Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4N9J
DownloadVisualize
BU of 4n9j by Molmil
Crystal structure of the cryptic polo box domain of human Plk4
Descriptor: CHLORIDE ION, SULFATE ION, Serine/threonine-protein kinase PLK4
Authors:Ku, B, Kim, J.H, Lee, K.S, Kim, S.J.
Deposit date:2013-10-21
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.
Nat.Struct.Mol.Biol., 21, 2014
4LKM
DownloadVisualize
BU of 4lkm by Molmil
Crystal structure of Plk1 Polo-box domain in complex with PL-74
Descriptor: GLYCEROL, PL-74, SULFATE ION, ...
Authors:Lee, W.C, Song, J.H, Kim, H.Y.
Deposit date:2013-07-08
Release date:2013-12-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Exploring the binding nature of pyrrolidine pocket-dependent interactions in the polo-box domain of polo-like kinase 1
Plos One, 8, 2013
4LKL
DownloadVisualize
BU of 4lkl by Molmil
Crystal structure of Plk1 Polo-box domain in complex with PL-55
Descriptor: ADAMANTANE, PL-55, Serine/threonine-protein kinase PLK1
Authors:Lee, W.C, Song, J.H, Kim, H.Y.
Deposit date:2013-07-08
Release date:2013-12-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Exploring the binding nature of pyrrolidine pocket-dependent interactions in the polo-box domain of polo-like kinase 1
Plos One, 8, 2013
8YY8
DownloadVisualize
BU of 8yy8 by Molmil
Fzd7 -Gs complex
Descriptor: Frizzled-7, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Chen, B, Xu, L, Han, G.W, Xu, F.
Deposit date:2024-04-03
Release date:2024-04-24
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Cryo-EM structure of constitutively active human Frizzled 7 in complex with heterotrimeric G s .
Cell Res., 31, 2021
3KJF
DownloadVisualize
BU of 3kjf by Molmil
Caspase 3 Bound to a covalent inhibitor
Descriptor: (3S)-3-({[(5S,10aS)-2-{(2S)-4-carboxy-2-[(phenylacetyl)amino]butyl}-1,3-dioxo-2,3,5,7,8,9,10,10a-octahydro-1H-[1,2,4]triazolo[1,2-a]cinnolin-5-yl]carbonyl}amino)-4-oxopentanoic acid, Caspase-3
Authors:Kamtekar, S, Watt, W, Finzel, B.C, Harris, M.S, Blinn, J, Wang, Z, Tomasselli, A.G.
Deposit date:2009-11-03
Release date:2010-08-11
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kinetic and structural characterization of caspase-3 and caspase-8 inhibition by a novel class of irreversible inhibitors.
Biochim.Biophys.Acta, 1804, 2010
3KJN
DownloadVisualize
BU of 3kjn by Molmil
Caspase 8 bound to a covalent inhibitor
Descriptor: (3S)-3-({[(5S)-2-{2-[(1H-benzimidazol-5-ylcarbonyl)amino]ethyl}-7-(cyclohexylmethyl)-1,3-dioxo-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazin-5-yl]carbonyl}amino)-4-oxopentanoic acid, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Caspase-8
Authors:Kamtekar, S, Watt, W, Finzel, B.C, Harris, M.S, Blinn, J, Wang, Z, Tomasselli, A.G.
Deposit date:2009-11-03
Release date:2010-08-11
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Kinetic and structural characterization of caspase-3 and caspase-8 inhibition by a novel class of irreversible inhibitors.
Biochim.Biophys.Acta, 1804, 2010
2CFO
DownloadVisualize
BU of 2cfo by Molmil
Non-Discriminating Glutamyl-tRNA Synthetase from Thermosynechococcus elongatus in Complex with Glu
Descriptor: GLUTAMIC ACID, GLUTAMYL-TRNA SYNTHETASE
Authors:Schulze, J.O, Nickel, D, Schubert, W.-D, Jahn, D, Heinz, D.W.
Deposit date:2006-02-22
Release date:2006-08-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structure of a Non-Discriminating Glutamyl- tRNA Synthetase.
J.Mol.Biol., 361, 2006
6ENE
DownloadVisualize
BU of 6ene by Molmil
OmpF orthologue from Enterobacter cloacae (OmpE35)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Outer membrane protein (Porin), SULFATE ION, ...
Authors:van den Berg, B, Abellon-Ruiz, J, Basle, A.
Deposit date:2017-10-04
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins.
Acs Infect Dis., 4, 2018
5O79
DownloadVisualize
BU of 5o79 by Molmil
Klebsiella pneumoniae OmpK36
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MAGNESIUM ION, OmpK36
Authors:van den berg, B, Pathania, M.
Deposit date:2017-06-08
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins.
Acs Infect Dis., 4, 2018
1CGC
DownloadVisualize
BU of 1cgc by Molmil
DOUBLE HELIX CONFORMATION GROOVE DIMENSIONS AND LIGAND BINDING POTENTIAL OF A G/C-STRETCH IN B-DNA
Descriptor: DNA (5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3')
Authors:Heinemann, U, Bansal, M.
Deposit date:1992-01-15
Release date:1993-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA.
EMBO J., 11, 1992
3KJQ
DownloadVisualize
BU of 3kjq by Molmil
Caspase 8 with covalent inhibitor
Descriptor: (3S)-3-({[(5S,8R)-2-(3-carboxypropyl)-8-(2-{[(4-chlorophenyl)acetyl]amino}ethyl)-1,3-dioxo-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazin-5-yl]carbonyl}amino)-4-oxopentanoic acid, Caspase-8
Authors:Kamtekar, S, Watt, W, Finzel, B.C, Harris, M.S, Blinn, J, Wang, Z, Tomasselli, A.G.
Deposit date:2009-11-03
Release date:2010-08-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Kinetic and structural characterization of caspase-3 and caspase-8 inhibition by a novel class of irreversible inhibitors.
Biochim.Biophys.Acta, 1804, 2010
3D6E
DownloadVisualize
BU of 3d6e by Molmil
Crystal structure of the engineered 1,3-1,4-beta-glucanase protein from Bacillus licheniformis
Descriptor: Beta-glucanase, CALCIUM ION
Authors:Fita, I, Planas, A, Calisto, B.M, Addington, T.
Deposit date:2008-05-19
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Re-engineering specificity in 1,3-1,4-beta-glucanase to accept branched xyloglucan substrates
Proteins, 79, 2011
5JW7
DownloadVisualize
BU of 5jw7 by Molmil
Crystal structure of SopA-Trim56 complex
Descriptor: E3 ubiquitin-protein ligase SopA, E3 ubiquitin-protein ligase TRIM56, ZINC ION
Authors:Bhogaraju, S, Dikic, I.
Deposit date:2016-05-11
Release date:2017-02-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.849 Å)
Cite:Structural basis for the recognition and degradation of host TRIM proteins by Salmonella effector SopA.
Nat Commun, 8, 2017
6ZLU
DownloadVisualize
BU of 6zlu by Molmil
Closed-closed state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6Z9A
DownloadVisualize
BU of 6z9a by Molmil
Fructo-oligosaccharide transporter BT 1762-63
Descriptor: CHLORIDE ION, MAGNESIUM ION, SusC homolog, ...
Authors:van den Berg, B.
Deposit date:2020-06-03
Release date:2020-11-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZM1
DownloadVisualize
BU of 6zm1 by Molmil
Open-closed state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6Z8I
DownloadVisualize
BU of 6z8i by Molmil
Fructo-oligosaccharide transporter BT 1762-63
Descriptor: MAGNESIUM ION, PHOSPHATE ION, SusC homolog, ...
Authors:van den Berg, B.
Deposit date:2020-06-02
Release date:2020-11-18
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZAZ
DownloadVisualize
BU of 6zaz by Molmil
Fructo-oligosaccharide transporter BT 1762-63
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:van den Berg, B.
Deposit date:2020-06-06
Release date:2020-11-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZLT
DownloadVisualize
BU of 6zlt by Molmil
Open-open state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6YTC
DownloadVisualize
BU of 6ytc by Molmil
Solution NMR structure of the isolated NTE domain of BT1762-63 levan transporter
Descriptor: TonB-dependent receptor
Authors:Rath, P, Mazur, A, Hiller, S.
Deposit date:2020-04-24
Release date:2020-07-08
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
2ORB
DownloadVisualize
BU of 2orb by Molmil
The structure of the anti-c-myc antibody 9E10 Fab fragment
Descriptor: Monoclonal anti-c-myc antibody 9E10, SULFATE ION
Authors:Krauss, N, Scheerer, P, Hoehne, W.
Deposit date:2007-02-02
Release date:2008-02-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops.
Proteins, 73, 2008
2OR9
DownloadVisualize
BU of 2or9 by Molmil
The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops
Descriptor: Monoclonal anti-c-myc antibody 9E10, synthetic epitope peptide of 9E10
Authors:Krauss, N, Scheerer, P, Hoehne, W.
Deposit date:2007-02-02
Release date:2008-02-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops.
Proteins, 73, 2008
1AJK
DownloadVisualize
BU of 1ajk by Molmil
CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-84
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE, ...
Authors:Ay, J, Heinemann, U.
Deposit date:1997-05-06
Release date:1998-05-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures and properties of de novo circularly permuted 1,3-1,4-beta-glucanases.
Proteins, 30, 1998
1AJO
DownloadVisualize
BU of 1ajo by Molmil
CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-127
Descriptor: CALCIUM ION, CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-127
Authors:Ay, J, Heinemann, U.
Deposit date:1997-05-07
Release date:1998-05-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structures and properties of de novo circularly permuted 1,3-1,4-beta-glucanases.
Proteins, 30, 1998
3HAT
DownloadVisualize
BU of 3hat by Molmil
ACTIVE SITE MIMETIC INHIBITION OF THROMBIN
Descriptor: FPAM (FIBRINOPEPTIDE A MIMIC), Hirudin variant-2, Thrombin heavy chain, ...
Authors:Tulinsky, A, Mathews, I.I.
Deposit date:1994-10-16
Release date:1995-02-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Active-site mimetic inhibition of thrombin.
Acta Crystallogr.,Sect.D, 51, 1995

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon