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8JFR
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BU of 8jfr by Molmil
N-terminal domain of AcrIIA15 in complex with palindromic DNA substrate
Descriptor: AcrIIA15, DNA (5'-D(*AP*TP*TP*AP*TP*GP*AP*CP*AP*AP*AP*TP*GP*TP*CP*AP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*TP*GP*AP*CP*AP*TP*TP*TP*GP*TP*CP*AP*TP*AP*A)-3')
Authors:Deng, X, Wang, Y.
Deposit date:2023-05-18
Release date:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:N-terminal domain of AcrIIA15 in complex with palindromic DNA substrate
To Be Published
8JFT
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BU of 8jft by Molmil
Cryo-EM structure of SaCas9-AcrIIA15 CTD-sgRNA complex
Descriptor: AcrIIA15, CRISPR-associated endonuclease Cas9, sgRNA of SaCas9
Authors:Deng, X, Wang, Y.
Deposit date:2023-05-18
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.31 Å)
Cite:Cryo-EM structure of SaCas9-AcrIIA15 CTD-sgRNA complex
To Be Published
8JG9
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BU of 8jg9 by Molmil
Cryo-EM structure of the SaCas9-sgRNA-AcrIIA15-promoter DNA dimer
Descriptor: AcrIIA15, CRISPR-associated endonuclease Cas9, DNA (25-MER), ...
Authors:Deng, X, Wang, Y.
Deposit date:2023-05-20
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.82 Å)
Cite:Cryo-EM structure of the SaCas9-sgRNA-AcrIIA15-promoter DNA dimer
To Be Published
6KH4
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BU of 6kh4 by Molmil
Design and crystal structure of protein MOFs with ferritin nanocages as linkers and nickel clusters as nodes
Descriptor: FE (III) ION, Ferritin, NICKEL (II) ION
Authors:Gu, C, Chen, H, Wang, Y, Zhang, T, Wang, H, Zhao, G.
Deposit date:2019-07-12
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Structural Insight into Binary Protein Metal-Organic Frameworks with Ferritin Nanocages as Linkers and Nickel Clusters as Nodes.
Chemistry, 26, 2020
6LTR
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BU of 6ltr by Molmil
Crystal structure of Cas12i2 ternary complex with single Mg2+ bound in catalytic pocket
Descriptor: 1,2-ETHANEDIOL, Cas12i2, DNA (35-MER), ...
Authors:Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y.
Deposit date:2020-01-23
Release date:2020-10-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun, 11, 2020
6LU0
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BU of 6lu0 by Molmil
Crystal structure of Cas12i2 ternary complex with 12 nt spacer
Descriptor: Cas12i2, DNA (5'-D(*GP*CP*CP*GP*CP*TP*TP*TP*CP*TP*T)-3'), DNA (5'-D(*GP*CP*TP*TP*GP*CP*TP*CP*TP*GP*TP*TP*GP*AP*AP*AP*GP*CP*GP*GP*C)-3'), ...
Authors:Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y.
Deposit date:2020-01-24
Release date:2020-10-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun, 11, 2020
6LTP
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BU of 6ltp by Molmil
Crystal structure of Cas12i2 binary complex
Descriptor: Cas12i2, crRNA (56-mer RNA)
Authors:Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y.
Deposit date:2020-01-23
Release date:2020-10-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun, 11, 2020
6LTU
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BU of 6ltu by Molmil
Crystal structure of Cas12i2 ternary complex with double Mg2+ bound in catalytic pocket
Descriptor: 1,2-ETHANEDIOL, Cas12i2, DNA (35-MER), ...
Authors:Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y.
Deposit date:2020-01-23
Release date:2020-10-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun, 11, 2020
6KH5
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BU of 6kh5 by Molmil
Design and crystal structure of protein MOFs with ferritin nanocages as linkers and nickel clusters as nodes
Descriptor: FE (III) ION, Ferritin, NICKEL (II) ION
Authors:Gu, C, Chen, H, Wang, Y, Zhang, T, Wang, H, Zhao, G.
Deposit date:2019-07-12
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Structural Insight into Binary Protein Metal-Organic Frameworks with Ferritin Nanocages as Linkers and Nickel Clusters as Nodes.
Chemistry, 26, 2020
7D7E
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BU of 7d7e by Molmil
Structure of PKD1L3-CTD/PKD2L1 in apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Polycystic kidney disease 2-like 1 protein, ...
Authors:Su, Q, Chen, M, Li, B, Wang, Y, Jing, D, Zhan, X, Yu, Y, Shi, Y.
Deposit date:2020-10-03
Release date:2021-08-25
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for Ca 2+ activation of the heteromeric PKD1L3/PKD2L1 channel.
Nat Commun, 12, 2021
6IFO
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BU of 6ifo by Molmil
Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex
Descriptor: AcrIIA2, CRISPR-associated endonuclease Cas9/Csn1, RNA (99-MER)
Authors:Liu, L, Wang, Y.
Deposit date:2018-09-20
Release date:2019-01-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.313 Å)
Cite:Phage AcrIIA2 DNA Mimicry: Structural Basis of the CRISPR and Anti-CRISPR Arms Race.
Mol. Cell, 73, 2019
6KH1
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BU of 6kh1 by Molmil
Design and crystal structure of protein MOFs with ferritin nanocages as linkers and nickel clusters as nodes
Descriptor: FE (III) ION, Ferritin, NICKEL (II) ION
Authors:Gu, C, Chen, H, Wang, Y, Zhang, T, Whang, H, Zhao, G.
Deposit date:2019-07-12
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insight into Binary Protein Metal-Organic Frameworks with Ferritin Nanocages as Linkers and Nickel Clusters as Nodes.
Chemistry, 26, 2020
8TG1
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BU of 8tg1 by Molmil
Caldicellulosiruptor saccharolyticus periplasmic urea-binding protein
Descriptor: BROMIDE ION, Extracellular ligand-binding receptor, UREA
Authors:Allert, M.J, Kumar, S, Wang, Y, Beese, L.S, Hellinga, H.W.
Deposit date:2023-07-12
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Structure-based functional analysis reveals multiple roles and widespread use of urea-binding proteins in nitrogen metabolism
To Be Published
8WLJ
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BU of 8wlj by Molmil
Cryo-EM structure of human apo VMAT2 with nanobody in an outward-facing conformation
Descriptor: Synaptic vesicular amine transporter, nanobody
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of human apo VMAT2 in an outward-facing conformation
To Be Published
8WLL
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BU of 8wll by Molmil
Cryo-EM structure of human VMAT2 Y422C, in the presence of reserpine, determined in an inward-facing conformation
Descriptor: Synaptic vesicular amine transporter, reserpine
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Cryo-EM structure of human VMAT2 Y422C, in the presence of reserpine, determined in an inward-facing conformation
To Be Published
8WLK
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BU of 8wlk by Molmil
Cryo-EM structure of human VMAT2 in presence of Tetrabenazine, determined in an outward-facing conformation
Descriptor: (3S,5R,11bS)-9,10-dimethoxy-3-(2-methylpropyl)-1,3,4,6,7,11b-hexahydro-2H-pyrido[2,1-a]isoquinolin-2-one, Synaptic vesicular amine transporter
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Cryo-EM structure of human apo VMAT2 in an outward-facing conformation
To Be Published
7D6H
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BU of 7d6h by Molmil
Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutant
Descriptor: PHOSPHATE ION, Papain-like protease, ZINC ION
Authors:Liu, J, Wang, Y, Pan, L.
Deposit date:2020-09-30
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Development of potent and selective inhibitors targeting the papain-like protease of SARS-CoV-2.
Cell Chem Biol, 28, 2021
8WLM
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BU of 8wlm by Molmil
Cryo-EM structure of human VMAT2 in presence of 5-HT, determined in an outward-facing conformation
Descriptor: SEROTONIN, Synaptic vesicular amine transporter
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Cryo-EM structure of human VMAT2 in presence of 5-HT in an outward-facing conformation
To Be Published
6AGK
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BU of 6agk by Molmil
The structure of CH-II-77-tubulin complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Chen, H, Arnst, K, Wang, Y, Miller, D, Li, W.
Deposit date:2018-08-13
Release date:2019-08-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Activity Relationship Study of Novel 6-Aryl-2-benzoyl-pyridines as Tubulin Polymerization Inhibitors with Potent Antiproliferative Properties.
J.Med.Chem., 63, 2020
8WRB
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BU of 8wrb by Molmil
Lysophosphatidylserine receptor GPR34-Gi complex
Descriptor: Antibody fragment scFv16, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Gong, W, Liu, G, Li, X, Wang, Y, Zhang, X.
Deposit date:2023-10-13
Release date:2023-11-08
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Structural basis for ligand recognition and signaling of the lysophosphatidylserine receptors GPR34 and GPR174.
Plos Biol., 21, 2023
7E35
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BU of 7e35 by Molmil
Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutant bound to compound S43
Descriptor: N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide, Non-structural protein 3, ZINC ION
Authors:Liu, J, Wang, Y, Xu, X, Pan, L.
Deposit date:2021-02-08
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Development of potent and selective inhibitors targeting the papain-like protease of SARS-CoV-2.
Cell Chem Biol, 28, 2021
6LP2
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BU of 6lp2 by Molmil
Structure of Lpg2148/UBE2N-Ub complex
Descriptor: Ubiquitin, Ubiquitin-conjugating enzyme E2 N, Uncharacterized protein lpg2148
Authors:Feng, Y, Wang, Y, Huang, Y, Li, D.
Deposit date:2020-01-08
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.479 Å)
Cite:Structure of Lpg2148/UBE2N-Ub complex
To Be Published
6LW4
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BU of 6lw4 by Molmil
Structure of Lpg2148/Lpg2149 complex
Descriptor: Uncharacterized protein Lpg2148, Uncharacterized protein Lpg2149
Authors:Feng, Y, Wang, Y, Huang, Y, Li, D.
Deposit date:2020-02-07
Release date:2021-02-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Lpg2148/Lpg2149 complex
To Be Published
6BR1
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BU of 6br1 by Molmil
Tubulin-RB3_SLD-TTL in complex with heterocyclic pyrimidine compound 4a
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-chloro-4-(6-methoxy-3,4-dihydroquinolin-1(2H)-yl)pyrido[2,3-d]pyrimidine, CALCIUM ION, ...
Authors:Kumar, G, Wang, Y, Li, W, White, S.W.
Deposit date:2017-11-29
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Heterocyclic-Fused Pyrimidines as Novel Tubulin Polymerization Inhibitors Targeting the Colchicine Binding Site: Structural Basis and Antitumor Efficacy.
J. Med. Chem., 61, 2018
6BS2
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BU of 6bs2 by Molmil
Tubulin-RB3_SLD-TTL in complex with heterocyclic pyrimidine compound 8b
Descriptor: 1-(3,6-dimethyl[1,2]oxazolo[5,4-d]pyrimidin-4-yl)-6-methoxy-1,2,3,4-tetrahydroquinoline, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Kumar, G, Wang, Y, Li, W, White, S.W.
Deposit date:2017-12-01
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Heterocyclic-Fused Pyrimidines as Novel Tubulin Polymerization Inhibitors Targeting the Colchicine Binding Site: Structural Basis and Antitumor Efficacy.
J. Med. Chem., 61, 2018

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PDB entries from 2024-08-07

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