Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2KBF
DownloadVisualize
BU of 2kbf by Molmil
solution structure of carboxyl-terminal domain of Dbp5p
Descriptor: ATP-dependent RNA helicase DBP5
Authors:Fan, J.S, Zhang, J, Yang, D.
Deposit date:2008-11-28
Release date:2009-10-13
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution and crystal structures of mRNA exporter Dbp5p and its interaction with nucleotides.
J.Mol.Biol., 388, 2009
2I7K
DownloadVisualize
BU of 2i7k by Molmil
Solution Structure of the Bromodomain of Human BRD7 Protein
Descriptor: Bromodomain-containing protein 7
Authors:Sun, H, Liu, J, Zhang, J, Huang, H, Wu, J, Shi, Y.
Deposit date:2006-08-31
Release date:2007-07-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of BRD7 bromodomain and its interaction with acetylated peptides from histone H3 and H4
Biochem.Biophys.Res.Commun., 358, 2007
3AH5
DownloadVisualize
BU of 3ah5 by Molmil
Crystal Structure of flavin dependent thymidylate synthase ThyX from helicobacter pylori complexed with FAD and dUMP
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Zhang, X, Zhang, J, Hu, Y, Zou, Q, Wang, D.
Deposit date:2010-04-14
Release date:2011-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure and functional analysis of a flavin dependent thymidylate synthase from helicobacter pylori
To be Published
8FHD
DownloadVisualize
BU of 8fhd by Molmil
Cryo-EM structure of human voltage-gated sodium channel Nav1.6
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, (5E,17R,20S)-23-amino-20-hydroxy-14,20-dioxo-15,19,21-trioxa-20lambda~5~-phosphatricos-5-en-17-yl hexadecanoate, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Fan, X, Huang, J, Yan, N.
Deposit date:2022-12-14
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of human voltage-gated sodium channel Na v 1.6.
Proc.Natl.Acad.Sci.USA, 120, 2023
7C2Y
DownloadVisualize
BU of 7c2y by Molmil
The crystal structure of COVID-2019 main protease in the apo state
Descriptor: 3C-like proteinase
Authors:Zhou, X.L, Zhong, F.L, Lin, C, Zhou, H, Hu, X.H, Wang, Q.S, Li, J, Zhang, J.
Deposit date:2020-05-10
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:COVID-2019 main protease in the apo state
To Be Published
7C4U
DownloadVisualize
BU of 7c4u by Molmil
MicroED structure of orthorhombic Vancomycin at 1.2 A resolution
Descriptor: CHLORIDE ION, Vancomycin, vancosamine-(1-2)-beta-D-glucopyranose
Authors:Fan, Q, Zhou, H, Li, X, Wang, J.
Deposit date:2020-05-18
Release date:2020-08-12
Last modified:2021-03-17
Method:ELECTRON CRYSTALLOGRAPHY (1.2 Å)
Cite:Precise Control Over Kinetics of Molecular Assembly: Production of Particles with Tunable Sizes and Crystalline Forms.
Angew.Chem.Int.Ed.Engl., 59, 2020
7C4V
DownloadVisualize
BU of 7c4v by Molmil
MicroED structure of anorthic Vancomycin at 1.05 A resolution
Descriptor: CHLORIDE ION, Vancomycin, vancosamine-(1-2)-beta-D-glucopyranose
Authors:Fan, Q, Zhou, H, Li, X, Wang, J.
Deposit date:2020-05-18
Release date:2020-08-12
Last modified:2023-11-29
Method:ELECTRON CRYSTALLOGRAPHY (1.05 Å)
Cite:Precise Control Over Kinetics of Molecular Assembly: Production of Particles with Tunable Sizes and Crystalline Forms.
Angew.Chem.Int.Ed.Engl., 59, 2020
5ITU
DownloadVisualize
BU of 5itu by Molmil
Crystal Structure of Human NEIL1(242K) bound to duplex DNA containing THF
Descriptor: DNA (5'-D(*CP*GP*TP*CP*CP*AP*CP*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'), Endonuclease 8-like 1
Authors:Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C.
Deposit date:2016-03-17
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair
Proc.Natl.Acad.Sci.USA, 113, 2016
5ITT
DownloadVisualize
BU of 5itt by Molmil
Crystal Structure of Human NEIL1 bound to duplex DNA containing THF
Descriptor: DNA (26-MER), Endonuclease 8-like 1, GLYCEROL
Authors:Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C.
Deposit date:2016-03-17
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair
Proc.Natl.Acad.Sci.USA, 113, 2016
2L7Y
DownloadVisualize
BU of 2l7y by Molmil
Solution structure of a putative surface protein
Descriptor: Putative endo-beta-N-acetylglucosaminidase
Authors:Wang, T, Yuan, G, Zhang, J, Tu, X.
Deposit date:2010-12-27
Release date:2012-02-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:1H and 15N Assigned Chemical Shifts for a putative surface protein
To be Published
2L97
DownloadVisualize
BU of 2l97 by Molmil
Solution structure of HtrA PDZ domain from Streptococcus pneumoniae
Descriptor: Putative serine protease
Authors:Fan, K, Zhang, J, Zhang, X, Tu, X.
Deposit date:2011-02-02
Release date:2012-01-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of HtrA PDZ domain from Streptococcus pneumoniae and its interaction with YYF-COOH containing peptides.
J.Struct.Biol., 176, 2011
3HVT
DownloadVisualize
BU of 3hvt by Molmil
STRUCTURAL BASIS OF ASYMMETRY IN THE HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE HETERODIMER
Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51), HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66)
Authors:Steitz, T.A, Smerdon, S.J, Jaeger, J, Wang, J, Kohlstaedt, L.A, Chirino, A.J, Friedman, J.M, Rice, P.A.
Deposit date:1994-07-25
Release date:1994-10-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the binding site for nonnucleoside inhibitors of the reverse transcriptase of human immunodeficiency virus type 1.
Proc.Natl.Acad.Sci.Usa, 91, 1994
1VK1
DownloadVisualize
BU of 1vk1 by Molmil
Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001
Descriptor: Conserved hypothetical protein, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
Authors:Shah, A, Liu, Z.J, Tempel, W, Chen, L, Lee, D, Yang, H, Chang, J, Zhao, M, Ng, J, Rose, J, Brereton, P.S, Izumi, M, Jenney Jr, F.E, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, D.C, Richardson, J.S, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-04-13
Release date:2004-08-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:(NZ)CH...O contacts assist crystallization of a ParB-like nuclease.
Bmc Struct.Biol., 7, 2007
8UPY
DownloadVisualize
BU of 8upy by Molmil
Methanosarcine mazei tRNAPyl in A-site of ribosome
Descriptor: RNA (72-MER)
Authors:Krahn, N, Zhang, J, Melnikov, S.V, Tharp, J.M, Villa, A, Patel, A, Howard, R.J, Gabir, H, Patel, T.R, Stetefeld, J, Puglisi, J, Soll, D.
Deposit date:2023-10-23
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut.
Nucleic Acids Res., 52, 2024
4RHR
DownloadVisualize
BU of 4rhr by Molmil
Crystal structure of PltB
Descriptor: ACETATE ION, Putative pertussis-like toxin subunit
Authors:Gao, X, Wang, J, Galan, J.
Deposit date:2014-10-02
Release date:2014-10-29
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.079 Å)
Cite:Host adaptation of a bacterial toxin from the human pathogen salmonella typhi.
Cell(Cambridge,Mass.), 159, 2014
2M1H
DownloadVisualize
BU of 2m1h by Molmil
Solution structure of a PWWP domain from Trypanosoma brucei
Descriptor: Transcription elongation factor S-II
Authors:Wang, R, Fan, K, Liao, S, Zhang, J, Tu, X.
Deposit date:2012-11-28
Release date:2013-12-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of TbTFIIS2-1 PWWP domain from Trypanosoma brucei.
Proteins, 84, 2016
4RHS
DownloadVisualize
BU of 4rhs by Molmil
Crystal structure of GD2 bound PltB
Descriptor: ACETATE ION, N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose, Putative pertussis-like toxin subunit
Authors:Gao, X, Wang, J, Galan, J.
Deposit date:2014-10-02
Release date:2014-10-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9211 Å)
Cite:Host adaptation of a bacterial toxin from the human pathogen salmonella typhi.
Cell(Cambridge,Mass.), 159, 2014
7APE
DownloadVisualize
BU of 7ape by Molmil
Crystal structure of LpqY from Mycobacterium thermoresistible in complex with trehalose
Descriptor: Lipoprotein (Sugar-binding) lpqY, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Furze, C.M, Guy, C.M, Angula, J, Cameron, A.D, Fullam, E.
Deposit date:2020-10-16
Release date:2021-04-28
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter.
J.Biol.Chem., 296, 2021
8H1D
DownloadVisualize
BU of 8h1d by Molmil
Solid-state NMR Structure of Aquaporin Z in its Native Cellular Membranes
Descriptor: Aquaporin Z
Authors:Xie, H, Zhao, Y, Zhao, W, Chen, Y, Liu, M, Yang, J.
Deposit date:2022-10-02
Release date:2022-11-09
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Solid-state NMR structure determination of a membrane protein in E. coli cellular inner membrane.
Sci Adv, 9, 2023
2Z3B
DownloadVisualize
BU of 2z3b by Molmil
Crystal Structure of Bacillus Subtilis CodW, a non-canonical HslV-like peptidase with an impaired catalytic apparatus
Descriptor: ATP-dependent protease hslV, SODIUM ION
Authors:Rho, S.H, Park, H.H, Kang, G.B, Lim, Y.J, Kang, M.S, Lim, B.K, Seong, I.S, Chung, C.H, Wang, J, Eom, S.H.
Deposit date:2007-06-03
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Bacillus subtilis CodW, a noncanonical HslV-like peptidase with an impaired catalytic apparatus
Proteins, 71, 2007
5ITR
DownloadVisualize
BU of 5itr by Molmil
Crystal Structure of Human NEIL1(P2G) bound to duplex DNA containing THF
Descriptor: DNA (26-MER), Endonuclease 8-like 1
Authors:Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C.
Deposit date:2016-03-17
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair
Proc.Natl.Acad.Sci.USA, 113, 2016
7EA9
DownloadVisualize
BU of 7ea9 by Molmil
Crystal Structure of human lysyl-tRNA synthetase Y145H mutant
Descriptor: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, GLYCEROL, Lysine--tRNA ligase
Authors:Wu, S, Hei, Z, Zheng, L, Zhou, J, Liu, Z, Wang, J, Fang, P.
Deposit date:2021-03-06
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analyses of a human lysyl-tRNA synthetase mutant associated with autosomal recessive nonsyndromic hearing impairment.
Biochem.Biophys.Res.Commun., 554, 2021
8TUW
DownloadVisualize
BU of 8tuw by Molmil
Type IV pilus from Pseudomonas PAO1 strain with PP7 Maturation protein
Descriptor: Maturation protein A, Type IV major pilin protein PilA
Authors:Thongchol, J, Zhang, J, Zeng, L.
Deposit date:2023-08-17
Release date:2024-03-13
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Removal of Pseudomonas type IV pili by a small RNA virus.
Science, 384, 2024
8TUX
DownloadVisualize
BU of 8tux by Molmil
Capsid of mature PP7 virion with 3'end region of PP7 genomic RNA
Descriptor: 3'end of PP7 genomic RNA, Capsid protein, Maturation protein A
Authors:Thongchol, J, Zhang, J, Zeng, L.
Deposit date:2023-08-17
Release date:2024-03-13
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Removal of Pseudomonas type IV pili by a small RNA virus.
Science, 384, 2024
8TUM
DownloadVisualize
BU of 8tum by Molmil
Type IV pilus from Pseudomonas PAO1 strain
Descriptor: Type IV major pilin protein PilA
Authors:Thongchol, J, Zhang, J, Zeng, L.
Deposit date:2023-08-16
Release date:2024-03-13
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Removal of Pseudomonas type IV pili by a small RNA virus.
Science, 384, 2024

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon