Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3IJK
DownloadVisualize
BU of 3ijk by Molmil
5-OMe modified DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3'
Authors:Sheng, J, Zhang, W, Hassan, A.E.A, Gan, J, Huang, Z.
Deposit date:2009-08-04
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
3LTU
DownloadVisualize
BU of 3ltu by Molmil
5-SeMe-dU containing DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'
Authors:Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
5VRE
DownloadVisualize
BU of 5vre by Molmil
Crystal structure of a lysosomal potassium-selective channel TMEM175 homolog from Chamaesiphon Minutus
Descriptor: Putative integral membrane protein
Authors:Lee, C, Guo, J, Jiang, Y.
Deposit date:2017-05-10
Release date:2017-07-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.299 Å)
Cite:The lysosomal potassium channel TMEM175 adopts a novel tetrameric architecture.
Nature, 547, 2017
6XJV
DownloadVisualize
BU of 6xjv by Molmil
MCU holocomplex in High-calcium state
Descriptor: Calcium uniporter protein, mitochondrial, Calcium uptake protein 1, ...
Authors:Wang, Y, Jiang, Y.
Deposit date:2020-06-24
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.17 Å)
Cite:Structural insights into the Ca 2+ -dependent gating of the human mitochondrial calcium uniporter.
Elife, 9, 2020
8GRA
DownloadVisualize
BU of 8gra by Molmil
Structure of Type VI secretion system cargo delivery vehicle Hcp-VgrG-PAAR
Descriptor: Bacterodales T6SS protein TssD (Hcp), Type VI secretion system spike protein Paar, Type VI secretion system spike protein VgrG
Authors:Wen, Y, He, W, Zhu, L.
Deposit date:2022-09-01
Release date:2023-07-12
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure and assembly of type VI secretion system cargo delivery vehicle.
Cell Rep, 42, 2023
6XJX
DownloadVisualize
BU of 6xjx by Molmil
MCU holocomplex in Low-calcium blocking state
Descriptor: Calcium uniporter protein, mitochondrial, Calcium uptake protein 1, ...
Authors:Wang, Y, Jiang, Y.
Deposit date:2020-06-24
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural insights into the Ca 2+ -dependent gating of the human mitochondrial calcium uniporter.
Elife, 9, 2020
6O58
DownloadVisualize
BU of 6o58 by Molmil
Human MCU-EMRE complex, dimer of channel
Descriptor: CALCIUM ION, Calcium uniporter protein, mitochondrial, ...
Authors:Wang, Y, Bai, X, Jiang, Y.
Deposit date:2019-03-01
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Mechanism of EMRE-Dependent Gating of the Human Mitochondrial Calcium Uniporter.
Cell, 177, 2019
6O5B
DownloadVisualize
BU of 6o5b by Molmil
Monomer of a cation channel
Descriptor: CALCIUM ION, Calcium uniporter protein, mitochondrial, ...
Authors:Wang, Y, Bai, X, Jiang, Y.
Deposit date:2019-03-01
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Mechanism of EMRE-Dependent Gating of the Human Mitochondrial Calcium Uniporter.
Cell, 177, 2019
7YW0
DownloadVisualize
BU of 7yw0 by Molmil
Bacteroides fragilis Hcp5
Descriptor: Bacterodales T6SS protein TssD (Hcp)
Authors:Wen, Y, He, W, Bai, Y.
Deposit date:2022-08-20
Release date:2023-08-30
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure and assembly of type VI secretion system cargo delivery vehicle.
Cell Rep, 42, 2023
6O84
DownloadVisualize
BU of 6o84 by Molmil
Cryo-EM structure of OTOP3 from xenopus tropicalis
Descriptor: LOC100127796 protein,LOC100127796 protein,OTOP3,LOC100127796 protein,LOC100127796 protein
Authors:Chen, Q.F, Bai, X.C, Jiang, Y.X.
Deposit date:2019-03-08
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.92 Å)
Cite:Structural and functional characterization of an otopetrin family proton channel.
Elife, 8, 2019
7XA9
DownloadVisualize
BU of 7xa9 by Molmil
Structure of Arabidopsis thaliana CLCa
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chloride channel protein CLC-a, MAGNESIUM ION, ...
Authors:Ji, S, Jin, H, Kaiming, Z, Mingxing, W, Shanshan, L, Long, C.
Deposit date:2022-03-17
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-EM structure of the plant nitrate transporter AtCLCa reveals characteristics of the anion-binding site and the ATP-binding pocket.
J.Biol.Chem., 299, 2023
7CCH
DownloadVisualize
BU of 7cch by Molmil
Acinetobacter baumannii histidine kinase AdeS
Descriptor: AdeS
Authors:Wen, Y, Felix, J.
Deposit date:2020-06-17
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.848 Å)
Cite:Proteolysis and multimerization regulate signaling along the two-component regulatory system AdeRS.
Iscience, 24, 2021
7CCI
DownloadVisualize
BU of 7cci by Molmil
Acinetobacter baumannii response regulator AdeR with disordered N terminus
Descriptor: AdeR, MAGNESIUM ION
Authors:Wen, Y.
Deposit date:2020-06-17
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Proteolysis and multimerization regulate signaling along the two-component regulatory system AdeRS.
Iscience, 24, 2021
5VFD
DownloadVisualize
BU of 5vfd by Molmil
Diazabicyclooctenone ETX2514 bound to Class D beta lactamase OXA-24 from A. baumannii
Descriptor: (2S,5R)-1-formyl-4-methyl-5-[(sulfooxy)amino]-1,2,5,6-tetrahydropyridine-2-carboxamide, (2S,5R)-4-methyl-7-oxo-6-(sulfooxy)-1,6-diazabicyclo[3.2.1]oct-3-ene-2-carboxamide, Beta-lactamase, ...
Authors:Olivier, N.B, Lahiri, S.
Deposit date:2017-04-07
Release date:2017-06-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:ETX2514 is a broad-spectrum beta-lactamase inhibitor for the treatment of drug-resistant Gram-negative bacteria including Acinetobacter baumannii.
Nat Microbiol, 2, 2017
1MOZ
DownloadVisualize
BU of 1moz by Molmil
ADP-ribosylation factor-like 1 (ARL1) from Saccharomyces cerevisiae
Descriptor: ADP-ribosylation factor-like protein 1, GUANOSINE-5'-DIPHOSPHATE
Authors:Amor, J.C, Horton, J.R, Zhu, X, Wang, Y, Sullards, C, Ringe, D, Cheng, X, Kahn, R.A.
Deposit date:2002-09-10
Release date:2002-10-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structures of Yeast ARF2 and ARL1: DISTINCT ROLES FOR THE N TERMINUS IN THE STRUCTURE AND FUNCTION OF ARF FAMILY GTPases
J.Biol.Chem., 276, 2001
3H42
DownloadVisualize
BU of 3h42 by Molmil
Crystal structure of PCSK9 in complex with Fab from LDLR competitive antibody
Descriptor: Fab from LDLR competitive antibody: Heavy chain, Fab from LDLR competitive antibody: Light chain, Proprotein convertase subtilisin/kexin type 9, ...
Authors:Piper, D.E, Walker, N.P.C, Romanow, W.G, Thibault, S.T, Tsai, M.M, Yang, E.
Deposit date:2009-04-17
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:From the Cover: A proprotein convertase subtilisin/kexin type 9 neutralizing antibody reduces serum cholesterol in mice and nonhuman primates.
Proc.Natl.Acad.Sci.USA, 106, 2009
1ML7
DownloadVisualize
BU of 1ml7 by Molmil
Crystal structure of nitrophorin 4 complexed with 4-iodopyrazole
Descriptor: 4-IODOPYRAZOLE, 5,8-DIMETHYL-1,2,3,4-TETRAVINYLPORPHINE-6,7-DIPROPIONIC ACID FERROUS COMPLEX, nitrophorin 4
Authors:Berry, R.E, Ding, X.D, Weichsel, A, Montfort, W.R, Walker, F.A.
Deposit date:2002-08-30
Release date:2002-09-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Axial ligand complexes of the Rhodnius nitrophorins: reduction potentials, binding constants, EPR spectra, and structures of the 4-iodopyrazole and imidazole complexes of NP4
J.Biol.Inorg.Chem., 9, 2004
7XD2
DownloadVisualize
BU of 7xd2 by Molmil
SARS-CoV-2 S ectodomain trimer in complex with neutralizing antibody 10-5B
Descriptor: H chain of antibody 10-5B, L chian of antibody 10-5B, Spike glycoprotein
Authors:Wang, X, Wang, Z.
Deposit date:2022-03-26
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Inactivated vaccine-elicited potent antibodies can broadly neutralize SARS-CoV-2 circulating variants.
Nat Commun, 14, 2023
3HHU
DownloadVisualize
BU of 3hhu by Molmil
Human heat-shock protein 90 (HSP90) in complex with {4-[3-(2,4-dihydroxy-5-isopropyl-phenyl)-5-thioxo- 1,5-dihydro-[1,2,4]triazol-4-yl]-benzyl}-carbamic acid ethyl ester {ZK 2819}
Descriptor: Heat shock protein HSP 90-alpha, ethyl (4-{3-[2,4-dihydroxy-5-(1-methylethyl)phenyl]-5-sulfanyl-4H-1,2,4-triazol-4-yl}benzyl)carbamate
Authors:Adler, M, Whitlow, M.
Deposit date:2009-05-17
Release date:2009-07-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Potent triazolothione inhibitor of heat-shock protein-90.
Chem.Biol.Drug Des., 74, 2009
9EOU
DownloadVisualize
BU of 9eou by Molmil
Crystal Structure of the b1b2 domains from Human Neuropilin-1 in complex with a peptide.
Descriptor: Neuropilin-1, Osteopontin
Authors:Caing-Carlsson, R, Duelli, A, Walse, B.
Deposit date:2024-03-15
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Identification of an osteopontin-derived peptide that binds neuropilin-1 and activates vascular repair responses and angiogenesis.
Pharmacol Res, 205, 2024
6KDT
DownloadVisualize
BU of 6kdt by Molmil
Crystal structure of human DNMT3B (Q772R)-DNMT3L complex
Descriptor: DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, FORMIC ACID, ...
Authors:Lin, C.-C, Chen, Y.-P, Yang, W.-Z, Shen, C.-K, Yuan, H.S.
Deposit date:2019-07-02
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B.
Nucleic Acids Res., 48, 2020
4OEW
DownloadVisualize
BU of 4oew by Molmil
Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors
Descriptor: 6-ethyl-5-iodo-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one, MAGNESIUM ION, ZINC ION, ...
Authors:Chen, T.T, Ren, J, Xu, Y.C.
Deposit date:2014-01-14
Release date:2015-04-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Thermodynamic and structural characterization of halogen bonding in protein-ligand interactions: a case study of PDE5 and its inhibitors.
J.Med.Chem., 57, 2014
6KDB
DownloadVisualize
BU of 6kdb by Molmil
Crystal structure of human DNMT3B-DNMT3L in complex with DNA containing CpGpT site
Descriptor: DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, ...
Authors:Lin, C.-C, Chen, Y.-P, Yang, W.-Z, Shen, C.-K, Yuan, H.S.
Deposit date:2019-07-01
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.862 Å)
Cite:Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B.
Nucleic Acids Res., 48, 2020
6KDA
DownloadVisualize
BU of 6kda by Molmil
Crystal structure of human DNMT3B-DNMT3L in complex with DNA containing CpGpG site
Descriptor: DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, ...
Authors:Lin, C.-C, Chen, Y.-P, Yang, W.-Z, Shen, C.-K, Yuan, H.S.
Deposit date:2019-07-01
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.909 Å)
Cite:Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B.
Nucleic Acids Res., 48, 2020
4OKG
DownloadVisualize
BU of 4okg by Molmil
LpxC from P.aeruginosa with the inhibitor 6-(benzimidazol-1-yl)-5-[4-[2-[6-[(4-methylpiperazin-1-yl)methyl]-3-pyridyl]ethynyl]phenyl]pyridine-3-carbohydroxamic acid
Descriptor: 6-(1H-benzimidazol-1-yl)-N-hydroxy-5-[4-({6-[(4-methylpiperazin-1-yl)methyl]pyridin-3-yl}ethynyl)phenyl]pyridine-3-carboxamide, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, ZINC ION
Authors:Olivier, N.B, Lahiri, S.D, Prince, D.B.
Deposit date:2014-01-22
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Overexpression of Pseudomonas aeruginosa LpxC in the Presence of an Inhibitor in an acrB Deletion Escherichia coli strain for Structural Studies
Protein Express.Purif., 2014

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon