Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5ND3
DownloadVisualize
BU of 5nd3 by Molmil
Microtubule-bound MKLP2 motor domain in the with no nucleotide
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Kinesin-like protein KIF20A, ...
Authors:Atherton, J, Yu, I.M, Cook, A, Muretta, J.M, Joseph, A.P, Major, J, Sourigues, Y, Clause, J, Topf, M, Rosenfeld, S.S, Houdusse, A, Moores, C.A.
Deposit date:2017-03-07
Release date:2017-10-04
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:The divergent mitotic kinesin MKLP2 exhibits atypical structure and mechanochemistry.
Elife, 6, 2017
3ZWE
DownloadVisualize
BU of 3zwe by Molmil
Structure of BambL, a lectin from Burkholderia ambifaria, complexed with blood group B epitope
Descriptor: BAMBL LECTIN, alpha-L-fucopyranose, alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Audfray, A, Claudinon, J, Abounit, S, Ruvoen-Clouet, N, Larson, G, Wimmerova, M, LePendu, J, Romer, W, Varrot, A, Imberty, A.
Deposit date:2011-07-29
Release date:2011-12-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Fucose-Binding Lectin from Opportunistic Pathogen Burkholderia Ambifaria Binds to Both Plant and Human Oligosaccharidic Epitopes.
J.Biol.Chem., 287, 2012
3ZW2
DownloadVisualize
BU of 3zw2 by Molmil
Structure of the lectin Bambl from Burkholderia ambifaria in complex with blood group H type 1 tetrasaccharide
Descriptor: BAMBL LECTIN, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Audfray, A, Claudinon, J, Abounit, S, Ruvoen-Clouet, N, Larson, G, Wimmerova, M, Lependu, J, Romer, W, Varrot, A, Imberty, A.
Deposit date:2011-07-28
Release date:2011-11-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fucose-Binding Lectin from Opportunistic Pathogen Burkholderia Ambifaria Binds to Both Plant and Human Oligosaccharidic Epitopes.
J.Biol.Chem., 287, 2012
3ZW0
DownloadVisualize
BU of 3zw0 by Molmil
Structure of BambL lectin from Burkholderia ambifaria
Descriptor: BAMBL LECTIN, alpha-L-fucopyranose
Authors:Audfray, A, Claudinon, J, Abounit, S, Ruvoen-Clouet, N, Larson, G, Wimmerova, M, LePendu, J, Romer, W, Varrot, A, Imberty, A.
Deposit date:2011-07-28
Release date:2011-12-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fucose-Binding Lectin from Opportunistic Pathogen Burkholderia Ambifaria Binds to Both Plant and Human Oligosaccharidic Epitopes.
J.Biol.Chem., 287, 2012
3ZZV
DownloadVisualize
BU of 3zzv by Molmil
BambL complexed with Htype2 tetrasaccharide
Descriptor: BAMBL LECTIN, alpha-L-fucopyranose, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Audfray, A, Claudinon, J, Abounit, S, Ruvoen-Clouet, N, Larson, G, Wimmerova, M, LePendu, J, Romer, W, Varrot, A, Imberty, A.
Deposit date:2011-09-05
Release date:2011-12-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Fucose-Binding Lectin from Opportunistic Pathogen Burkholderia Ambifaria Binds to Both Plant and Human Oligosaccharidic Epitopes.
J.Biol.Chem., 287, 2012
3ZI8
DownloadVisualize
BU of 3zi8 by Molmil
Structure of the R17A mutant of the Ralstonia soleanacerum lectin at 1.5 Angstrom in complex with L-fucose
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, MAGNESIUM ION, PUTATIVE FUCOSE-BINDING LECTIN PROTEIN, ...
Authors:Arnaud, J, Audfray, A, Claudinon, J, Trondle, K, Trosvalet, M, Thomas, A, Varrot, A, Romer, W, Imberty, A.
Deposit date:2013-01-07
Release date:2013-07-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Reduction of Lectin Valency Drastically Changes Glycolipid Dynamics in Membranes, But not Surface Avidity.
Acs Chem.Biol., 8, 2013
5OHX
DownloadVisualize
BU of 5ohx by Molmil
Structure of active cystathionine B-synthase from Apis mellifera
Descriptor: Cystathionine beta-synthase, PROTOPORPHYRIN IX CONTAINING FE, PYRIDOXAL-5'-PHOSPHATE
Authors:Gimenez-Mascarell, P, Majtan, T, Oyenarte, I, Ereno-Orbea, J, Majtan, J, Kraus, J.P, Klaudiny, J, Martinez-Cruz, L.A.
Deposit date:2017-07-18
Release date:2018-01-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of cystathionine beta-synthase from honeybee Apis mellifera.
J. Struct. Biol., 202, 2018
4CSD
DownloadVisualize
BU of 4csd by Molmil
Structure of Monomeric Ralstonia solanacearum lectin
Descriptor: FUCOSE-BINDING LECTIN PROTEIN, GLYCEROL, methyl alpha-L-fucopyranoside
Authors:Arnaud, J, Trundle, K, Claudinon, J, Audfray, A, Varrot, A, Romer, W, Imberty, A.
Deposit date:2014-03-06
Release date:2014-10-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Membrane Deformation by Neolectins with Engineered Glycolipid Binding Sites.
Angew.Chem.Int.Ed.Engl., 53, 2014
5EJR
DownloadVisualize
BU of 5ejr by Molmil
Structure of Dictyostelium Discoideum Myosin VII MyTH4-FERM MF2 domain
Descriptor: 1,2-ETHANEDIOL, Myosin-I heavy chain
Authors:Planelles-Herrero, V.J, Sirkia, H, Sourigues, Y, Clause, J, Titus, M.A, Houdusse, A.
Deposit date:2015-11-02
Release date:2016-07-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Myosin MyTH4-FERM structures highlight important principles of convergent evolution.
Proc.Natl.Acad.Sci.USA, 113, 2016
2PP4
DownloadVisualize
BU of 2pp4 by Molmil
Solution Structure of ETO-TAFH refined in explicit solvent
Descriptor: Protein ETO
Authors:Wei, Y, Liu, S, Lausen, J, Woodrell, C, Cho, S, Biris, N, Kobayashi, N, Yokoyama, S, Werner, M.H.
Deposit date:2007-04-27
Release date:2007-06-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A TAF4-homology domain from the corepressor ETO is a docking platform for positive and negative regulators of transcription
Nat.Struct.Mol.Biol., 14, 2007
1TQB
DownloadVisualize
BU of 1tqb by Molmil
Ovine recombinant PrP(114-234), VRQ variant in complex with the Fab of the VRQ14 antibody
Descriptor: VRQ14 Fab Heavy chain, VRQ14 Fab light chain, prion protein
Authors:Eghiaian, F, Grosclaude, J, Debey, P, Doublet, B, Treguer, E, Rezaei, H, Knossow, M.
Deposit date:2004-06-17
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Insight into the PrPC-->PrPSc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants
Proc.Natl.Acad.Sci.USA, 101, 2004
1TQC
DownloadVisualize
BU of 1tqc by Molmil
Ovine recombinant PrP(114-234), ARR variant in complex with the VRQ14 Fab fragment (IgG2a)
Descriptor: VRQ14 Fab Heavy chain, VRQ14 Fab light chain, prion protein
Authors:Eghiaian, F, Grosclaude, J, Lesceu, S, Debey, P, Doublet, B, Treguer, E, Rezaei, H, Knossow, M.
Deposit date:2004-06-17
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Insight into the PrPC-->PrPSc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants
Proc.Natl.Acad.Sci.USA, 101, 2004
1TPX
DownloadVisualize
BU of 1tpx by Molmil
Ovine recombinant PrP(114-234), ARQ variant in complex with the Fab of the VRQ14 antibody
Descriptor: major prion protein, the VRQ14 Fab
Authors:Eghiaian, F, Grosclaude, J, Lesceu, S, Debey, P, Doublet, B, Treguer, E, Rezaei, H, Knossow, M.
Deposit date:2004-06-16
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Insight into the PrPC -> PrPSc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants.
Proc.Natl.Acad.Sci.USA, 101, 2004
4ZGM
DownloadVisualize
BU of 4zgm by Molmil
Crystal structure of Semaglutide peptide backbone in complex with the GLP-1 receptor extracellular domain
Descriptor: 3,6,9,12,15,18-hexaoxahexacosan-1-ol, Glucagon-like peptide 1 receptor, Semaglutide peptide backbone; 8Aib,34R-GLP-1(7-37)-OH
Authors:Reedtz-Runge, S.
Deposit date:2015-04-23
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of the Once-Weekly Glucagon-Like Peptide-1 (GLP-1) Analogue Semaglutide.
J.Med.Chem., 58, 2015
5TW5
DownloadVisualize
BU of 5tw5 by Molmil
Structure of mouse CD1d with bound glycosphingolipid JJ112
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Zajonc, D.M, Wang, J.
Deposit date:2016-11-11
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Galactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d.
Sci Rep, 7, 2017
5TW2
DownloadVisualize
BU of 5tw2 by Molmil
Structure of mouse CD1d with bound alpha-galactosylsphingamide JG168
Descriptor: (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zajonc, D.M, Wang, J.
Deposit date:2016-11-11
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Galactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d.
Sci Rep, 7, 2017
8B6D
DownloadVisualize
BU of 8b6d by Molmil
Crystal structure of UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070 in complex with UDP
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, SODIUM ION, ...
Authors:Laustsen, J, Kumpf, A, Bento, I.
Deposit date:2022-09-27
Release date:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure determination of a highly active UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070
To Be Published
5GL6
DownloadVisualize
BU of 5gl6 by Molmil
Msmeg rimP
Descriptor: Ribosome maturation factor RimP
Authors:Chu, T, Lau, T.C.K.
Deposit date:2016-07-08
Release date:2017-07-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The ribosomal maturation factor P fromMycobacterium smegmatisfacilitates the ribosomal biogenesis by binding to the small ribosomal protein S12.
J. Biol. Chem., 294, 2019
6AY2
DownloadVisualize
BU of 6ay2 by Molmil
Structure of CathB with covalently linked Compound 28
Descriptor: Cathepsin B, N~1~-[(2S)-1-amino-5-(carbamoylamino)pentan-2-yl]-N'~1~-[(1R)-1-(thiophen-3-yl)ethyl]cyclobutane-1,1-dicarboxamide
Authors:Kiefer, J.R, Steinbacher, S.
Deposit date:2017-09-07
Release date:2017-12-27
Last modified:2018-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery of Peptidomimetic Antibody-Drug Conjugate Linkers with Enhanced Protease Specificity.
J. Med. Chem., 61, 2018
5CQ2
DownloadVisualize
BU of 5cq2 by Molmil
Crystal Structure of tandem WW domains of ITCH in complex with TXNIP peptide
Descriptor: E3 ubiquitin-protein ligase Itchy homolog, Thioredoxin-interacting protein, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2015-07-21
Release date:2015-09-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis for the regulatory role of the PPxY motifs in the thioredoxin-interacting protein TXNIP.
Biochem.J., 473, 2016
5DF6
DownloadVisualize
BU of 5df6 by Molmil
Crystal structure of PTPN11 tandem SH2 domains in complex with a TXNIP peptide
Descriptor: Tyrosine-protein phosphatase non-receptor type 11, UNKNOWN ATOM OR ION, txnip
Authors:Dong, A, Li, W, Tempel, W, Liu, Y, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2015-08-26
Release date:2015-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural basis for the regulatory role of the PPxY motifs in the thioredoxin-interacting protein TXNIP.
Biochem.J., 473, 2016
3C5T
DownloadVisualize
BU of 3c5t by Molmil
Crystal structure of the ligand-bound glucagon-like peptide-1 receptor extracellular domain
Descriptor: Exendin-4, Glucagon-like peptide 1 receptor, decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside
Authors:Runge, S.
Deposit date:2008-02-01
Release date:2008-02-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of the Ligand-bound Glucagon-like Peptide-1 Receptor Extracellular Domain
J.Biol.Chem., 283, 2008
3C59
DownloadVisualize
BU of 3c59 by Molmil
Crystal structure of the ligand-bound glucagon-like peptide-1 receptor extracellular domain
Descriptor: Exendin-4, Glucagon-like peptide 1 receptor, decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside
Authors:Runge, S.
Deposit date:2008-01-31
Release date:2008-02-19
Last modified:2018-05-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the Ligand-bound Glucagon-like Peptide-1 Receptor Extracellular Domain
J.Biol.Chem., 283, 2008
8CP6
DownloadVisualize
BU of 8cp6 by Molmil
Type six secretion system exported effector 5 (Tse5)
Descriptor: Toxin protein Tse5
Authors:Gonzalez-Magana, A, Tascon, I, Ubarretxena-Belandia, I, Albesa-Jove, D.
Deposit date:2023-03-01
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:Structural and functional insights into the delivery of a bacterial Rhs pore-forming toxin to the membrane.
Nat Commun, 14, 2023
8A3O
DownloadVisualize
BU of 8a3o by Molmil
Structure of human Fy-4
Descriptor: Quinone oxidoreductase-like protein 1
Authors:Schuhmacher, J.S, Zerial, M.
Deposit date:2022-06-08
Release date:2022-06-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of mRNA binding by the human FERRY Rab5 effector complex.
Mol.Cell, 83, 2023

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon