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2ZK0
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BU of 2zk0 by Molmil
Human peroxisome proliferator-activated receptor gamma ligand binding domain
Descriptor: Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Fujimoto, Y, Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK4
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BU of 2zk4 by Molmil
Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 15-oxo-eicosatetraenoic acid
Descriptor: (5E,8E,11Z,13E)-15-oxoicosa-5,8,11,13-tetraenoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Fujimoto, Y, Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK3
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BU of 2zk3 by Molmil
Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 8-oxo-eicosatetraenoic acid
Descriptor: (5E,11E,14E)-8-oxoicosa-5,9,11,14-tetraenoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Fujimoto, Y, Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK5
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BU of 2zk5 by Molmil
Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with nitro-233
Descriptor: 3-[5-(2-nitropent-1-en-1-yl)furan-2-yl]benzoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Fujimoto, Y, Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK6
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BU of 2zk6 by Molmil
Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with C8-BODIPY
Descriptor: Peroxisome proliferator-activated receptor gamma, difluoro(5-{2-[(5-octyl-1H-pyrrol-2-yl-kappaN)methylidene]-2H-pyrrol-5-yl-kappaN}pentanoato)boron
Authors:Waku, T, Shiraki, T, Oyama, T, Fujimoto, Y, Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
2ZK2
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BU of 2zk2 by Molmil
Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with glutathion conjugated 15-deoxy-delta12,14-prostaglandin J2
Descriptor: (5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid, GLUTATHIONE, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Fujimoto, Y, Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
3ADS
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BU of 3ads by Molmil
Human PPARgamma ligand-binding domain in complex with indomethacin
Descriptor: INDOMETHACIN, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADW
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BU of 3adw by Molmil
Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate and 15-oxo-eicosatetraenoic acid
Descriptor: (5-methoxy-1H-indol-3-yl)acetic acid, (5E,8E,11Z,13E)-15-oxoicosa-5,8,11,13-tetraenoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3A2F
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BU of 3a2f by Molmil
Crystal Structure of Pyrococcus furiosus DNA polymerase/PCNA monomer mutant complex
Descriptor: DNA polymerase, DNA polymerase sliding clamp
Authors:Nishida, H, Ishino, Y, Morikawa, K.
Deposit date:2009-05-15
Release date:2009-11-03
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex
To be Published
3ADT
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BU of 3adt by Molmil
Human PPARgamma ligand-binding domain in complex with 5-hydroxy-indole acetate
Descriptor: (5-hydroxy-1H-indol-3-yl)acetic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADX
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BU of 3adx by Molmil
Human PPARgamma ligand-binding domain in complex with indomethacin and nitro-233
Descriptor: 3-[5-(2-nitropent-1-en-1-yl)furan-2-yl]benzoic acid, INDOMETHACIN, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADU
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BU of 3adu by Molmil
Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate
Descriptor: (5-methoxy-1H-indol-3-yl)acetic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADV
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BU of 3adv by Molmil
Human PPARgamma ligand-binding domain in complex with serotonin
Descriptor: Peroxisome proliferator-activated receptor gamma, SEROTONIN
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ANW
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BU of 3anw by Molmil
A protein complex essential initiation of DNA replication
Descriptor: Putative uncharacterized protein
Authors:Oyama, T, Shirai, T, Nagasawa, N, Ishino, Y, Morikawa, K.
Deposit date:2010-09-10
Release date:2011-07-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Architectures of archaeal GINS complexes, essential DNA replication initiation factors
Bmc Biol., 9, 2011
3VSP
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BU of 3vsp by Molmil
Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28
Descriptor: (2R)-2-benzyl-3-[3-({[4-(piperidin-1-yl)benzoyl]amino}methyl)-4-propoxyphenyl]propanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Oyama, T, Waku, T, Ohashi, M, Morikawa, K, Miyachi, H.
Deposit date:2012-04-30
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28
To be Published
3W0K
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BU of 3w0k by Molmil
Crystal Structure of a glycoside hydrolase
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bifunctional endomannanase/endoglucanase
Authors:Oyama, T, Nakamura, H, Morikawa, K, Cann, I.K.O.
Deposit date:2012-10-31
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a glycoside hydrolase
To be Published
1EWV
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BU of 1ewv by Molmil
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM II
Descriptor: METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1
Authors:Kunishima, N, Shimada, Y, Tsuji, Y, Jingami, H, Morikawa, K.
Deposit date:2000-04-27
Release date:2000-12-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1EWK
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BU of 1ewk by Molmil
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLUTAMIC ACID, ...
Authors:Kunishima, N, Shimada, Y, Jingami, H, Morikawa, K.
Deposit date:2000-04-26
Release date:2000-12-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1G3R
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BU of 1g3r by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND
Descriptor: CELL DIVISION INHIBITOR, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Hayashi, I, Oyama, T, Morikawa, K.
Deposit date:2000-10-25
Release date:2001-04-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and functional studies of MinD ATPase: implications for the molecular recognition of the bacterial cell division apparatus.
EMBO J., 20, 2001
1G3Q
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BU of 1g3q by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CELL DIVISION INHIBITOR, MAGNESIUM ION
Authors:Hayashi, I, Oyama, T, Morikawa, K.
Deposit date:2000-10-25
Release date:2001-04-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and functional studies of MinD ATPase: implications for the molecular recognition of the bacterial cell division apparatus.
EMBO J., 20, 2001
1GE8
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BU of 1ge8 by Molmil
PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) HOMOLOG FROM PYROCOCCUS FURIOSUS
Descriptor: PROLIFERATION CELL NUCLEAR ANTIGEN
Authors:Matsumiya, S, Ishino, Y, Morikawa, K.
Deposit date:2000-10-18
Release date:2001-01-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus.
Protein Sci., 10, 2001
1HJP
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BU of 1hjp by Molmil
HOLLIDAY JUNCTION BINDING PROTEIN RUVA FROM E. COLI
Descriptor: RUVA
Authors:Nishino, T, Ariyoshi, M, Iwasaki, H, Shinagawa, H, Morikawa, K.
Deposit date:1997-08-21
Release date:1998-02-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Functional Analyses of the Domain Structure in the Holliday Junction Binding Protein Ruva
Structure, 6, 1998
1IZ4
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BU of 1iz4 by Molmil
Pyrococcus furiosus PCNA mutant (Met73Leu/Asp143Ala): tetragonal form
Descriptor: Proliferating cell nuclear antigen
Authors:Matsumiya, S, Ishino, S, Ishino, Y, Morikawa, K.
Deposit date:2002-09-21
Release date:2003-04-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA
PROTEIN SCI., 12, 2003
1IXZ
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BU of 1ixz by Molmil
Crystal structure of the FtsH ATPase domain from Thermus thermophilus
Descriptor: ATP-dependent metalloprotease FtsH, MERCURY (II) ION, SULFATE ION
Authors:Niwa, H, Tsuchiya, D, Makyio, H, Yoshida, M, Morikawa, K.
Deposit date:2002-07-10
Release date:2002-11-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8
Structure, 10, 2002
1IY1
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BU of 1iy1 by Molmil
Crystal structure of the FtsH ATPase domain with ADP from Thermus thermophilus
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent metalloprotease FtsH
Authors:Niwa, H, Tsuchiya, D, Makyio, H, Yoshida, M, Morikawa, K.
Deposit date:2002-07-10
Release date:2002-11-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8
Structure, 10, 2002

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PDB entries from 2024-05-15

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