Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8T8P
DownloadVisualize
BU of 8t8p by Molmil
33-mer FliF MS-ring from Salmonella
Descriptor: Flagellar M-ring protein
Authors:Singh, P.K, Iverson, T.M.
Deposit date:2023-06-23
Release date:2024-02-28
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:CryoEM structures reveal how the bacterial flagellum rotates and switches direction.
Nat Microbiol, 9, 2024
8T8O
DownloadVisualize
BU of 8t8o by Molmil
CCW Flagellar Switch Complex - FliF, FliG, FliM, and FliN forming 34-mer C-ring from Salmonella
Descriptor: Flagellar M-ring protein, Flagellar motor switch protein FliG, Flagellar motor switch protein FliN, ...
Authors:Singh, P.K, Iverson, T.M.
Deposit date:2023-06-22
Release date:2024-02-28
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (4 Å)
Cite:CryoEM structures reveal how the bacterial flagellum rotates and switches direction.
Nat Microbiol, 9, 2024
6IX6
DownloadVisualize
BU of 6ix6 by Molmil
Crystal structure of the complex of peptidyl-tRNA hydrolase with N-propanol at 1.43 A resolution
Descriptor: N-PROPANOL, Peptidyl-tRNA hydrolase
Authors:Viswanathan, V, Sharma, P, Chaudhary, A, Sharma, S, Singh, T.P.
Deposit date:2018-12-09
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Crystal structure of the complex of peptidyl-tRNA hydrolase with N-propanol at 1.43 A resolution
To Be Published
6IYE
DownloadVisualize
BU of 6iye by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with 12% PEG 1500 at 1.55 A resolution.
Descriptor: Peptidyl-tRNA hydrolase
Authors:Viswanathan, V, Sharma, P, Chaudhary, A, Sharma, S, Singh, T.P.
Deposit date:2018-12-15
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with 12% PEG 1500 at 1.55 A resolution.
To Be Published
6IVV
DownloadVisualize
BU of 6ivv by Molmil
Structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with multiple surface binding regions at 1.26A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Viswanathan, V, Sharma, P, Chaudhary, A, Sharma, S, Singh, T.P.
Deposit date:2018-12-04
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structure of peptide t-RNA hydrolase from Acinetobacter baumannii with multiple surface binding sites at 1.26 Angstrom resolution.
To Be Published
7Z8O
DownloadVisualize
BU of 7z8o by Molmil
Crystal structure of SARS-CoV-2 S RBD in complex with a stapled peptide
Descriptor: 2,4,6-tris(chloromethyl)-1,3,5-triazine, GLYCEROL, Spike protein S1, ...
Authors:Brear, P, Chen, L, Gaynor, K, Harman, M, Dods, R, Hyvonen, M.
Deposit date:2022-03-18
Release date:2023-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Multivalent bicyclic peptides are an effective antiviral modality that can potently inhibit SARS-CoV-2.
Nat Commun, 14, 2023
8AAA
DownloadVisualize
BU of 8aaa by Molmil
Crystal structure of SARS-CoV-2 S RBD in complex with a stapled peptide
Descriptor: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one, Spike protein S1, Stapled peptide
Authors:Brear, P, Chen, L, Gaynor, K, Harman, M, Dods, R, Hyvonen, M.
Deposit date:2022-06-30
Release date:2023-06-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Multivalent bicyclic peptides are an effective antiviral modality that can potently inhibit SARS-CoV-2.
Nat Commun, 14, 2023
4WET
DownloadVisualize
BU of 4wet by Molmil
Crystal structure of E.Coli DsbA in complex with compound 16
Descriptor: 1,2-ETHANEDIOL, N-({4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-thiazol-5-yl}carbonyl)-L-tyrosine, SODIUM ION, ...
Authors:Ilyichova, O.V, Scanlon, M.J.
Deposit date:2014-09-11
Release date:2015-01-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Application of Fragment-Based Screening to the Design of Inhibitors of Escherichia coli DsbA.
Angew.Chem.Int.Ed.Engl., 54, 2015
7VQI
DownloadVisualize
BU of 7vqi by Molmil
Solution NMR structure of Pseudomonas aeruginosa Lipopolysaccharide (LPS) Bicelle bound VR18 Antimicrobial Peptide
Descriptor: VAL-ALA-ARG-GLY-TRP-GLY-ARG-LYS-CYS-PRO-LEU-PHE-GLY-LYS-ASN-LYS-SER-ARG (VR18)
Authors:Mohid, S.A, Bhunia, A.
Deposit date:2021-10-20
Release date:2022-01-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A rationally designed synthetic antimicrobial peptide against Pseudomonas-associated corneal keratitis: Structure-function correlation.
Biophys.Chem., 286, 2022
7Y3U
DownloadVisualize
BU of 7y3u by Molmil
Crystal structure of the complex of Lactoperoxidase with Nitric oxide at 2.50A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CALCIUM ION, ...
Authors:Singh, P.K, Viswanathan, V, Ahmad, N, Rani, C, Sharma, P, Sharma, S, Singh, T.P.
Deposit date:2022-06-13
Release date:2022-06-29
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the complex of Lactoperoxidase with Nitric oxide at 2.50A resolution
To Be Published
7TBA
DownloadVisualize
BU of 7tba by Molmil
Pentraxin - ligand complex
Descriptor: C-reactive protein, CALCIUM ION, [3-(dibutylamino)propyl]phosphonic acid
Authors:Shing, K.S.C.T, Morton, C.J, Parker, M.W.
Deposit date:2021-12-21
Release date:2022-10-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:A novel phosphocholine-mimetic inhibits a pro-inflammatory conformational change in C-reactive protein.
Embo Mol Med, 15, 2023
7VQH
DownloadVisualize
BU of 7vqh by Molmil
Solution NMR structure of Escherichia coli Total Lipid Extract Bicelle bound VR18 Antimicrobial Peptide
Descriptor: VAL-ALA-ARG-GLY-TRP-GLY-ARG-LYS-CYS-PRO-LEU-PHE-GLY-LYS-ASN-LYS-SER-ARG (VR18)
Authors:Mohid, S.A, Bhunia, A.
Deposit date:2021-10-20
Release date:2022-01-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A rationally designed synthetic antimicrobial peptide against Pseudomonas-associated corneal keratitis: Structure-function correlation.
Biophys.Chem., 286, 2022
6AP7
DownloadVisualize
BU of 6ap7 by Molmil
Crystal Structure of DAD2 in complex with 2-(2-methyl-3-nitroanilino)benzoic acid
Descriptor: 2-[(2-methyl-3-nitrophenyl)amino]benzoic acid, GLYCEROL, Probable strigolactone esterase DAD2
Authors:Hamiaux, C.
Deposit date:2017-08-17
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Inhibition of strigolactone receptors byN-phenylanthranilic acid derivatives: Structural and functional insights.
J. Biol. Chem., 293, 2018
6AP6
DownloadVisualize
BU of 6ap6 by Molmil
Crystal Structure of DAD2 in complex with tolfenamic acid
Descriptor: 2-[(3-chloro-2-methylphenyl)amino]benzoic acid, Probable strigolactone esterase DAD2
Authors:Hamiaux, C.
Deposit date:2017-08-17
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Inhibition of strigolactone receptors byN-phenylanthranilic acid derivatives: Structural and functional insights.
J. Biol. Chem., 293, 2018
6AP8
DownloadVisualize
BU of 6ap8 by Molmil
Crystal Structure of rice D14 bound to 2-(2-methyl-3-nitroanilino)benzoic acid
Descriptor: 2-[(2-methyl-3-nitrophenyl)amino]benzoic acid, GLYCEROL, Strigolactone esterase D14
Authors:Hamiaux, C.
Deposit date:2017-08-17
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Inhibition of strigolactone receptors byN-phenylanthranilic acid derivatives: Structural and functional insights.
J. Biol. Chem., 293, 2018
3H93
DownloadVisualize
BU of 3h93 by Molmil
Crystal Structure of Pseudomonas aeruginosa DsbA
Descriptor: GLYCEROL, Thiol:disulfide interchange protein dsbA
Authors:Shouldice, S.R.
Deposit date:2009-04-29
Release date:2009-12-08
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Characterization of the DsbA Oxidative Folding Catalyst from Pseudomonas aeruginosa Reveals a Highly Oxidizing Protein that Binds Small Molecules.
Antioxid Redox Signal, 12, 2010
6O5Z
DownloadVisualize
BU of 6o5z by Molmil
Crystal Structure of the human MLKL pseudokinase domain bound to compound 2
Descriptor: 1,2-ETHANEDIOL, 1-[2-fluoranyl-5-(trifluoromethyl)phenyl]-3-[4-[methyl-[2-[(3-sulfamoylphenyl)amino]pyrimidin-4-yl]amino]phenyl]urea, Mixed lineage kinase domain-like protein
Authors:Cowan, A.D, Murphy, J.M, Pierotti, C.L, Lessene, G.L, Czabotar, P.E.
Deposit date:2019-03-04
Release date:2020-09-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.285 Å)
Cite:Potent Inhibition of Necroptosis by Simultaneously Targeting Multiple Effectors of the Pathway.
Acs Chem.Biol., 15, 2020
6VT2
DownloadVisualize
BU of 6vt2 by Molmil
Sialic acid binding region of Streptococcus sanguinis SK1 adhesin bound to sTa
Descriptor: Adhesin, CALCIUM ION, GLYCEROL, ...
Authors:Stubbs, H.E, Iverson, T.M.
Deposit date:2020-02-12
Release date:2020-08-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Tandem sialoglycan-binding modules in a Streptococcus sanguinis serine-rich repeat adhesin create target dependent avidity effects.
J.Biol.Chem., 295, 2020
6VU6
DownloadVisualize
BU of 6vu6 by Molmil
Sialic acid binding region of Streptococcus Sanguinis SK1 adhesin bound to 3'sLn
Descriptor: Adhesin, CALCIUM ION, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Stubbs, H.E, Iverson, T.M.
Deposit date:2020-02-14
Release date:2020-08-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Tandem sialoglycan-binding modules in a Streptococcus sanguinis serine-rich repeat adhesin create target dependent avidity effects.
J.Biol.Chem., 295, 2020
6VS7
DownloadVisualize
BU of 6vs7 by Molmil
Sialic acid binding region of Streptococcus Sanguinis SK1 adhesin
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Adhesin, ...
Authors:Stubbs, H.E, Iverson, T.M.
Deposit date:2020-02-10
Release date:2020-08-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tandem sialoglycan-binding modules in a Streptococcus sanguinis serine-rich repeat adhesin create target dependent avidity effects.
J.Biol.Chem., 295, 2020
8OWV
DownloadVisualize
BU of 8owv by Molmil
H6 and F2 nanobodies bound to SARS-CoV-2 spike RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, F2, GLYCEROL, ...
Authors:Mikolajek, H, Naismith, J.H, Owens, R.J.
Deposit date:2023-04-28
Release date:2024-05-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural and functional characterization of nanobodies that neutralize Omicron variants of SARS-CoV-2.
Open Biology, 14, 2024
8OYU
DownloadVisualize
BU of 8oyu by Molmil
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, H6 nanobody, ...
Authors:Weckener, M, Naismith, J.H, Owens, R.J.
Deposit date:2023-05-05
Release date:2024-05-15
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural and functional characterization of nanobodies that neutralize Omicron variants of SARS-CoV-2.
Open Biology, 14, 2024
8OYT
DownloadVisualize
BU of 8oyt by Molmil
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '3 up' RBD conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, H6 nanobody, ...
Authors:Weckener, M, Naismith, J.H, Owens, R.J.
Deposit date:2023-05-05
Release date:2024-07-03
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural and functional characterization of nanobodies that neutralize Omicron variants of SARS-CoV-2.
Open Biology, 14, 2024
8OWT
DownloadVisualize
BU of 8owt by Molmil
SARS-CoV-2 spike RBD with A8 and H3 nanobodies bound
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody A8, ...
Authors:Mikolajek, H, Naismith, J.H, Owens, R.J.
Deposit date:2023-04-28
Release date:2024-05-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structural and functional characterization of nanobodies that neutralize Omicron variants of SARS-CoV-2.
Open Biology, 14, 2024
8OWW
DownloadVisualize
BU of 8oww by Molmil
B5-5 nanobody bound to SARS-CoV-2 spike RBD (Wuhan)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, B5-5 nanobody, ...
Authors:Cornish, K.A.S, Naismith, J.H, Owens, R.J.
Deposit date:2023-04-28
Release date:2024-05-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.969 Å)
Cite:Structural and functional characterization of nanobodies that neutralize Omicron variants of SARS-CoV-2.
Open Biology, 14, 2024

227561

PDB entries from 2024-11-20

PDB statisticsPDBj update infoContact PDBjnumon