Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8G0W
DownloadVisualize
BU of 8g0w by Molmil
Crystal structure of human norovirus GII.4 P domain in complex with Nanobody M4
Descriptor: Nanobody M4, VP1
Authors:Hu, L, Salmen, W, Sankaran, B, Prasad, B.V.V.
Deposit date:2023-02-01
Release date:2023-10-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Crystal structure of human norovirus GII.4 P domain in complex with Nanobody M4
To Be Published
6D0T
DownloadVisualize
BU of 6d0t by Molmil
De novo design of a fluorescence-activating beta barrel - BB1
Descriptor: BB1
Authors:Dou, J, Vorobieva, A.A, Sheffler, W, Doyle, L.A, Park, H, Bick, M.J, Mao, B, Foight, G.W, Lee, M, Carter, L, Sankaran, B, Ovchinnikov, S, Marcos, E, Huang, P, Vaughan, J.C, Stoddard, B.L, Baker, D.
Deposit date:2018-04-10
Release date:2018-09-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
5TRV
DownloadVisualize
BU of 5trv by Molmil
Crystal structure of a de novo designed protein with curved beta-sheet
Descriptor: DI(HYDROXYETHYL)ETHER, denovo NTF2
Authors:Basanta, B, Oberdorfer, G, Marcos, E, Chidyausiku, T.M, Sankaran, B, Baker, D.
Deposit date:2016-10-27
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Principles for designing proteins with cavities formed by curved beta sheets.
Science, 355, 2017
5TPJ
DownloadVisualize
BU of 5tpj by Molmil
Crystal structure of a de novo designed protein with curved beta-sheet
Descriptor: denovo NTF2
Authors:Basanta, B, Oberdorfer, G, Marcos, E, Chidyausiku, T.M, Sankaran, B, Baker, D.
Deposit date:2016-10-20
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Principles for designing proteins with cavities formed by curved beta sheets.
Science, 355, 2017
4QX5
DownloadVisualize
BU of 4qx5 by Molmil
Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: Insights for PKG agonist design
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, IODIDE ION, cGMP-dependent protein kinase 1
Authors:Huang, G.Y, Gerlits, O.O, Blakeley, M.P, Sankaran, B, Kovalevsky, A.Y, Kim, C.
Deposit date:2014-07-18
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.318 Å)
Cite:Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design.
Biochemistry, 53, 2014
4RVA
DownloadVisualize
BU of 4rva by Molmil
A triple mutant in the omega-loop of TEM-1 beta-lactamase changes the substrate profile via a large conformational change and an altered general base for deacylation
Descriptor: BICARBONATE ION, Beta-lactamase TEM
Authors:Stojanoski, V, Chow, D.-C, Hu, L, Sankaran, B, Gilbert, H, Prasad, B.V.V, Palzkill, T.
Deposit date:2014-11-25
Release date:2015-03-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4397 Å)
Cite:A Triple Mutant in the Omega-loop of TEM-1 beta-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis.
J.Biol.Chem., 290, 2015
4RX3
DownloadVisualize
BU of 4rx3 by Molmil
A triple mutant in the omega-loop of TEM-1 beta-lactamase changes the substrate profile via a large conformational change and an altered general base for catalysis
Descriptor: Beta-lactamase TEM, CITRATE ANION
Authors:Stojanoski, V, Chow, D, Hu, L, Sankaran, B, Gilbert, H, Prasad, B.V.V, Palzkill, T.
Deposit date:2014-12-08
Release date:2015-03-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:A Triple Mutant in the Omega-loop of TEM-1 beta-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis.
J.Biol.Chem., 290, 2015
4RX2
DownloadVisualize
BU of 4rx2 by Molmil
A triple mutant in the omega-loop of TEM-1 beta-lactamase changes the substrate profile via a large conformational change and an altered general base for catalysis
Descriptor: Beta-lactamase TEM, SULFATE ION
Authors:Stojanoski, V, Chow, D, Hu, L, Sankaran, B, Gilbert, H, Prasad, B.V.V, Palzkill, T.
Deposit date:2014-12-08
Release date:2015-03-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.315 Å)
Cite:A Triple Mutant in the Omega-loop of TEM-1 beta-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis.
J.Biol.Chem., 290, 2015
4W9N
DownloadVisualize
BU of 4w9n by Molmil
Enoyl-acyl carrier protein-reductase domain from human fatty acid synthase complexed with triclosan
Descriptor: CHLORIDE ION, Enoyl-[acyl-carrier-protein] reductase, IMIDAZOLE, ...
Authors:Sippel, K.H, Vyas, N.K, Sankaran, B, Quiocho, F.A.
Deposit date:2014-08-27
Release date:2014-10-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of the human Fatty Acid synthase enoyl-acyl carrier protein-reductase domain complexed with triclosan reveals allosteric protein-protein interface inhibition.
J.Biol.Chem., 289, 2014
5BW2
DownloadVisualize
BU of 5bw2 by Molmil
X-ray crystal structure of Aplysia californica acetylcholine binding protein (Ac-AChBP) Y55W in complex with 2-Pyridin-3-yl-1-aza-bicyclo[2.2.2]octane; 2-(3-pyridyl)quinuclidine; 2-PQ (TI-4699)
Descriptor: (2R)-2-(pyridin-3-yl)-1-azabicyclo[2.2.2]octane, Soluble acetylcholine receptor
Authors:Bobango, J, Sankaran, B, Park, J.F, Wu, J, Talley, T.T.
Deposit date:2015-06-05
Release date:2015-06-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Comparisons of Binding Affinities for Neuronal Nicotinic Receptors (NNRs) and AChBPs
To Be Published
5C6C
DownloadVisualize
BU of 5c6c by Molmil
PKG II's Amino Terminal Cyclic Nucleotide Binding Domain (CNB-A) in a complex with cAMP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CADMIUM ION, ...
Authors:Campbell, J.C, Reger, A.S, Huang, G.Y, Sankaran, B, Kim, J.J, Kim, C.W.
Deposit date:2015-06-22
Release date:2016-01-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Basis of Cyclic Nucleotide Selectivity in cGMP-dependent Protein Kinase II.
J.Biol.Chem., 291, 2016
5C67
DownloadVisualize
BU of 5c67 by Molmil
Human Mesotrypsin in complex with amyloid precursor protein inhibitor variant APPI-M17G/I18F/F34V
Descriptor: Amyloid beta A4 protein, Trypsin-3
Authors:Kayode, O, Sankaran, B, Radisky, E.S.
Deposit date:2015-06-22
Release date:2016-05-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Combinatorial protein engineering of proteolytically resistant mesotrypsin inhibitors as candidates for cancer therapy.
Biochem.J., 473, 2016
5C6X
DownloadVisualize
BU of 5c6x by Molmil
Crystal structure of C-As lyase with Co(II)
Descriptor: COBALT (II) ION, GLYCEROL, Glyoxalase/bleomycin resistance protein/dioxygenase, ...
Authors:Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
Deposit date:2015-06-23
Release date:2016-07-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of C-As lyase with Co(II)
To Be Published
5CB9
DownloadVisualize
BU of 5cb9 by Molmil
Crystal structure of C-As lyase with mercaptoethonal
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, Glyoxalase/bleomycin resistance protein/dioxygenase, ...
Authors:Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
Deposit date:2015-06-30
Release date:2016-07-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of C-As lyase with mercaptoethonal
To Be Published
5C8W
DownloadVisualize
BU of 5c8w by Molmil
PKG II's Amino Terminal Cyclic Nucleotide Binding Domain (CNB-A) in a complex with cGMP
Descriptor: CYCLIC GUANOSINE MONOPHOSPHATE, MALONIC ACID, SODIUM ION, ...
Authors:Campbell, J.C, Reger, A.S, Huang, G.Y, Sankaran, B, Kim, J.J, Kim, C.W.
Deposit date:2015-06-26
Release date:2016-01-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of Cyclic Nucleotide Selectivity in cGMP-dependent Protein Kinase II.
J.Biol.Chem., 291, 2016
5DRH
DownloadVisualize
BU of 5drh by Molmil
Crystal structure of apo C-As lyase
Descriptor: Glyoxalase/bleomycin resistance protein/dioxygenase, SODIUM ION
Authors:Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
Deposit date:2015-09-15
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of apo C-As lyase
To Be Published
5DFG
DownloadVisualize
BU of 5dfg by Molmil
Crystal structure of C-As lyase with mutations Y100H and V102F
Descriptor: Glyoxalase/bleomycin resistance protein/dioxygenase
Authors:Venkadesh, S, Yoshinaga, M, Kandavelu, P, Sankaran, B, Rosen, B.P.
Deposit date:2015-08-26
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9711 Å)
Cite:Crystal structure of C-As lyase with mutations Y100H and F102V
To Be Published
5D4F
DownloadVisualize
BU of 5d4f by Molmil
Crystal structure of C-As lyase with Fe(III)
Descriptor: CHLORIDE ION, FE (III) ION, Glyoxalase/bleomycin resistance protein/dioxygenase, ...
Authors:Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
Deposit date:2015-08-07
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of C-As lyase with mercaptoethonal
To Be Published
8TMT
DownloadVisualize
BU of 8tmt by Molmil
Crystal structure of KPC-44 carbapenemase in complex with vaborbactam
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, LITHIUM ION, ...
Authors:Sun, Z, Palzkill, T, Hu, L, Neetu, N, Lin, H, Sankaran, B, Wang, J, Prasad, B.
Deposit date:2023-07-30
Release date:2023-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TJM
DownloadVisualize
BU of 8tjm by Molmil
Crystal structure of KPC-44 carbapenemase
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, beta-lactamase
Authors:Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
Deposit date:2023-07-23
Release date:2023-12-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TMR
DownloadVisualize
BU of 8tmr by Molmil
Crystal structure of KPC-44 carbapenemase complexed with avibactam
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, PHOSPHATE ION, ...
Authors:Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
Deposit date:2023-07-30
Release date:2023-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TN0
DownloadVisualize
BU of 8tn0 by Molmil
Crystal structure of KPC-44 carbapenemase w/o cryoprotectant
Descriptor: SULFATE ION, beta-lactamase
Authors:Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
Deposit date:2023-07-31
Release date:2023-12-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
5EVJ
DownloadVisualize
BU of 5evj by Molmil
X-ray crystal structure of CrArsM, an arsenic (III) S-adenosylmethionine methyltransferase from Chlamydomonas reinhardtii
Descriptor: Arsenite methyltransferase, SODIUM ION
Authors:Packianathan, C, Kandavelu, P, Sankaran, B, Rosen, B.P.
Deposit date:2015-11-19
Release date:2016-11-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of CrArsM, an arsenic (III) S-adenosylmethionine methyltransferase from Chlamydomonas reinhardtii
To Be Published
5L33
DownloadVisualize
BU of 5l33 by Molmil
Crystal structure of a de novo designed protein with curved beta-sheet
Descriptor: denovo NTF2
Authors:Oberdorfer, G, Marcos, E, Basanta, B, Chidyausiku, T.M, Sankaran, B, Baker, D.
Deposit date:2016-08-03
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Principles for designing proteins with cavities formed by curved beta sheets.
Science, 355, 2017
4PMA
DownloadVisualize
BU of 4pma by Molmil
Crystal structure of CTX-M-14 S70G:S237A:R276A beta-lactamase at 1.39 Angstroms resolution
Descriptor: Beta-lactamase CTX-M-14, SULFATE ION
Authors:Cardenas, A.M, Adamski, C.J, Brown, N.G, Horton, L.B, Sankaran, B, Palzkill, T.
Deposit date:2014-05-20
Release date:2014-12-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Molecular Basis for the Catalytic Specificity of the CTX-M Extended-Spectrum beta-Lactamases.
Biochemistry, 54, 2015

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon