Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5Z7A
DownloadVisualize
BU of 5z7a by Molmil
Crystal structure of NDP52 SKICH region
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Calcium-binding and coiled-coil domain-containing protein 2, GLYCEROL, ...
Authors:Pan, L.F, Fu, T, Liu, J.P, Xie, X.Q.
Deposit date:2018-01-27
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5Z7G
DownloadVisualize
BU of 5z7g by Molmil
Crystal structure of TAX1BP1 SKICH region in complex with NAP1
Descriptor: 5-azacytidine-induced protein 2, GLYCEROL, Tax1-binding protein 1
Authors:Pan, L.F, Fu, T, Liu, J.P, Xie, X.Q, Wang, Y.L, Hu, S.C.
Deposit date:2018-01-28
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3O24
DownloadVisualize
BU of 3o24 by Molmil
Crystal structure of the brevianamide F prenyltransferase FtmPT1 from Aspergillus fumigatus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Brevianamide F prenyltransferase, CHLORIDE ION, ...
Authors:Jost, M, Zocher, G.E, Stehle, T.
Deposit date:2010-07-22
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-function analysis of an enzymatic prenyl transfer reaction identifies a reaction chamber with modifiable specificity.
J.Am.Chem.Soc., 132, 2010
8DT3
DownloadVisualize
BU of 8dt3 by Molmil
Cryo-EM structure of spike binding to Fab of neutralizing antibody (locally refined)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain Fab of SW186, Light chain Fab of SW186, ...
Authors:Sun, P.C, Fang, Y, Bai, X.C, Chen, Z.J.
Deposit date:2022-07-25
Release date:2022-08-03
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:An antibody that neutralizes SARS-CoV-1 and SARS-CoV-2 by binding to a conserved spike epitope outside the receptor binding motif.
Sci Immunol, 7, 2022
1WDC
DownloadVisualize
BU of 1wdc by Molmil
SCALLOP MYOSIN REGULATORY DOMAIN
Descriptor: CALCIUM ION, MAGNESIUM ION, SCALLOP MYOSIN
Authors:Houdusse, A, Cohen, C.
Deposit date:1996-01-19
Release date:1996-07-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the regulatory domain of scallop myosin at 2 A resolution: implications for regulation.
Structure, 4, 1996
3GJ9
DownloadVisualize
BU of 3gj9 by Molmil
crystal structure of TIP-1 in complex with c-terminal of Kir2.3
Descriptor: C-terminal peptide from Inward rectifier potassium channel 4, CHLORIDE ION, Tax1-binding protein 3, ...
Authors:Shen, Y.
Deposit date:2009-03-08
Release date:2009-12-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of inward rectifier potassium channel 2.3 regulation by tax-interacting protein-1
J.Mol.Biol., 392, 2009
6LF8
DownloadVisualize
BU of 6lf8 by Molmil
Crystal structure of pSLA-1*0401 complex with dodecapeptide RVEDVTNTAEYW
Descriptor: ARG-VAL-GLU-ASP-VAL-THR-ASN-THR-ALA-GLU-TYR-TRP, Beta-2-microglobulin, MHC class I antigen
Authors:Wei, X.H, Wang, S, Zhang, N.Z, Xia, C.
Deposit date:2019-11-30
Release date:2021-03-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Peptidomes of Swine MHC Class I with Long Peptides Reveal the Cross-Species Characteristics of the Novel N-Terminal Extension Presentation Mode.
J Immunol., 208, 2022
5D5O
DownloadVisualize
BU of 5d5o by Molmil
HcgC from Methanocaldococcus jannaschii
Descriptor: SULFATE ION, Uncharacterized protein MJ0489
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-08-11
Release date:2016-07-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
9JAQ
DownloadVisualize
BU of 9jaq by Molmil
Cryo-EM structure of MPXV core protease in the apo-form
Descriptor: Core protease I7
Authors:Lan, W, You, T, Li, D, Dong, X, Wang, H, Xu, J, Wang, W, Gao, Y, Yang, H.
Deposit date:2024-08-25
Release date:2025-03-12
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Substrate recognition and cleavage mechanism of the monkeypox virus core protease.
Nature, 2025
9KQV
DownloadVisualize
BU of 9kqv by Molmil
Cryo-EM structure of MPXV core protease in complex with aloxistatin(E64d)
Descriptor: Core protease I7, ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate
Authors:Lan, W, You, T, Li, D, Dong, X, Wang, H, Xu, J, Wang, W, Gao, Y, Yang, H.
Deposit date:2024-11-27
Release date:2025-03-12
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Substrate recognition and cleavage mechanism of the monkeypox virus core protease.
Nature, 2025
9KR6
DownloadVisualize
BU of 9kr6 by Molmil
Cryo-EM structure of MPXV core protease in complex with the substrate derivative I-G18
Descriptor: Core protease I7, Core protein VP8
Authors:Lan, W, You, T, Li, D, Dong, X, Wang, H, Xu, J, Wang, W, Gao, Y, Yang, H.
Deposit date:2024-11-27
Release date:2025-03-12
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Substrate recognition and cleavage mechanism of the monkeypox virus core protease.
Nature, 2025
5CQR
DownloadVisualize
BU of 5cqr by Molmil
Dimerization of Elp1 is essential for Elongator complex assembly
Descriptor: Elongator complex protein 1
Authors:Lin, Z, Xu, H, Li, F, Diao, W, Long, J, Shen, Y.
Deposit date:2015-07-22
Release date:2015-08-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.015 Å)
Cite:Dimerization of elongator protein 1 is essential for Elongator complex assembly.
Proc.Natl.Acad.Sci.USA, 112, 2015
5CQS
DownloadVisualize
BU of 5cqs by Molmil
Dimerization of Elp1 is essential for Elongator complex assembly
Descriptor: Elongator complex protein 1
Authors:Lin, Z, Xu, H, Li, F, Diao, W, Long, J, Shen, Y.
Deposit date:2015-07-22
Release date:2015-08-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Dimerization of elongator protein 1 is essential for Elongator complex assembly.
Proc.Natl.Acad.Sci.USA, 112, 2015
7L7E
DownloadVisualize
BU of 7l7e by Molmil
Crystal structure of SARS-CoV-2 spike RBD in complex with human monoclonal antibodies AZD8895 and AZD1061
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, Spike protein S1, ...
Authors:Dong, J, Crowe, J.E.
Deposit date:2020-12-28
Release date:2021-09-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail.
Nat Microbiol, 6, 2021
7L7D
DownloadVisualize
BU of 7l7d by Molmil
Crystal structure of SARS-CoV-2 spike RBD in complex with human monoclonal antibody AZD8895
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Spike protein S1, ...
Authors:Dong, J, Crowe, J.E.
Deposit date:2020-12-28
Release date:2021-09-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail.
Nat Microbiol, 6, 2021
3O2K
DownloadVisualize
BU of 3o2k by Molmil
Crystal Structure of Brevianamide F Prenyltransferase Complexed with Brevianamide F and Dimethylallyl S-thiolodiphosphate
Descriptor: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Brevianamide F prenyltransferase, ...
Authors:Jost, M, Zocher, G.E, Stehle, T.
Deposit date:2010-07-22
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-function analysis of an enzymatic prenyl transfer reaction identifies a reaction chamber with modifiable specificity.
J.Am.Chem.Soc., 132, 2010
8GOU
DownloadVisualize
BU of 8gou by Molmil
Omicron BA.4/5 SARS-CoV-2 S in complex with TH003 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, TH003 Fab heavy chain, ...
Authors:Guo, Y, Zhang, G, Liang, J, Liu, F, Rao, Z.
Deposit date:2022-08-25
Release date:2023-06-28
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Discovery and characterization of potent pan-variant SARS-CoV-2 neutralizing antibodies from individuals with Omicron breakthrough infection.
Nat Commun, 14, 2023
8GPY
DownloadVisualize
BU of 8gpy by Molmil
Crystal structure of Omicron BA.4/5 RBD in complex with a neutralizing antibody scFv
Descriptor: Spike protein S1, scFv
Authors:Gao, Y.X, Song, Z.D, Wang, W.M, Guo, Y.
Deposit date:2022-08-27
Release date:2023-06-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Discovery and characterization of potent pan-variant SARS-CoV-2 neutralizing antibodies from individuals with Omicron breakthrough infection.
Nat Commun, 14, 2023
8WHK
DownloadVisualize
BU of 8whk by Molmil
Crystal structure of CLASP2 in complex with LL5beta
Descriptor: CHLORIDE ION, CLIP-associating protein 2, Pleckstrin homology-like domain family B member 2
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
8WHJ
DownloadVisualize
BU of 8whj by Molmil
Crystal structure of CLASP2 TOG4 fused with LL5beta
Descriptor: CHLORIDE ION, CLIP-associating protein 2,Pleckstrin homology-like domain family B member 2, DI(HYDROXYETHYL)ETHER
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
8WHL
DownloadVisualize
BU of 8whl by Molmil
Crystal structure of CLASP2 in complex with CENP-E
Descriptor: ACETATE ION, CLIP-associating protein 2, Centromere-associated protein E, ...
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
8WHM
DownloadVisualize
BU of 8whm by Molmil
Crystal structure of the ELKS2/LL5beta complex
Descriptor: ERC protein 2, Pleckstrin homology-like domain family B member 2
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
6VG5
DownloadVisualize
BU of 6vg5 by Molmil
DengueV-2 Capsid ST148 inhibitor Complex
Descriptor: 3-amino-N-(5-phenyl-1,3,4-thiadiazol-2-yl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]thieno[3,2-e]pyridine-2-carboxamide, Capsid premembrane protein, GLYCEROL, ...
Authors:White, M, Xia, H, Shi, P.
Deposit date:2020-01-07
Release date:2020-07-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A cocrystal structure of dengue capsid protein in complex of inhibitor.
Proc.Natl.Acad.Sci.USA, 117, 2020
8WHH
DownloadVisualize
BU of 8whh by Molmil
Crystal structure of Se-Met derivative CLASP2 in complex with CLIP170
Descriptor: CLIP-associating protein 2, CLIP1 protein
Authors:Jin, G, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.801 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
8WHI
DownloadVisualize
BU of 8whi by Molmil
Crystal structure of native CLASP2 in complex with CLIP170
Descriptor: 1,2-ETHANEDIOL, CLIP-associating protein 2, CLIP1 protein, ...
Authors:Jin, G, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.853 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon