Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6VVE
DownloadVisualize
BU of 6vve by Molmil
Legionella pneumophila Lpg2603 kinase bound to IP6, Mn2+, and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Dot/Icm T4SS effector, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Tomchick, D.R, Tagliabracci, V.S, Park, B.C.
Deposit date:2020-02-17
Release date:2020-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:ALegionellaeffector kinase is activated by host inositol hexakisphosphate.
J.Biol.Chem., 295, 2020
4PKY
DownloadVisualize
BU of 4pky by Molmil
ARNT/HIF transcription factor/coactivator complex
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, SULFATE ION, ...
Authors:Tomchick, D.R, Partch, C.L, Gardner, K.H.
Deposit date:2014-05-15
Release date:2015-02-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Coiled-coil Coactivators Play a Structural Role Mediating Interactions in Hypoxia-inducible Factor Heterodimerization.
J.Biol.Chem., 290, 2015
4R39
DownloadVisualize
BU of 4r39 by Molmil
Histidine kinase domain from Erythrobacter litoralis EL346 blue-light activated histidine kinase
Descriptor: Blue-light-activated histidine kinase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Tomchick, D.R, Rivera-Cancel, G, Gardner, K.H.
Deposit date:2014-08-14
Release date:2014-12-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Full-length structure of a monomeric histidine kinase reveals basis for sensory regulation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4R8Q
DownloadVisualize
BU of 4r8q by Molmil
Structure and substrate recruitment of the human spindle checkpoint kinase bub1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Mitotic checkpoint serine/threonine-protein kinase BUB1
Authors:Tomchick, D.R, Yu, H.
Deposit date:2014-09-02
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structure and substrate recruitment of the human spindle checkpoint kinase Bub1.
Mol.Cell, 32, 2008
4R3A
DownloadVisualize
BU of 4r3a by Molmil
Erythrobacter litoralis EL346 blue-light activated histidine kinase
Descriptor: Blue-light-activated histidine kinase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Tomchick, D.R, Rivera-Cancel, G, Gardner, K.H.
Deposit date:2014-08-14
Release date:2014-12-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Full-length structure of a monomeric histidine kinase reveals basis for sensory regulation.
Proc.Natl.Acad.Sci.USA, 111, 2014
2QYF
DownloadVisualize
BU of 2qyf by Molmil
Crystal structure of the Mad2/p31(comet)/Mad2-binding peptide ternary complex
Descriptor: MAD2L1-binding protein, Mitotic spindle assembly checkpoint protein MAD2A, peptide
Authors:Tomchick, D.R, Luo, X.
Deposit date:2007-08-14
Release date:2008-01-29
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:p31comet blocks Mad2 activation through structural mimicry.
Cell(Cambridge,Mass.), 131, 2007
3BEN
DownloadVisualize
BU of 3ben by Molmil
Structure of N-(12-imidazolyl-dodecanoyl)-L-leucine inhibitor bound to the heme domain of Cytochrome P450-BM3
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cytochrome P450 102, MAGNESIUM ION, ...
Authors:Tomchick, D.R.
Deposit date:2007-11-19
Release date:2008-09-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of inhibitor-bound P450BM-3 reveals open conformation of substrate access channel.
Biochemistry, 47, 2008
6ANJ
DownloadVisualize
BU of 6anj by Molmil
Synaptotagmin-7, C2A domain
Descriptor: ACETATE ION, CALCIUM ION, Synaptotagmin-7, ...
Authors:Tomchick, D.R, Rizo, J, Voleti, R.
Deposit date:2017-08-13
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Exceptionally tight membrane-binding may explain the key role of the synaptotagmin-7 C2A domain in asynchronous neurotransmitter release.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6AO5
DownloadVisualize
BU of 6ao5 by Molmil
Crystal structure of human MST2 in complex with SAV1 SARAH domain
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Protein salvador homolog 1, ...
Authors:Tomchick, D.R, Luo, X, Ni, L.
Deposit date:2017-08-15
Release date:2017-11-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:SAV1 promotes Hippo kinase activation through antagonizing the PP2A phosphatase STRIPAK.
Elife, 6, 2017
6ANK
DownloadVisualize
BU of 6ank by Molmil
Synaptotagmin-7, C2A- and C2B-domains
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Synaptotagmin-7
Authors:Tomchick, D.R, Rizo, J, Voleti, R.
Deposit date:2017-08-13
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.254 Å)
Cite:Exceptionally tight membrane-binding may explain the key role of the synaptotagmin-7 C2A domain in asynchronous neurotransmitter release.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4M63
DownloadVisualize
BU of 4m63 by Molmil
Crystal Structure of a Filament-Like Actin Trimer Bound to the Bacterial Effector VopL
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin-5C, CALCIUM ION, ...
Authors:Tomchick, D.R, Zahm, J.A, Rosen, M.K.
Deposit date:2013-08-08
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.748 Å)
Cite:The Bacterial Effector VopL Organizes Actin into Filament-like Structures.
Cell(Cambridge,Mass.), 155, 2013
5UE8
DownloadVisualize
BU of 5ue8 by Molmil
The crystal structure of Munc13-1 C1C2BMUN domain
Descriptor: CHLORIDE ION, Protein unc-13 homolog A, ZINC ION
Authors:Tomchick, D.R, Rizo, J, Xu, J.
Deposit date:2016-12-29
Release date:2017-02-15
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Mechanistic insights into neurotransmitter release and presynaptic plasticity from the crystal structure of Munc13-1 C1C2BMUN.
Elife, 6, 2017
5UF7
DownloadVisualize
BU of 5uf7 by Molmil
CRYSTAL STRUCTURE OF MUNC13-1 MUN DOMAIN
Descriptor: Protein unc-13 homolog A
Authors:Tomchick, D.R, Rizo, J, Xu, J.
Deposit date:2017-01-03
Release date:2017-02-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.896 Å)
Cite:Mechanistic insights into neurotransmitter release and presynaptic plasticity from the crystal structure of Munc13-1 C1C2BMUN.
Elife, 6, 2017
3BND
DownloadVisualize
BU of 3bnd by Molmil
Lipoxygenase-1 (Soybean), I553V Mutant
Descriptor: FE (III) ION, Seed lipoxygenase-1
Authors:Tomchick, D.R.
Deposit date:2007-12-14
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Enzyme structure and dynamics affect hydrogen tunneling: the impact of a remote side chain (I553) in soybean lipoxygenase-1.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BNE
DownloadVisualize
BU of 3bne by Molmil
Lipoxygenase-1 (Soybean) I553A Mutant
Descriptor: FE (III) ION, Seed lipoxygenase-1
Authors:Tomchick, D.R.
Deposit date:2007-12-14
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enzyme structure and dynamics affect hydrogen tunneling: the impact of a remote side chain (I553) in soybean lipoxygenase-1.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BNB
DownloadVisualize
BU of 3bnb by Molmil
Lipoxygenase-1 (Soybean) I553L Mutant
Descriptor: FE (III) ION, Seed lipoxygenase-1
Authors:Tomchick, D.R.
Deposit date:2007-12-14
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Enzyme structure and dynamics affect hydrogen tunneling: the impact of a remote side chain (I553) in soybean lipoxygenase-1.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BNC
DownloadVisualize
BU of 3bnc by Molmil
Lipoxygenase-1 (Soybean) I553G Mutant
Descriptor: ACETIC ACID, FE (III) ION, Seed lipoxygenase-1
Authors:Tomchick, D.R.
Deposit date:2007-12-14
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Enzyme structure and dynamics affect hydrogen tunneling: the impact of a remote side chain (I553) in soybean lipoxygenase-1.
Proc.Natl.Acad.Sci.Usa, 105, 2008
4NPJ
DownloadVisualize
BU of 4npj by Molmil
Extended-Synaptotagmin 2, C2A- and C2B-domains
Descriptor: ACETATE ION, CHLORIDE ION, Extended synaptotagmin-2, ...
Authors:Tomchick, D.R, Rizo, J, Xu, J.
Deposit date:2013-11-21
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Structure and ca(2+)-binding properties of the tandem c2 domains of e-syt2.
Structure, 22, 2014
4ONR
DownloadVisualize
BU of 4onr by Molmil
Crystal structure of Borrelia burgdorferi decorin-binding protein DbpA
Descriptor: DECORIN-BINDING PROTEIN DbpA, NICKEL (II) ION
Authors:Tomchick, D.R, Deka, R.K, Blevins, J.S.
Deposit date:2014-01-28
Release date:2014-07-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Identification of Lysine Residues in the Borrelia burgdorferi DbpA Adhesin Required for Murine Infection.
Infect.Immun., 82, 2014
4NPK
DownloadVisualize
BU of 4npk by Molmil
Extended-Synaptotagmin 2, C2A- and C2B-domains, calcium bound
Descriptor: CALCIUM ION, Extended synaptotagmin-2
Authors:Tomchick, D.R, Rizo, J, Xu, J.
Deposit date:2013-11-21
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.552 Å)
Cite:Structure and ca(2+)-binding properties of the tandem c2 domains of e-syt2.
Structure, 22, 2014
3OBV
DownloadVisualize
BU of 3obv by Molmil
Autoinhibited Formin mDia1 Structure
Descriptor: Protein diaphanous homolog 1, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Tomchick, D.R, Rosen, M.K, Otomo, T.
Deposit date:2010-08-09
Release date:2010-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of the Formin mDia1 in autoinhibited conformation.
Plos One, 5, 2010
3PCR
DownloadVisualize
BU of 3pcr by Molmil
Structure of EspG-Arf6 complex
Descriptor: ADP-ribosylation factor 6, EspG, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Tomchick, D.R, Alto, N.M, Selyunin, A.S.
Deposit date:2010-10-21
Release date:2011-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The assembly of a GTPase-kinase signalling complex by a bacterial catalytic scaffold.
Nature, 469, 2011
3PCS
DownloadVisualize
BU of 3pcs by Molmil
Structure of EspG-PAK2 autoinhibitory Ialpha3 helix complex
Descriptor: EspG, Serine/threonine-protein kinase PAK 2
Authors:Tomchick, D.R, Alto, N.M, Selyunin, A.S.
Deposit date:2010-10-21
Release date:2011-01-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:The assembly of a GTPase-kinase signalling complex by a bacterial catalytic scaffold.
Nature, 469, 2011
3N5A
DownloadVisualize
BU of 3n5a by Molmil
Synaptotagmin-7, C2B-domain, calcium bound
Descriptor: CALCIUM ION, Synaptotagmin-7
Authors:Tomchick, D.R, Rizo, J, Craig, T.K.
Deposit date:2010-05-24
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.441 Å)
Cite:Structural and mutational analysis of functional differentiation between synaptotagmins-1 and -7.
Plos One, 5, 2010
4IFZ
DownloadVisualize
BU of 4ifz by Molmil
Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, Mn(II)-AMP product bound form
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2012-12-15
Release date:2013-02-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9012 Å)
Cite:The TP0796 Lipoprotein of Treponema pallidum Is a Bimetal-dependent FAD Pyrophosphatase with a Potential Role in Flavin Homeostasis.
J.Biol.Chem., 288, 2013

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon