Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5ZHE
DownloadVisualize
BU of 5zhe by Molmil
STRUCTURE OF E. COLI UNDECAPRENYL DIPHOSPHATE SYNTHASE IN COMPLEX WITH BPH-981
Descriptor: 2-hydroxy-6-(tetradecyloxy)benzoic acid, Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Authors:Gao, J, Liu, W.D, Zheng, Y.Y, Ko, T.P, Chen, C.C, Guo, R.T.
Deposit date:2018-03-13
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Discovery of Lipophilic Bisphosphonates That Target Bacterial Cell Wall and Quinone Biosynthesis.
J.Med.Chem., 62, 2019
1B4T
DownloadVisualize
BU of 1b4t by Molmil
H48C YEAST CU(II)/ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298K) STRUCTURE
Descriptor: CHLORIDE ION, COPPER (II) ION, PROTEIN (CU/ZN SUPEROXIDE DISMUTASE), ...
Authors:Hart, P.J, Balbirnie, M.M, Ogihara, N.L, Nersissian, A.M, Weiss, M.S, Valentine, J.S, Eisenberg, D.
Deposit date:1998-12-23
Release date:1999-12-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structure-based mechanism for copper-zinc superoxide dismutase.
Biochemistry, 38, 1999
4GB9
DownloadVisualize
BU of 4gb9 by Molmil
Potent and Highly Selective Benzimidazole Inhibitors of PI3K-delta
Descriptor: 2-[1-({2-[2-(dimethylamino)-1H-benzimidazol-1-yl]-9-methyl-6-(morpholin-4-yl)-9H-purin-8-yl}methyl)piperidin-4-yl]propan-2-ol, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Authors:Murray, J.M.
Deposit date:2012-07-26
Release date:2012-08-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.438 Å)
Cite:Potent and highly selective benzimidazole inhibitors of PI3-kinase delta.
J.Med.Chem., 55, 2012
5YZP
DownloadVisualize
BU of 5yzp by Molmil
Crystal structure of p204 HINa domain
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Ifi204
Authors:Jin, T.
Deposit date:2017-12-15
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:Structural mechanism of DNA recognition by the p204 HIN domain.
Nucleic Acids Res., 2021
6KNZ
DownloadVisualize
BU of 6knz by Molmil
Crystal structure of T2R-TTL-KXO1 complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-[5-[4-(2-morpholin-4-ylethoxy)phenyl]pyridin-2-yl]-~{N}-(phenylmethyl)ethanamide, CALCIUM ION, ...
Authors:Chen, Q, Yu, Y.
Deposit date:2019-08-07
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.475 Å)
Cite:Reversible binding of the anticancer drug KXO1 (tirbanibulin) to the colchicine-binding site of beta-tubulin explains KXO1's low clinical toxicity.
J.Biol.Chem., 294, 2019
3G08
DownloadVisualize
BU of 3g08 by Molmil
Crystal structure of the alpha-galactosylceramide analog OCH in complex with mouse CD1d
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2 microglobulin, ...
Authors:Zajonc, D.M.
Deposit date:2009-01-27
Release date:2009-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mechanisms for glycolipid antigen-driven cytokine polarization by Valpha14i NKT cells.
J.Immunol., 184, 2010
1L0Q
DownloadVisualize
BU of 1l0q by Molmil
Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein
Descriptor: Surface layer protein
Authors:Jing, H, Takagi, J, Liu, J.-H, Lindgren, S, Zhang, R.-G, Joachimiak, A, Wang, J.-H, Springer, T.A.
Deposit date:2002-02-12
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Archaeal Surface Layer Proteins Contain beta Propeller, PKD, and beta Helix Domains and Are Related to Metazoan Cell Surface Proteins.
Structure, 10, 2002
6JUJ
DownloadVisualize
BU of 6juj by Molmil
Crystal structure of Formate dehydrogenase mutant V198I/C256I/P260S/E261P/S381N/S383F from Pseudomonas sp. 101in complex with non-natural cofactor Nicotinamide Cytosine Dinucleotide
Descriptor: Formate dehydrogenase, GLYCEROL, [[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Feng, Y, Guo, X, Xue, S, Zhao, Z.
Deposit date:2019-04-14
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.183 Å)
Cite:Structure-Guided Design of Formate Dehydrogenase for Regeneration of a Non-Natural Redox Cofactor.
Chemistry, 26, 2020
5Z34
DownloadVisualize
BU of 5z34 by Molmil
The structure of a chitin deacetylase from Bombyx mori provide the first insight into insect chitin deacetylation mechanism
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin deacetylase, ZINC ION
Authors:Liu, L, Zhou, Y, Yang, Q.
Deposit date:2018-01-05
Release date:2019-02-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:The structure of a chitin deacetylase from Bombyx mori provide the first insight into insect chitin deacetylation mechanism
To Be Published
1B4L
DownloadVisualize
BU of 1b4l by Molmil
15 ATMOSPHERE OXYGEN YEAST CU/ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298K) STRUCTURE
Descriptor: COPPER (II) ION, PROTEIN (CU/ZN SUPEROXIDE DISMUTASE), ZINC ION
Authors:Hart, P.J, Balbirnie, M.M, Ogihara, N.L, Nersissian, A.M, Weiss, M.S, Valentine, J.S, Eisenberg, D.
Deposit date:1998-12-22
Release date:1999-12-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structure-based mechanism for copper-zinc superoxide dismutase.
Biochemistry, 38, 1999
6DND
DownloadVisualize
BU of 6dnd by Molmil
Crystal structure of wild-type (WT) human Glutamate oxaloacetate transaminase 1 (GOT1)
Descriptor: Aspartate aminotransferase, cytoplasmic, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Assar, Z, Holt, M.C, Stein, A.J, Lairson, L, Lyssiotis, C.A.
Deposit date:2018-06-06
Release date:2018-11-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors.
Biochemistry, 57, 2018
4PDB
DownloadVisualize
BU of 4pdb by Molmil
CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER
Descriptor: 30S ribosomal protein S8, SELEX RNA aptamer
Authors:Davlieva, M, Shamoo, Y, Nikonowicz, E.P.
Deposit date:2014-04-17
Release date:2014-09-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.
Nucleic Acids Res., 42, 2014
4ZE9
DownloadVisualize
BU of 4ze9 by Molmil
Se-PBP AccA from A. tumefaciens C58 in complex with agrocinopine A
Descriptor: 2-O-phosphono-alpha-L-arabinopyranose, ABC transporter substrate-binding protein, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:El Sahili, A, Guimaraes, B.G, Morera, S.
Deposit date:2015-04-20
Release date:2015-08-19
Last modified:2023-06-14
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens.
Plos Pathog., 11, 2015
6DHK
DownloadVisualize
BU of 6dhk by Molmil
Bovine glutamate dehydrogenase complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Glutamate dehydrogenase 1, mitochondrial
Authors:Smith, T.J.
Deposit date:2018-05-20
Release date:2018-07-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation.
Biochemistry, 42, 2003
6K9V
DownloadVisualize
BU of 6k9v by Molmil
Crystal structure of tubulin in complex with inhibitor D64
Descriptor: (5-methoxy-1H-indol-2-yl)-phenyl-methanone, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Yu, Y, Chen, Q.
Deposit date:2019-06-18
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.543 Å)
Cite:Structural insights into the design of indole derivatives as tubulin polymerization inhibitors.
Febs Lett., 594, 2020
5LA7
DownloadVisualize
BU of 5la7 by Molmil
Crystal structure of human proheparanase, in complex with glucuronic acid configured aziridine probe JJB355
Descriptor: (1~{S},2~{R},3~{S},4~{S},5~{S},6~{R})-2-(8-azidooctylamino)-3,4,5,6-tetrakis(oxidanyl)cyclohexane-1-carboxylic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wu, L, Jin, Y, Davies, G.J.
Deposit date:2016-06-13
Release date:2017-05-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Activity-based probes for functional interrogation of retaining beta-glucuronidases.
Nat. Chem. Biol., 13, 2017
6DNB
DownloadVisualize
BU of 6dnb by Molmil
Crystal structure of T110A:S256A mutant human Glutamate oxaloacetate transaminase 1 (GOT1)
Descriptor: Aspartate aminotransferase, cytoplasmic, GLYCEROL, ...
Authors:Assar, Z, Holt, M.C, Stein, A.J, Lairson, L, Lyssiotis, C.A.
Deposit date:2018-06-06
Release date:2018-11-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors.
Biochemistry, 57, 2018
5FPO
DownloadVisualize
BU of 5fpo by Molmil
Structure of Bacterial DNA Ligase with small-molecule ligand 1H- indazol-7-amine (AT4213) in an alternate binding site.
Descriptor: 1H-indazol-7-amine, DNA LIGASE
Authors:Jhoti, H, Ludlow, R.F, Pathuri, P, Saini, H.K, Tickle, I.J, Tisi, D, Verdonk, M, Williams, P.A.
Deposit date:2015-12-02
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Detection of Secondary Binding Sites in Proteins Using Fragment Screening.
Proc.Natl.Acad.Sci.USA, 112, 2015
5VRH
DownloadVisualize
BU of 5vrh by Molmil
Apolipoprotein N-acyltransferase C387S active site mutant
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Apolipoprotein N-acyltransferase, ...
Authors:Murray, J.M, Noland, C.L.
Deposit date:2017-05-10
Release date:2017-07-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.137 Å)
Cite:Structural insights into lipoprotein N-acylation by Escherichia coli apolipoprotein N-acyltransferase.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4ZED
DownloadVisualize
BU of 4zed by Molmil
PBP AccA from A. tumefaciens C58 in complex with agrocinopine-3'-O-benzoate
Descriptor: 1,2-ETHANEDIOL, ABC transporter, substrate binding protein (Agrocinopines A and B), ...
Authors:El Sahili, A, Morera, S.
Deposit date:2015-04-20
Release date:2015-08-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens.
Plos Pathog., 11, 2015
7WWB
DownloadVisualize
BU of 7wwb by Molmil
Choline transporter-like protein 1
Descriptor: CHOLESTEROL, CHOLINE ION, Choline transporter-like protein 1
Authors:Chi, X.M, Zhou, Q.
Deposit date:2022-02-12
Release date:2022-06-22
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Rational exploration of fold atlas for human solute carrier proteins.
Structure, 30, 2022
2BM0
DownloadVisualize
BU of 2bm0 by Molmil
Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant T84A
Descriptor: ELONGATION FACTOR G, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Hansson, S, Singh, R, Gudkov, A.T, Liljas, A, Logan, D.T.
Deposit date:2005-03-09
Release date:2005-05-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insights Into Fusidic Acid Resistance and Sensitivity in EF-G
J.Mol.Biol., 348, 2005
2BM1
DownloadVisualize
BU of 2bm1 by Molmil
Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant G16V
Descriptor: ELONGATION FACTOR G, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Hansson, S, Singh, R, Gudkov, A.T, Liljas, A, Logan, D.T.
Deposit date:2005-03-09
Release date:2005-05-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Insights Into Fusidic Acid Resistance and Sensitivity in EF-G
J.Mol.Biol., 348, 2005
5TYI
DownloadVisualize
BU of 5tyi by Molmil
Grb7 SH2 with bicyclic peptide containing pY mimetic
Descriptor: Growth factor receptor-bound protein 7, Peptide inhibitor
Authors:Watson, G.M, Wilce, M.C.J, Wilce, J.A.
Deposit date:2016-11-20
Release date:2017-11-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery, Development, and Cellular Delivery of Potent and Selective Bicyclic Peptide Inhibitors of Grb7 Cancer Target.
J. Med. Chem., 60, 2017
5YZW
DownloadVisualize
BU of 5yzw by Molmil
Crystal structure of p204 HINb domain
Descriptor: Ifi204
Authors:Jin, T.
Deposit date:2017-12-15
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural mechanism of DNA recognition by the p204 HIN domain.
Nucleic Acids Res., 2021

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon