-07-21
Release date:2003-11-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Mitochondrial Adp/ATP Carrier in Complex with Carboxyatractyloside
Nature, 426, 2003
3GWH
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BU of 3gwh by Molmil
Crystallographic Ab Initio protein solution far below atomic resolution
Descriptor: PHOSPHATE ION, Transcriptional antiterminator (BglG family)
Authors:Rodriguez, D.D, Grosse, C, Himmel, S, Gonzalez, C, Becker, S, Sheldrick, G.M, Uson, I.
Deposit date:2009-04-01
Release date:2010-04-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystallographic ab initio protein structure solution below atomic resolution
Nat.Methods, 6, 2009
7NBK
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BU of 7nbk by Molmil
Solution structure of DNA duplex containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
Descriptor: DNA (5'-D(*CP*GP*TP*AP*(FFC)P*G)-3')
Authors:Cabrero, C, Martin-Pintado, N, Mazzini, S, Gargallo, R, Eritja, R, Avino, A, Gonzalez, C.
Deposit date:2021-01-27
Release date:2021-04-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.
Chemistry, 2021

 

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