Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8Y5B
DownloadVisualize
BU of 8y5b by Molmil
Crystal structure of TRIM21 PRYSPRY (D355A) in complex with (R)-hydroxyl-acepromazine.
Descriptor: (1~{R})-1-[10-[3-(dimethylamino)propyl]phenothiazin-2-yl]ethanol, E3 ubiquitin-protein ligase TRIM21
Authors:Lu, P, Cheng, Y, Xue, L, Ren, X, Huang, N, Han, T.
Deposit date:2024-01-31
Release date:2024-10-09
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Selective degradation of multimeric proteins by TRIM21-based molecular glue and PROTAC degraders.
Cell, 187, 2024
8CX9
DownloadVisualize
BU of 8cx9 by Molmil
Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an unusual allosteric mechanism
Descriptor: BROMIDE ION, CHLORIDE ION, Papain-like protease nsp3, ...
Authors:Singer, A.U, Slater, C.L, Patel, A, Russel, R, Mark, B.L, Sidhu, S.S.
Deposit date:2022-05-20
Release date:2023-01-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Ubiquitin variants potently inhibit SARS-CoV-2 PLpro and viral replication via a novel site distal to the protease active site.
Plos Pathog., 18, 2022
6J3P
DownloadVisualize
BU of 6j3p by Molmil
Crystal structure of the human GCN5 bromodomain in complex with compound (R,R)-36n
Descriptor: 2-{[(3R,5R)-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methylpiperidin-3-yl]amino}-3-methyl-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one, Histone acetyltransferase KAT2A
Authors:Huang, L.Y, Li, H, Niu, L, Wu, C.Y, Yu, Y.M, Li, L.L, Yang, S.Y.
Deposit date:2019-01-05
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Discovery of Pyrrolo[3,2- d]pyrimidin-4-one Derivatives as a New Class of Potent and Cell-Active Inhibitors of P300/CBP-Associated Factor Bromodomain.
J.Med.Chem., 62, 2019
6J3O
DownloadVisualize
BU of 6j3o by Molmil
Crystal structure of the human PCAF bromodomain in complex with compound 12
Descriptor: 3-methyl-2-[[(3~{R})-1-methylpiperidin-3-yl]amino]-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one, Histone acetyltransferase KAT2B
Authors:Huang, L.Y, Li, H, Li, L.L, Niu, L, Seupel, R, Wu, C.Y, Li, G.B, Yu, Y.M, Brennan, P.E, Yang, S.Y.
Deposit date:2019-01-05
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Discovery of Pyrrolo[3,2- d]pyrimidin-4-one Derivatives as a New Class of Potent and Cell-Active Inhibitors of P300/CBP-Associated Factor Bromodomain.
J.Med.Chem., 62, 2019
4OA7
DownloadVisualize
BU of 4oa7 by Molmil
Crystal structure of Tankyrase1 in complex with IWR1
Descriptor: 4-[(3aR,4R,7S,7aS)-1,3-dioxo-1,3,3a,4,7,7a-hexahydro-2H-4,7-methanoisoindol-2-yl]-N-(quinolin-8-yl)benzamide, Tankyrase-1, ZINC ION
Authors:Zhang, X, He, H.
Deposit date:2014-01-03
Release date:2015-01-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Disruption of Wnt/ beta-Catenin Signaling and Telomeric Shortening Are Inextricable Consequences of Tankyrase Inhibition in Human Cells.
Mol.Cell.Biol., 35, 2015
5X8I
DownloadVisualize
BU of 5x8i by Molmil
Crystal structure of human CLK1 in complex with compound 25
Descriptor: 5-[1-[(1S)-1-(4-fluorophenyl)ethyl]-[1,2,3]triazolo[4,5-c]quinolin-8-yl]-1,3-benzoxazole, Dual specificity protein kinase CLK1
Authors:Sun, Q.Z, Lin, G.F, Li, L.L, Jin, X.T, Huang, L.Y, Zhang, G, Wei, Y.Q, Lu, G.W, Yang, S.Y.
Deposit date:2017-03-02
Release date:2017-08-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Discovery of Potent and Selective Inhibitors of Cdc2-Like Kinase 1 (CLK1) as a New Class of Autophagy Inducers
J. Med. Chem., 60, 2017
2M75
DownloadVisualize
BU of 2m75 by Molmil
The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Recognitions of Integrins
Descriptor: Zinc metalloproteinase/disintegrin
Authors:Chuang, W, Chang, Y, Shiu, J.
Deposit date:2013-04-18
Release date:2013-05-22
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Recognitions of Integrins
To be Published
2M7H
DownloadVisualize
BU of 2m7h by Molmil
The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Integrin alpha-IIb beta-3 Recognition
Descriptor: Zinc metalloproteinase/disintegrin
Authors:Chuang, W, Chang, Y.
Deposit date:2013-04-22
Release date:2013-05-22
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Recognitions of Integrins
To be Published
2M7F
DownloadVisualize
BU of 2m7f by Molmil
The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Integrins Recognitions
Descriptor: Zinc metalloproteinase/disintegrin
Authors:Chuang, W, Chang, Y.
Deposit date:2013-04-22
Release date:2013-05-22
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Recognitions of Integrins
To be Published
5A2T
DownloadVisualize
BU of 5a2t by Molmil
The Molecular Basis for Flexibility in the Flexible Filamentous Plant Viruses
Descriptor: BAMBOO MOSAIC VIRUS, COAT PROTEIN
Authors:DiMaio, F, Chen, C.C, Yu, X, Frenz, B, Hsu, Y.H, Lin, N.S, Egelman, E.H.
Deposit date:2015-05-23
Release date:2015-07-22
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:The Molecular Basis for Flexibility in the Flexible Filamentous Plant Viruses.
Nat.Struct.Mol.Biol., 22, 2015
3BYQ
DownloadVisualize
BU of 3byq by Molmil
Crystal structure of a duf1185 family protein (bb2672) from bordetella bronchiseptica rb50 at 1.70 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, TETRAETHYLENE GLYCOL, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-01-16
Release date:2008-01-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
Acta Crystallogr.,Sect.F, 66, 2010
4KSY
DownloadVisualize
BU of 4ksy by Molmil
Crystal structure of STING in complex with cGAMP
Descriptor: Stimulator of interferon genes protein, cGAMP
Authors:Zhang, X, Chen, Z.J, Zhang, X.W.
Deposit date:2013-05-18
Release date:2013-06-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.881 Å)
Cite:Cyclic GMP-AMP Containing Mixed Phosphodiester Linkages Is An Endogenous High-Affinity Ligand for STING.
Mol.Cell, 51, 2013
3B77
DownloadVisualize
BU of 3b77 by Molmil
Crystal structure of a ph domain containing bacterial protein (exig_2160) from exiguobacterium sibiricum 255-15 at 2.42 A resolution
Descriptor: Uncharacterized protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2007-10-30
Release date:2007-11-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain.
J.Mol.Biol., 396, 2010
5ZXD
DownloadVisualize
BU of 5zxd by Molmil
Crystal structure of ATP-bound human ABCF1
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-binding cassette sub-family F member 1
Authors:Qu, L, Jiang, Y, Liu, Z.J.
Deposit date:2018-05-18
Release date:2018-07-25
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.288 Å)
Cite:Crystal Structure of ATP-Bound Human ABCF1 Demonstrates a Unique Conformation of ABC Proteins
Structure, 26, 2018
2JTC
DownloadVisualize
BU of 2jtc by Molmil
3D structure and backbone dynamics of SPE B
Descriptor: Streptopain
Authors:Chuang, W, Wang, C, Houng, H, Chen, C, Wang, P.
Deposit date:2007-07-26
Release date:2008-08-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure and backbone dynamics of streptopain: insight into diverse substrate specificity.
J.Biol.Chem., 284, 2009
3D00
DownloadVisualize
BU of 3d00 by Molmil
Crystal structure of a tungsten formylmethanofuran dehydrogenase subunit e (fmde)-like protein (syn_00638) from syntrophus aciditrophicus at 1.90 A resolution
Descriptor: CHLORIDE ION, Tungsten formylmethanofuran dehydrogenase subunit E, ZINC ION
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-04-30
Release date:2008-05-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved alpha+beta core domain and an auxiliary C-terminal treble-clef zinc finger.
Acta Crystallogr.,Sect.F, 66, 2010
3CGH
DownloadVisualize
BU of 3cgh by Molmil
Crystal structure of a susd homolog (bt_3984) from bacteroides thetaiotaomicron vpi-5482 at 1.70 A resolution
Descriptor: ACETATE ION, SusD homolog, ZINC ION
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-03-05
Release date:2008-03-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules.
Acta Crystallogr.,Sect.F, 66, 2010
9IW1
DownloadVisualize
BU of 9iw1 by Molmil
wild type NMN/NaMN adenylyltransferase from Chaetomium thermophilum
Descriptor: 1,2-ETHANEDIOL, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Qian, X.-L, Zheng, Y.-C, Chen, C, Xu, J.-H.
Deposit date:2024-07-24
Release date:2025-06-25
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Biochemical and structural characterization of a novel nicotinamide mononucleotide adenylyltransferase from thermophilic fungi Chaetomium thermophilum.
Biochem.Biophys.Res.Commun., 776, 2025
5JP9
DownloadVisualize
BU of 5jp9 by Molmil
Crystal Structure of cytidine monophosphate hydroxymethylase MilA with dCMP
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CMP 5-hydroxymethylase
Authors:Zhao, G, He, X.
Deposit date:2016-05-03
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Structural basis of the substrate preference towards CMP for a thymidylate synthase MilA involved in mildiomycin biosynthesis
Sci Rep, 6, 2016
3C7L
DownloadVisualize
BU of 3c7l by Molmil
Molecular architecture of Galphao and the structural basis for RGS16-mediated deactivation
Descriptor: Regulator of G-protein signaling 16
Authors:Slep, K.C, Kercher, M.A, Wieland, T, Chen, C, Simon, M.I, Sigler, P.B.
Deposit date:2008-02-07
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Molecular architecture of G{alpha}o and the structural basis for RGS16-mediated deactivation.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C7K
DownloadVisualize
BU of 3c7k by Molmil
Molecular architecture of Galphao and the structural basis for RGS16-mediated deactivation
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Guanine nucleotide-binding protein G(o) subunit alpha, MAGNESIUM ION, ...
Authors:Slep, K.C, Kercher, M.A, Wieland, T, Chen, C, Simon, M.I, Sigler, P.B.
Deposit date:2008-02-07
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular architecture of G{alpha}o and the structural basis for RGS16-mediated deactivation.
Proc.Natl.Acad.Sci.Usa, 105, 2008
8CQI
DownloadVisualize
BU of 8cqi by Molmil
Human heparanase in complex with inhibitor R3794
Descriptor: (3~{S},4~{S})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid, 1,2-ETHANEDIOL, 1,5-anhydro-D-arabinitol, ...
Authors:Moran, E.M, Davies, G.J, Chen, C, Nieuwendijk, E.V, Wu, L, Skoulikopoulou, F, Riet, V.V, Overkleeft, H.S, Armstrong, Z.
Deposit date:2023-03-06
Release date:2024-01-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Basis for Inhibition of Heparanases and beta-Glucuronidases by Siastatin B.
J.Am.Chem.Soc., 146, 2024
1HEV
DownloadVisualize
BU of 1hev by Molmil
HEVEIN: THE NMR ASSIGNMENT AND AN ASSESSMENT OF SOLUTION-STATE FOLDING FOR THE AGGLUTININ-TOXIN MOTIF
Descriptor: HEVEIN
Authors:Andersen, N.H, Cao, B.
Deposit date:1993-01-14
Release date:1994-01-31
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Hevein: NMR assignment and assessment of solution-state folding for the agglutinin-toxin motif.
Biochemistry, 32, 1993
1H65
DownloadVisualize
BU of 1h65 by Molmil
Crystal structure of pea Toc34 - a novel GTPase of the chloroplast protein translocon
Descriptor: CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Sun, Y.J, Forouhar, F, Li, H.M, Tu, S.L, Kao, S, Shr, H.L, Chou, C.C, Hsiao, C.D.
Deposit date:2001-06-06
Release date:2002-01-29
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Pea Toc34 - a Novel Gtpase of the Chloroplast Protein Translocon
Nat.Struct.Biol., 9, 2002
6XAE
DownloadVisualize
BU of 6xae by Molmil
SUBSTITUTED BENZYLOXYTRICYCLIC COMPOUNDS AS RETINOIC ACID-RELATED ORPHAN RECEPTOR GAMMA T AGONISTS
Descriptor: Nuclear receptor ROR-gamma, trans-4-{(3aR,9bR)-7-[(2-chloro-6-fluorophenyl)methoxy]-9b-[(4-fluorophenyl)sulfonyl]-1,2,3a,4,5,9b-hexahydro-3H-benzo[e]indole-3-carbonyl}cyclohexane-1-carboxylic acid
Authors:Sack, J.S.
Deposit date:2020-06-04
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.257 Å)
Cite:Substituted benzyloxytricyclic compounds as retinoic acid-related orphan receptor gamma t (ROR gamma t) agonists.
Bioorg.Med.Chem.Lett., 30, 2020

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon